data_1HBK
#
_model_server_result.job_id            Tg_ESk8Az5QS6LPg7oMY1g 
_model_server_result.datetime_utc      '2024-11-06 17:39:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hbk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1092}' 
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_entry.id    1HBK 
#
_exptl.entry_id    1HBK 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1HBK 
_cell.length_a            48.665 
_cell.length_b            48.665 
_cell.length_c            48.411 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HBK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 1 A HIS 0 1_555 E NI NI . A NI 1092 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc2 A N HIS 1 A HIS 0 1_555 E NI NI . A NI 1092 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc3 A OE2 GLU 8 A GLU 7 3_554 D NI NI . A NI 1091 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc4 A NE2 HIS 50 A HIS 49 1_555 D NI NI . A NI 1091 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? 
metalc ? metalc5 D NI NI . A NI 1091 1_555 F O HOH . A HOH 2008 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? 
metalc ? metalc6 D NI NI . A NI 1091 1_555 F O HOH . A HOH 2009 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc7 D NI NI . A NI 1091 1_555 F O HOH . A HOH 2038 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc8 E NI NI . A NI 1092 1_555 F O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? 
metalc ? metalc9 E NI NI . A NI 1092 1_555 F O HOH . A HOH 2043 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc10 E NI NI . A NI 1092 1_555 F O HOH . A HOH 2071 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
metalc ? metalc11 E NI NI . A NI 1092 1_555 F O HOH . A HOH 2076 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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_atom_sites.entry_id                     1HBK 
_atom_sites.fract_transf_matrix[1][1]    0.020549 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020549 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020656 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 COA A 1 1089 1089 COA COA . 
C 3 MYR A 1 1090 1090 MYR MYR . 
D 4 NI A 1 1091 1091 NI NI . 
E 4 NI A 1 1092 1092 NI NI . 
F 5 HOH A 1 2001 2001 HOH HOH . 
F 5 HOH A 2 2002 2002 HOH HOH . 
F 5 HOH A 3 2003 2003 HOH HOH . 
F 5 HOH A 4 2004 2004 HOH HOH . 
F 5 HOH A 5 2005 2005 HOH HOH . 
F 5 HOH A 6 2006 2006 HOH HOH . 
F 5 HOH A 7 2007 2007 HOH HOH . 
F 5 HOH A 8 2008 2008 HOH HOH . 
F 5 HOH A 9 2009 2009 HOH HOH . 
F 5 HOH A 10 2010 2010 HOH HOH . 
F 5 HOH A 11 2011 2011 HOH HOH . 
F 5 HOH A 12 2012 2012 HOH HOH . 
F 5 HOH A 13 2013 2013 HOH HOH . 
F 5 HOH A 14 2014 2014 HOH HOH . 
F 5 HOH A 15 2015 2015 HOH HOH . 
F 5 HOH A 16 2016 2016 HOH HOH . 
F 5 HOH A 17 2017 2017 HOH HOH . 
F 5 HOH A 18 2018 2018 HOH HOH . 
F 5 HOH A 19 2019 2019 HOH HOH . 
F 5 HOH A 20 2020 2020 HOH HOH . 
F 5 HOH A 21 2021 2021 HOH HOH . 
F 5 HOH A 22 2022 2022 HOH HOH . 
F 5 HOH A 23 2023 2023 HOH HOH . 
F 5 HOH A 24 2024 2024 HOH HOH . 
F 5 HOH A 25 2025 2025 HOH HOH . 
F 5 HOH A 26 2026 2026 HOH HOH . 
F 5 HOH A 27 2027 2027 HOH HOH . 
F 5 HOH A 28 2028 2028 HOH HOH . 
F 5 HOH A 29 2029 2029 HOH HOH . 
F 5 HOH A 30 2030 2030 HOH HOH . 
F 5 HOH A 31 2031 2031 HOH HOH . 
F 5 HOH A 32 2032 2032 HOH HOH . 
F 5 HOH A 33 2033 2033 HOH HOH . 
F 5 HOH A 34 2034 2034 HOH HOH . 
F 5 HOH A 35 2035 2035 HOH HOH . 
F 5 HOH A 36 2036 2036 HOH HOH . 
F 5 HOH A 37 2037 2037 HOH HOH . 
F 5 HOH A 38 2038 2038 HOH HOH . 
F 5 HOH A 39 2039 2039 HOH HOH . 
F 5 HOH A 40 2040 2040 HOH HOH . 
F 5 HOH A 41 2041 2041 HOH HOH . 
F 5 HOH A 42 2042 2042 HOH HOH . 
F 5 HOH A 43 2043 2043 HOH HOH . 
F 5 HOH A 44 2044 2044 HOH HOH . 
F 5 HOH A 45 2045 2045 HOH HOH . 
F 5 HOH A 46 2046 2046 HOH HOH . 
F 5 HOH A 47 2047 2047 HOH HOH . 
F 5 HOH A 48 2048 2048 HOH HOH . 
F 5 HOH A 49 2049 2049 HOH HOH . 
F 5 HOH A 50 2050 2050 HOH HOH . 
F 5 HOH A 51 2051 2051 HOH HOH . 
F 5 HOH A 52 2052 2052 HOH HOH . 
F 5 HOH A 53 2053 2053 HOH HOH . 
F 5 HOH A 54 2054 2054 HOH HOH . 
F 5 HOH A 55 2055 2055 HOH HOH . 
F 5 HOH A 56 2056 2056 HOH HOH . 
F 5 HOH A 57 2057 2057 HOH HOH . 
F 5 HOH A 58 2058 2058 HOH HOH . 
F 5 HOH A 59 2059 2059 HOH HOH . 
F 5 HOH A 60 2060 2060 HOH HOH . 
F 5 HOH A 61 2061 2061 HOH HOH . 
F 5 HOH A 62 2062 2062 HOH HOH . 
F 5 HOH A 63 2063 2063 HOH HOH . 
F 5 HOH A 64 2064 2064 HOH HOH . 
F 5 HOH A 65 2065 2065 HOH HOH . 
F 5 HOH A 66 2066 2066 HOH HOH . 
F 5 HOH A 67 2067 2067 HOH HOH . 
F 5 HOH A 68 2068 2068 HOH HOH . 
F 5 HOH A 69 2069 2069 HOH HOH . 
F 5 HOH A 70 2070 2070 HOH HOH . 
F 5 HOH A 71 2071 2071 HOH HOH . 
F 5 HOH A 72 2072 2072 HOH HOH . 
F 5 HOH A 73 2073 2073 HOH HOH . 
F 5 HOH A 74 2074 2074 HOH HOH . 
F 5 HOH A 75 2075 2075 HOH HOH . 
F 5 HOH A 76 2076 2076 HOH HOH . 
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_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               12.83 
_atom_site.Cartn_y               27.607 
_atom_site.Cartn_z               36.006 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        45.09 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           1092 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#