data_1HBP # _model_server_result.job_id egUy96ZC_ZDoj_2I-U8lEA _model_server_result.datetime_utc '2024-11-28 10:42:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hbp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":184}' # _entry.id 1HBP # _exptl.entry_id 1HBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.452 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HBP _cell.length_a 46.08 _cell.length_b 49.12 _cell.length_c 76.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 174 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 A SG CYS 120 A CYS 120 1_555 A SG CYS 129 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C20 H30 O' _chem_comp.formula_weight 286.452 _chem_comp.id RTL _chem_comp.mon_nstd_flag . _chem_comp.name RETINOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RTL sing 277 n n C1 C6 RTL sing 278 n n C1 C16 RTL sing 279 n n C1 C17 RTL sing 280 n n C2 C3 RTL sing 281 n n C2 H21 RTL sing 282 n n C2 H22 RTL sing 283 n n C3 C4 RTL sing 284 n n C3 H31 RTL sing 285 n n C3 H32 RTL sing 286 n n C4 C5 RTL sing 287 n n C4 H41 RTL sing 288 n n C4 H42 RTL sing 289 n n C5 C6 RTL doub 290 n n C5 C18 RTL sing 291 n n C6 C7 RTL sing 292 n n C7 C8 RTL doub 293 e n C7 H7 RTL sing 294 n n C8 C9 RTL sing 295 n n C8 H8 RTL sing 296 n n C9 C10 RTL doub 297 e n C9 C19 RTL sing 298 n n C10 C11 RTL sing 299 n n C10 H10 RTL sing 300 n n C11 C12 RTL doub 301 e n C11 H11 RTL sing 302 n n C12 C13 RTL sing 303 n n C12 H12 RTL sing 304 n n C13 C14 RTL doub 305 e n C13 C20 RTL sing 306 n n C14 C15 RTL sing 307 n n C14 H14 RTL sing 308 n n C15 O1 RTL sing 309 n n C15 H151 RTL sing 310 n n C15 H152 RTL sing 311 n n O1 HO1 RTL sing 312 n n C16 H161 RTL sing 313 n n C16 H162 RTL sing 314 n n C16 H163 RTL sing 315 n n C17 H171 RTL sing 316 n n C17 H172 RTL sing 317 n n C17 H173 RTL sing 318 n n C18 H181 RTL sing 319 n n C18 H182 RTL sing 320 n n C18 H183 RTL sing 321 n n C19 H191 RTL sing 322 n n C19 H192 RTL sing 323 n n C19 H193 RTL sing 324 n n C20 H201 RTL sing 325 n n C20 H202 RTL sing 326 n n C20 H203 RTL sing 327 n n # _atom_sites.entry_id 1HBP _atom_sites.fract_transf_matrix[1][1] 0.021701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020358 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RTL A 1 184 176 RTL RTL . C 3 HOH A 1 185 177 HOH HOH . C 3 HOH A 2 186 178 HOH HOH . C 3 HOH A 3 187 179 HOH HOH . C 3 HOH A 4 188 180 HOH HOH . C 3 HOH A 5 189 181 HOH HOH . C 3 HOH A 6 190 182 HOH HOH . C 3 HOH A 7 191 183 HOH HOH . C 3 HOH A 8 192 184 HOH HOH . C 3 HOH A 9 193 185 HOH HOH . C 3 HOH A 10 194 186 HOH HOH . C 3 HOH A 11 195 187 HOH HOH . C 3 HOH A 12 196 188 HOH HOH . C 3 HOH A 13 197 189 HOH HOH . C 3 HOH A 14 198 190 HOH HOH . C 3 HOH A 15 199 191 HOH HOH . C 3 HOH A 16 200 192 HOH HOH . C 3 HOH A 17 201 193 HOH HOH . C 3 HOH A 18 202 194 HOH HOH . C 3 HOH A 19 203 195 HOH HOH . C 3 HOH A 20 204 196 HOH HOH . C 3 HOH A 21 205 197 HOH HOH . C 3 HOH A 22 206 198 HOH HOH . C 3 HOH A 23 207 199 HOH HOH . C 3 HOH A 24 208 200 HOH HOH . C 3 HOH A 25 209 201 HOH HOH . C 3 HOH A 26 210 202 HOH HOH . C 3 HOH A 27 211 203 HOH HOH . C 3 HOH A 28 212 204 HOH HOH . C 3 HOH A 29 213 205 HOH HOH . C 3 HOH A 30 214 206 HOH HOH . C 3 HOH A 31 215 207 HOH HOH . C 3 HOH A 32 216 208 HOH HOH . C 3 HOH A 33 217 209 HOH HOH . C 3 HOH A 34 218 210 HOH HOH . C 3 HOH A 35 219 211 HOH HOH . C 3 HOH A 36 220 212 HOH HOH . C 3 HOH A 37 221 213 HOH HOH . C 3 HOH A 38 222 214 HOH HOH . C 3 HOH A 39 223 215 HOH HOH . C 3 HOH A 40 224 216 HOH HOH . C 3 HOH A 41 225 217 HOH HOH . C 3 HOH A 42 226 218 HOH HOH . C 3 HOH A 43 227 219 HOH HOH . C 3 HOH A 44 228 220 HOH HOH . C 3 HOH A 45 229 221 HOH HOH . C 3 HOH A 46 230 222 HOH HOH . C 3 HOH A 47 231 223 HOH HOH . C 3 HOH A 48 232 224 HOH HOH . C 3 HOH A 49 233 225 HOH HOH . C 3 HOH A 50 234 226 HOH HOH . C 3 HOH A 51 235 227 HOH HOH . C 3 HOH A 52 236 228 HOH HOH . C 3 HOH A 53 237 229 HOH HOH . C 3 HOH A 54 238 230 HOH HOH . C 3 HOH A 55 239 231 HOH HOH . C 3 HOH A 56 240 232 HOH HOH . C 3 HOH A 57 241 233 HOH HOH . C 3 HOH A 58 242 234 HOH HOH . C 3 HOH A 59 243 235 HOH HOH . C 3 HOH A 60 244 236 HOH HOH . C 3 HOH A 61 245 237 HOH HOH . C 3 HOH A 62 246 238 HOH HOH . C 3 HOH A 63 247 239 HOH HOH . C 3 HOH A 64 248 240 HOH HOH . C 3 HOH A 65 249 241 HOH HOH . C 3 HOH A 66 250 242 HOH HOH . C 3 HOH A 67 251 243 HOH HOH . C 3 HOH A 68 252 244 HOH HOH . C 3 HOH A 69 253 245 HOH HOH . C 3 HOH A 70 254 246 HOH HOH . C 3 HOH A 71 255 247 HOH HOH . C 3 HOH A 72 256 248 HOH HOH . C 3 HOH A 73 257 249 HOH HOH . C 3 HOH A 74 258 250 HOH HOH . C 3 HOH A 75 259 251 HOH HOH . C 3 HOH A 76 260 252 HOH HOH . C 3 HOH A 77 261 253 HOH HOH . C 3 HOH A 78 262 254 HOH HOH . C 3 HOH A 79 263 255 HOH HOH . C 3 HOH A 80 264 256 HOH HOH . C 3 HOH A 81 265 257 HOH HOH . C 3 HOH A 82 266 258 HOH HOH . C 3 HOH A 83 267 259 HOH HOH . C 3 HOH A 84 268 260 HOH HOH . C 3 HOH A 85 269 261 HOH HOH . C 3 HOH A 86 270 262 HOH HOH . C 3 HOH A 87 271 263 HOH HOH . C 3 HOH A 88 272 264 HOH HOH . C 3 HOH A 89 273 265 HOH HOH . C 3 HOH A 90 274 266 HOH HOH . C 3 HOH A 91 275 267 HOH HOH . C 3 HOH A 92 276 268 HOH HOH . C 3 HOH A 93 277 269 HOH HOH . C 3 HOH A 94 278 270 HOH HOH . C 3 HOH A 95 279 271 HOH HOH . C 3 HOH A 96 280 272 HOH HOH . C 3 HOH A 97 281 273 HOH HOH . C 3 HOH A 98 282 274 HOH HOH . C 3 HOH A 99 283 275 HOH HOH . C 3 HOH A 100 284 276 HOH HOH . C 3 HOH A 101 285 277 HOH HOH . C 3 HOH A 102 286 278 HOH HOH . C 3 HOH A 103 287 279 HOH HOH . C 3 HOH A 104 288 280 HOH HOH . C 3 HOH A 105 289 281 HOH HOH . C 3 HOH A 106 290 282 HOH HOH . C 3 HOH A 107 291 283 HOH HOH . C 3 HOH A 108 292 284 HOH HOH . C 3 HOH A 109 293 285 HOH HOH . C 3 HOH A 110 294 286 HOH HOH . C 3 HOH A 111 295 287 HOH HOH . C 3 HOH A 112 296 288 HOH HOH . C 3 HOH A 113 297 289 HOH HOH . C 3 HOH A 114 298 290 HOH HOH . C 3 HOH A 115 299 291 HOH HOH . C 3 HOH A 116 300 292 HOH HOH . C 3 HOH A 117 301 293 HOH HOH . C 3 HOH A 118 302 294 HOH HOH . C 3 HOH A 119 303 295 HOH HOH . C 3 HOH A 120 304 296 HOH HOH . C 3 HOH A 121 305 297 HOH HOH . C 3 HOH A 122 306 298 HOH HOH . C 3 HOH A 123 307 299 HOH HOH . C 3 HOH A 124 308 300 HOH HOH . C 3 HOH A 125 309 301 HOH HOH . C 3 HOH A 126 310 302 HOH HOH . C 3 HOH A 127 311 303 HOH HOH . C 3 HOH A 128 312 304 HOH HOH . C 3 HOH A 129 313 305 HOH HOH . C 3 HOH A 130 314 306 HOH HOH . C 3 HOH A 131 315 307 HOH HOH . C 3 HOH A 132 316 308 HOH HOH . C 3 HOH A 133 317 309 HOH HOH . C 3 HOH A 134 318 310 HOH HOH . C 3 HOH A 135 319 311 HOH HOH . C 3 HOH A 136 320 312 HOH HOH . C 3 HOH A 137 321 313 HOH HOH . C 3 HOH A 138 322 314 HOH HOH . C 3 HOH A 139 323 315 HOH HOH . C 3 HOH A 140 324 316 HOH HOH . C 3 HOH A 141 325 317 HOH HOH . C 3 HOH A 142 326 318 HOH HOH . C 3 HOH A 143 327 319 HOH HOH . C 3 HOH A 144 328 320 HOH HOH . C 3 HOH A 145 329 321 HOH HOH . C 3 HOH A 146 330 322 HOH HOH . C 3 HOH A 147 331 323 HOH HOH . C 3 HOH A 148 332 324 HOH HOH . C 3 HOH A 149 333 325 HOH HOH . C 3 HOH A 150 334 326 HOH HOH . C 3 HOH A 151 335 327 HOH HOH . C 3 HOH A 152 336 328 HOH HOH . C 3 HOH A 153 337 329 HOH HOH . C 3 HOH A 154 338 330 HOH HOH . C 3 HOH A 155 339 331 HOH HOH . C 3 HOH A 156 340 332 HOH HOH . C 3 HOH A 157 341 333 HOH HOH . C 3 HOH A 158 342 334 HOH HOH . C 3 HOH A 159 343 335 HOH HOH . C 3 HOH A 160 344 336 HOH HOH . C 3 HOH A 161 345 337 HOH HOH . C 3 HOH A 162 346 338 HOH HOH . C 3 HOH A 163 347 339 HOH HOH . C 3 HOH A 164 348 340 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RTL . . . B 2 29.877 21.439 45.307 1 12.64 ? C1 RTL 184 A 1 HETATM 2 C C2 RTL . . . B 2 29.355 21.485 43.867 1 12.48 ? C2 RTL 184 A 1 HETATM 3 C C3 RTL . . . B 2 30.066 20.6 42.85 1 12.23 ? C3 RTL 184 A 1 HETATM 4 C C4 RTL . . . B 2 31.192 19.767 43.445 1 19.52 ? C4 RTL 184 A 1 HETATM 5 C C5 RTL . . . B 2 31.013 19.381 44.917 1 18.71 ? C5 RTL 184 A 1 HETATM 6 C C6 RTL . . . B 2 30.257 20.063 45.838 1 23.22 ? C6 RTL 184 A 1 HETATM 7 C C7 RTL . . . B 2 30.516 19.712 47.256 1 4.39 ? C7 RTL 184 A 1 HETATM 8 C C8 RTL . . . B 2 31.767 19.334 47.703 1 12.65 ? C8 RTL 184 A 1 HETATM 9 C C9 RTL . . . B 2 31.86 19.141 49.148 1 10.98 ? C9 RTL 184 A 1 HETATM 10 C C10 RTL . . . B 2 33.174 19.265 49.482 1 9.34 ? C10 RTL 184 A 1 HETATM 11 C C11 RTL . . . B 2 33.34 19.023 50.917 1 27.65 ? C11 RTL 184 A 1 HETATM 12 C C12 RTL . . . B 2 34.653 19.183 51.255 1 12.08 ? C12 RTL 184 A 1 HETATM 13 C C13 RTL . . . B 2 35.015 18.509 52.5 1 28.27 ? C13 RTL 184 A 1 HETATM 14 C C14 RTL . . . B 2 36.315 18.792 52.786 1 45.11 ? C14 RTL 184 A 1 HETATM 15 C C15 RTL . . . B 2 36.687 18.157 54.037 1 47.45 ? C15 RTL 184 A 1 HETATM 16 O O1 RTL . . . B 2 37.942 18.559 54.366 1 54.6 ? O1 RTL 184 A 1 HETATM 17 C C16 RTL . . . B 2 28.449 21.431 45.852 1 11.86 ? C16 RTL 184 A 1 HETATM 18 C C17 RTL . . . B 2 30.636 22.705 45.689 1 16.56 ? C17 RTL 184 A 1 HETATM 19 C C18 RTL . . . B 2 31.625 18.013 45.128 1 18.99 ? C18 RTL 184 A 1 HETATM 20 C C19 RTL . . . B 2 30.484 18.899 49.762 1 17.28 ? C19 RTL 184 A 1 HETATM 21 C C20 RTL . . . B 2 34.187 18.942 53.716 1 12.23 ? C20 RTL 184 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #