data_1HBV # _model_server_result.job_id wz7MGLYkMKJRfRqbRXRQHw _model_server_result.datetime_utc '2024-11-22 23:24:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hbv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 1HBV # _exptl.entry_id 1HBV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 585.778 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[3-BENZYL-5-(1-ALANYL-AMINOETHYL)-2,3,6,7-TETRAHYDRO-1H-AZEPIN-1-YL]-1-OXOPROPYL-VALINYL-VALINE-METHYLESTER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1HBV _cell.length_a 63.4 _cell.length_b 63.4 _cell.length_c 83.9 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H51 N5 O5' _chem_comp.formula_weight 585.778 _chem_comp.id GAN _chem_comp.mon_nstd_flag . _chem_comp.name 2-[3-BENZYL-5-(1-ALANYL-AMINOETHYL)-2,3,6,7-TETRAHYDRO-1H-AZEPIN-1-YL]-1-OXOPROPYL-VALINYL-VALINE-METHYLESTER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 GAN sing 83 n n N1 HN11 GAN sing 84 n n N1 HN12 GAN sing 85 n n C2 C3 GAN sing 86 n n C2 C4 GAN sing 87 n n C2 H2 GAN sing 88 n n C3 H31 GAN sing 89 n n C3 H32 GAN sing 90 n n C3 H33 GAN sing 91 n n C4 O5 GAN doub 92 n n C4 N6 GAN sing 93 n n N6 C7 GAN sing 94 n n N6 HN6 GAN sing 95 n n C7 C8 GAN sing 96 n n C7 C9 GAN sing 97 n n C7 H7 GAN sing 98 n n C8 H81 GAN sing 99 n n C8 H82 GAN sing 100 n n C8 H83 GAN sing 101 n n C9 C10 GAN doub 102 n n C9 C20 GAN sing 103 n n C10 C11 GAN sing 104 n n C10 H10 GAN sing 105 n n C11 C12 GAN sing 106 n n C11 C19 GAN sing 107 n n C11 H11 GAN sing 108 n n C12 C13 GAN sing 109 n n C12 H121 GAN sing 110 n n C12 H122 GAN sing 111 n n C13 C14 GAN doub 112 n y C13 C18 GAN sing 113 n y C14 C15 GAN sing 114 n y C14 H14 GAN sing 115 n n C15 C16 GAN doub 116 n y C15 H15 GAN sing 117 n n C16 C17 GAN sing 118 n y C16 H16 GAN sing 119 n n C17 C18 GAN doub 120 n y C17 H17 GAN sing 121 n n C18 H18 GAN sing 122 n n C19 N22 GAN sing 123 n n C19 H191 GAN sing 124 n n C19 H192 GAN sing 125 n n C20 C21 GAN sing 126 n n C20 H201 GAN sing 127 n n C20 H202 GAN sing 128 n n C21 N22 GAN sing 129 n n C21 H211 GAN sing 130 n n C21 H212 GAN sing 131 n n N22 C23 GAN sing 132 n n C23 C24 GAN sing 133 n n C23 C25 GAN sing 134 n n C23 H23 GAN sing 135 n n C24 H241 GAN sing 136 n n C24 H242 GAN sing 137 n n C24 H243 GAN sing 138 n n C25 O26 GAN doub 139 n n C25 N27 GAN sing 140 n n N27 C28 GAN sing 141 n n N27 HN7 GAN sing 142 n n C28 C29 GAN sing 143 n n C28 C32 GAN sing 144 n n C28 H28 GAN sing 145 n n C29 C30 GAN sing 146 n n C29 C31 GAN sing 147 n n C29 H29 GAN sing 148 n n C30 H301 GAN sing 149 n n C30 H302 GAN sing 150 n n C30 H303 GAN sing 151 n n C31 H311 GAN sing 152 n n C31 H312 GAN sing 153 n n C31 H313 GAN sing 154 n n C32 O33 GAN doub 155 n n C32 N34 GAN sing 156 n n N34 C35 GAN sing 157 n n N34 HN4 GAN sing 158 n n C35 C37 GAN sing 159 n n C35 C40 GAN sing 160 n n C35 H35 GAN sing 161 n n C37 C38 GAN sing 162 n n C37 C39 GAN sing 163 n n C37 H37 GAN sing 164 n n C38 H381 GAN sing 165 n n C38 H382 GAN sing 166 n n C38 H383 GAN sing 167 n n C39 H391 GAN sing 168 n n C39 H392 GAN sing 169 n n C39 H393 GAN sing 170 n n C40 O36 GAN doub 171 n n C40 O41 GAN sing 172 n n O41 C42 GAN sing 173 n n C42 H421 GAN sing 174 n n C42 H422 GAN sing 175 n n C42 H423 GAN sing 176 n n # _atom_sites.entry_id 1HBV _atom_sites.fract_transf_matrix[1][1] 0.015773 _atom_sites.fract_transf_matrix[1][2] 0.009106 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011919 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GAN A 1 600 600 GAN GAN . D 3 HOH A 1 501 501 HOH HOH . D 3 HOH A 2 503 503 HOH HOH . D 3 HOH A 3 504 504 HOH HOH . D 3 HOH A 4 506 506 HOH HOH . D 3 HOH A 5 508 508 HOH HOH . D 3 HOH A 6 509 509 HOH HOH . D 3 HOH A 7 511 511 HOH HOH . D 3 HOH A 8 512 512 HOH HOH . D 3 HOH A 9 519 519 HOH HOH . D 3 HOH A 10 522 522 HOH HOH . D 3 HOH A 11 528 528 HOH HOH . D 3 HOH A 12 529 529 HOH HOH . D 3 HOH A 13 530 530 HOH HOH . D 3 HOH A 14 535 535 HOH HOH . D 3 HOH A 15 536 536 HOH HOH . D 3 HOH A 16 538 538 HOH HOH . E 3 HOH B 1 502 502 HOH HOH . E 3 HOH B 2 505 505 HOH HOH . E 3 HOH B 3 507 507 HOH HOH . E 3 HOH B 4 510 510 HOH HOH . E 3 HOH B 5 513 513 HOH HOH . E 3 HOH B 6 515 515 HOH HOH . E 3 HOH B 7 516 516 HOH HOH . E 3 HOH B 8 517 517 HOH HOH . E 3 HOH B 9 518 518 HOH HOH . E 3 HOH B 10 523 523 HOH HOH . E 3 HOH B 11 524 524 HOH HOH . E 3 HOH B 12 525 525 HOH HOH . E 3 HOH B 13 526 526 HOH HOH . E 3 HOH B 14 527 527 HOH HOH . E 3 HOH B 15 531 531 HOH HOH . E 3 HOH B 16 534 534 HOH HOH . E 3 HOH B 17 537 537 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GAN . . . C 2 -4.428 16.771 18.898 1 49.56 ? N1 GAN 600 A 1 HETATM 2 C C2 GAN . . . C 2 -4.368 17.218 20.328 1 48.46 ? C2 GAN 600 A 1 HETATM 3 C C3 GAN . . . C 2 -3.362 18.372 20.475 1 51.15 ? C3 GAN 600 A 1 HETATM 4 C C4 GAN . . . C 2 -5.76 17.7 20.729 1 45.67 ? C4 GAN 600 A 1 HETATM 5 O O5 GAN . . . C 2 -6.283 18.59 20.058 1 44.1 ? O5 GAN 600 A 1 HETATM 6 N N6 GAN . . . C 2 -6.357 17.156 21.779 1 44.92 ? N6 GAN 600 A 1 HETATM 7 C C7 GAN . . . C 2 -7.683 17.564 22.218 1 40.84 ? C7 GAN 600 A 1 HETATM 8 C C8 GAN . . . C 2 -8.705 16.717 21.472 1 41.99 ? C8 GAN 600 A 1 HETATM 9 C C9 GAN . . . C 2 -7.694 17.345 23.727 1 42.94 ? C9 GAN 600 A 1 HETATM 10 C C10 GAN . . . C 2 -7.053 18.271 24.548 1 45.91 ? C10 GAN 600 A 1 HETATM 11 C C11 GAN . . . C 2 -7.006 18.13 26.09 1 46.51 ? C11 GAN 600 A 1 HETATM 12 C C12 GAN . . . C 2 -5.896 19.021 26.648 1 45.8 ? C12 GAN 600 A 1 HETATM 13 C C13 GAN . . . C 2 -4.621 18.44 26.061 1 47.2 ? C13 GAN 600 A 1 HETATM 14 C C14 GAN . . . C 2 -3.837 19.234 25.219 1 48.95 ? C14 GAN 600 A 1 HETATM 15 C C15 GAN . . . C 2 -2.721 18.687 24.585 1 45.57 ? C15 GAN 600 A 1 HETATM 16 C C16 GAN . . . C 2 -2.398 17.352 24.789 1 42.26 ? C16 GAN 600 A 1 HETATM 17 C C17 GAN . . . C 2 -3.18 16.566 25.633 1 44.3 ? C17 GAN 600 A 1 HETATM 18 C C18 GAN . . . C 2 -4.29 17.096 26.277 1 43.57 ? C18 GAN 600 A 1 HETATM 19 C C19 GAN . . . C 2 -8.34 18.44 26.767 1 48.84 ? C19 GAN 600 A 1 HETATM 20 C C20 GAN . . . C 2 -8.308 16.071 24.274 1 48.38 ? C20 GAN 600 A 1 HETATM 21 C C21 GAN . . . C 2 -8.842 16.131 25.739 1 52.81 ? C21 GAN 600 A 1 HETATM 22 N N22 GAN . . . C 2 -9.322 17.468 26.209 1 50.77 ? N22 GAN 600 A 1 HETATM 23 C C23 GAN . . . C 2 -10.734 17.552 26.653 1 51.66 ? C23 GAN 600 A 1 HETATM 24 C C24 GAN . . . C 2 -11.512 16.77 25.572 1 54.99 ? C24 GAN 600 A 1 HETATM 25 C C25 GAN . . . C 2 -11.187 17.144 28.089 1 49.93 ? C25 GAN 600 A 1 HETATM 26 O O26 GAN . . . C 2 -10.883 17.863 29.048 1 42.11 ? O26 GAN 600 A 1 HETATM 27 N N27 GAN . . . C 2 -11.916 16.021 28.246 1 49.29 ? N27 GAN 600 A 1 HETATM 28 C C28 GAN . . . C 2 -12.428 15.51 29.515 1 47.54 ? C28 GAN 600 A 1 HETATM 29 C C29 GAN . . . C 2 -13.448 14.302 29.247 1 46.02 ? C29 GAN 600 A 1 HETATM 30 C C30 GAN . . . C 2 -14.296 14.147 30.466 1 44.07 ? C30 GAN 600 A 1 HETATM 31 C C31 GAN . . . C 2 -12.794 12.971 28.962 1 45.25 ? C31 GAN 600 A 1 HETATM 32 C C32 GAN . . . C 2 -11.297 15.075 30.45 1 47.76 ? C32 GAN 600 A 1 HETATM 33 O O33 GAN . . . C 2 -10.354 14.382 30.032 1 54.01 ? O33 GAN 600 A 1 HETATM 34 N N34 GAN . . . C 2 -11.405 15.449 31.711 1 46.85 ? N34 GAN 600 A 1 HETATM 35 C C35 GAN . . . C 2 -10.458 15.095 32.766 1 41.03 ? C35 GAN 600 A 1 HETATM 36 C C37 GAN . . . C 2 -9.235 16.034 33.034 1 40.81 ? C37 GAN 600 A 1 HETATM 37 C C38 GAN . . . C 2 -8.809 16.948 31.916 1 38.9 ? C38 GAN 600 A 1 HETATM 38 C C39 GAN . . . C 2 -8.081 15.07 33.178 1 39.22 ? C39 GAN 600 A 1 HETATM 39 C C40 GAN . . . C 2 -11.39 15.25 33.991 1 42.59 ? C40 GAN 600 A 1 HETATM 40 O O36 GAN . . . C 2 -12.024 16.312 34.142 1 38.28 ? O36 GAN 600 A 1 HETATM 41 O O41 GAN . . . C 2 -11.89 14.167 34.625 1 41.9 ? O41 GAN 600 A 1 HETATM 42 C C42 GAN . . . C 2 -12.454 13.101 33.796 1 39.47 ? C42 GAN 600 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 437 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #