data_1HCN # _model_server_result.job_id 7qudriFEW7nKOnJn_gyY9A _model_server_result.datetime_utc '2025-02-05 04:44:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hcn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":94}' # _entry.id 1HCN # _exptl.entry_id 1HCN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1HCN _cell.length_a 85.1 _cell.length_b 85.1 _cell.length_c 177.7 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HCN _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 42.55 73.698762 29.616667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 7 1_555 A SG CYS 31 A CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf2 A SG CYS 10 A CYS 10 1_555 A SG CYS 60 A CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 28 A CYS 28 1_555 A SG CYS 82 A CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf4 A SG CYS 32 A CYS 32 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf5 A SG CYS 59 A CYS 59 1_555 A SG CYS 87 A CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 B SG CYS 9 B CYS 9 1_555 B SG CYS 57 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf7 B SG CYS 23 B CYS 23 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf8 B SG CYS 26 B CYS 26 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 B SG CYS 34 B CYS 34 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf10 B SG CYS 38 B CYS 38 1_555 B SG CYS 90 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf11 B SG CYS 93 B CYS 93 1_555 B SG CYS 100 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 52 A ASN 52 1_555 C C1 NAG . A NAG 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 A ND2 ASN 78 A ASN 78 1_555 D C1 NAG . A NAG 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1HCN _atom_sites.fract_transf_matrix[1][1] 0.011751 _atom_sites.fract_transf_matrix[1][2] 0.006784 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005627 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 93 52 NAG NAG . D 3 NAG A 1 94 78 NAG NAG . E 4 HOH A 1 302 302 HOH HOH . E 4 HOH A 2 307 307 HOH HOH . E 4 HOH A 3 309 309 HOH HOH . E 4 HOH A 4 313 313 HOH HOH . E 4 HOH A 5 319 319 HOH HOH . E 4 HOH A 6 320 320 HOH HOH . E 4 HOH A 7 321 321 HOH HOH . E 4 HOH A 8 323 323 HOH HOH . E 4 HOH A 9 325 325 HOH HOH . E 4 HOH A 10 326 326 HOH HOH . E 4 HOH A 11 331 331 HOH HOH . E 4 HOH A 12 334 334 HOH HOH . E 4 HOH A 13 338 338 HOH HOH . E 4 HOH A 14 339 339 HOH HOH . E 4 HOH A 15 343 343 HOH HOH . E 4 HOH A 16 345 345 HOH HOH . E 4 HOH A 17 346 346 HOH HOH . E 4 HOH A 18 347 347 HOH HOH . E 4 HOH A 19 348 348 HOH HOH . E 4 HOH A 20 350 350 HOH HOH . E 4 HOH A 21 353 353 HOH HOH . E 4 HOH A 22 355 355 HOH HOH . E 4 HOH A 23 356 356 HOH HOH . F 4 HOH B 1 301 301 HOH HOH . F 4 HOH B 2 303 303 HOH HOH . F 4 HOH B 3 304 304 HOH HOH . F 4 HOH B 4 305 305 HOH HOH . F 4 HOH B 5 306 306 HOH HOH . F 4 HOH B 6 308 308 HOH HOH . F 4 HOH B 7 310 310 HOH HOH . F 4 HOH B 8 311 311 HOH HOH . F 4 HOH B 9 312 312 HOH HOH . F 4 HOH B 10 314 314 HOH HOH . F 4 HOH B 11 315 315 HOH HOH . F 4 HOH B 12 316 316 HOH HOH . F 4 HOH B 13 317 317 HOH HOH . F 4 HOH B 14 318 318 HOH HOH . F 4 HOH B 15 322 322 HOH HOH . F 4 HOH B 16 324 324 HOH HOH . F 4 HOH B 17 327 327 HOH HOH . F 4 HOH B 18 328 328 HOH HOH . F 4 HOH B 19 329 329 HOH HOH . F 4 HOH B 20 330 330 HOH HOH . F 4 HOH B 21 332 332 HOH HOH . F 4 HOH B 22 333 333 HOH HOH . F 4 HOH B 23 335 335 HOH HOH . F 4 HOH B 24 336 336 HOH HOH . F 4 HOH B 25 337 337 HOH HOH . F 4 HOH B 26 340 340 HOH HOH . F 4 HOH B 27 341 341 HOH HOH . F 4 HOH B 28 342 342 HOH HOH . F 4 HOH B 29 344 344 HOH HOH . F 4 HOH B 30 349 349 HOH HOH . F 4 HOH B 31 351 351 HOH HOH . F 4 HOH B 32 352 352 HOH HOH . F 4 HOH B 33 354 354 HOH HOH . F 4 HOH B 34 357 357 HOH HOH . F 4 HOH B 35 358 358 HOH HOH . F 4 HOH B 36 359 359 HOH HOH . F 4 HOH B 37 360 360 HOH HOH . F 4 HOH B 38 361 361 HOH HOH . F 4 HOH B 39 362 362 HOH HOH . F 4 HOH B 40 363 363 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 15.579 29.091 27.69 1 58.77 ? C1 NAG 94 A 1 HETATM 2 C C2 NAG . . . D 3 15.975 29.354 29.152 1 58.06 ? C2 NAG 94 A 1 HETATM 3 C C3 NAG . . . D 3 17.278 28.635 29.436 1 60.69 ? C3 NAG 94 A 1 HETATM 4 C C4 NAG . . . D 3 17.073 27.154 29.17 1 60.52 ? C4 NAG 94 A 1 HETATM 5 C C5 NAG . . . D 3 16.648 26.954 27.718 1 60.2 ? C5 NAG 94 A 1 HETATM 6 C C6 NAG . . . D 3 16.349 25.51 27.396 1 58.72 ? C6 NAG 94 A 1 HETATM 7 C C7 NAG . . . D 3 15.21 31.515 30.019 1 48.37 ? C7 NAG 94 A 1 HETATM 8 C C8 NAG . . . D 3 15.554 32.993 30.119 1 45.63 ? C8 NAG 94 A 1 HETATM 9 N N2 NAG . . . D 3 16.116 30.781 29.382 1 52.17 ? N2 NAG 94 A 1 HETATM 10 O O3 NAG . . . D 3 17.672 28.846 30.785 1 67.04 ? O3 NAG 94 A 1 HETATM 11 O O4 NAG . . . D 3 18.277 26.456 29.421 1 66.46 ? O4 NAG 94 A 1 HETATM 12 O O5 NAG . . . D 3 15.438 27.685 27.456 1 60.15 ? O5 NAG 94 A 1 HETATM 13 O O6 NAG . . . D 3 15.03 25.176 27.803 1 60.16 ? O6 NAG 94 A 1 HETATM 14 O O7 NAG . . . D 3 14.192 31.038 30.506 1 46.12 ? O7 NAG 94 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #