data_1HDC
#
_model_server_result.job_id            nzUn-Wp1gwF8vxzYs975cA 
_model_server_result.datetime_utc      '2024-10-24 04:23:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hdc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    1HDC 
#
_exptl.entry_id    1HDC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              570.757 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARBENOXOLONE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         101.78 
_cell.angle_beta          104.41 
_cell.angle_gamma         96.31 
_cell.entry_id            1HDC 
_cell.length_a            72.05 
_cell.length_b            60.04 
_cell.length_c            59.84 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HDC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C34 H50 O7' 
_chem_comp.formula_weight    570.757 
_chem_comp.id                CBO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARBENOXOLONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 CBO sing 70 n n 
C1 C10 CBO sing 71 n n 
C1 H11 CBO sing 72 n n 
C1 H12A CBO sing 73 n n 
C2 C3 CBO sing 74 n n 
C2 H21 CBO sing 75 n n 
C2 H22 CBO sing 76 n n 
C3 C4 CBO sing 77 n n 
C3 O3 CBO sing 78 n n 
C3 H3 CBO sing 79 n n 
C4 C5 CBO sing 80 n n 
C4 C24 CBO sing 81 n n 
C4 C25 CBO sing 82 n n 
C5 C6 CBO sing 83 n n 
C5 C10 CBO sing 84 n n 
C5 H5 CBO sing 85 n n 
C6 C7 CBO sing 86 n n 
C6 H61 CBO sing 87 n n 
C6 H62 CBO sing 88 n n 
C7 C8 CBO sing 89 n n 
C7 H71 CBO sing 90 n n 
C7 H72 CBO sing 91 n n 
C8 C9 CBO sing 92 n n 
C8 C14 CBO sing 93 n n 
C8 C26 CBO sing 94 n n 
C9 C10 CBO sing 95 n n 
C9 C11 CBO sing 96 n n 
C9 H9 CBO sing 97 n n 
C10 C19 CBO sing 98 n n 
C11 C12 CBO sing 99 n n 
C11 O11 CBO doub 100 n n 
C12 C13 CBO doub 101 n n 
C12 H12 CBO sing 102 n n 
C13 C14 CBO sing 103 n n 
C13 C18 CBO sing 104 n n 
C14 C15 CBO sing 105 n n 
C14 C27 CBO sing 106 n n 
C15 C16 CBO sing 107 n n 
C15 H151 CBO sing 108 n n 
C15 H152 CBO sing 109 n n 
C16 C17 CBO sing 110 n n 
C16 H161 CBO sing 111 n n 
C16 H162 CBO sing 112 n n 
C17 C18 CBO sing 113 n n 
C17 C23 CBO sing 114 n n 
C17 C28 CBO sing 115 n n 
C18 C20 CBO sing 116 n n 
C18 H18 CBO sing 117 n n 
C19 H191 CBO sing 118 n n 
C19 H192 CBO sing 119 n n 
C19 H193 CBO sing 120 n n 
C20 C21 CBO sing 121 n n 
C20 H201 CBO sing 122 n n 
C20 H202 CBO sing 123 n n 
C21 C22 CBO sing 124 n n 
C21 C33 CBO sing 125 n n 
C21 C34 CBO sing 126 n n 
C22 C23 CBO sing 127 n n 
C22 H221 CBO sing 128 n n 
C22 H222 CBO sing 129 n n 
C23 H231 CBO sing 130 n n 
C23 H232 CBO sing 131 n n 
C24 H241 CBO sing 132 n n 
C24 H242 CBO sing 133 n n 
C24 H243 CBO sing 134 n n 
C25 H251 CBO sing 135 n n 
C25 H252 CBO sing 136 n n 
C25 H253 CBO sing 137 n n 
C26 H261 CBO sing 138 n n 
C26 H262 CBO sing 139 n n 
C26 H263 CBO sing 140 n n 
C27 H271 CBO sing 141 n n 
C27 H272 CBO sing 142 n n 
C27 H273 CBO sing 143 n n 
C28 H281 CBO sing 144 n n 
C28 H282 CBO sing 145 n n 
C28 H283 CBO sing 146 n n 
C29 C30 CBO sing 147 n n 
C29 O3 CBO sing 148 n n 
C29 O29 CBO doub 149 n n 
C30 C31 CBO sing 150 n n 
C30 H301 CBO sing 151 n n 
C30 H302 CBO sing 152 n n 
C31 C32 CBO sing 153 n n 
C31 H311 CBO sing 154 n n 
C31 H312 CBO sing 155 n n 
C32 O32 CBO doub 156 n n 
C32 O33 CBO sing 157 n n 
C33 O34 CBO doub 158 n n 
C33 O35 CBO sing 159 n n 
C34 H341 CBO sing 160 n n 
C34 H342 CBO sing 161 n n 
C34 H343 CBO sing 162 n n 
O33 H33 CBO sing 163 n n 
O35 H35 CBO sing 164 n n 
#
_atom_sites.entry_id                     1HDC 
_atom_sites.fract_transf_matrix[1][1]    0.013879 
_atom_sites.fract_transf_matrix[1][2]    0.001535 
_atom_sites.fract_transf_matrix[1][3]    0.004054 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016757 
_atom_sites.fract_transf_matrix[2][3]    0.004152 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017776 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CBO A 1 301 301 CBO CBO . 
F 2 CBO B 1 301 301 CBO CBO . 
G 2 CBO C 1 301 301 CBO CBO . 
H 2 CBO D 1 301 301 CBO CBO . 
I 3 HOH A 1 302 7 HOH HOH . 
I 3 HOH A 2 303 14 HOH HOH . 
I 3 HOH A 3 304 18 HOH HOH . 
I 3 HOH A 4 305 19 HOH HOH . 
I 3 HOH A 5 306 20 HOH HOH . 
J 3 HOH B 1 302 2 HOH HOH . 
J 3 HOH B 2 303 6 HOH HOH . 
J 3 HOH B 3 304 10 HOH HOH . 
J 3 HOH B 4 305 12 HOH HOH . 
J 3 HOH B 5 306 13 HOH HOH . 
J 3 HOH B 6 307 16 HOH HOH . 
J 3 HOH B 7 308 22 HOH HOH . 
J 3 HOH B 8 309 23 HOH HOH . 
J 3 HOH B 9 310 24 HOH HOH . 
J 3 HOH B 10 311 25 HOH HOH . 
K 3 HOH C 1 302 1 HOH HOH . 
K 3 HOH C 2 303 5 HOH HOH . 
K 3 HOH C 3 304 8 HOH HOH . 
K 3 HOH C 4 305 15 HOH HOH . 
L 3 HOH D 1 302 3 HOH HOH . 
L 3 HOH D 2 303 4 HOH HOH . 
L 3 HOH D 3 304 9 HOH HOH . 
L 3 HOH D 4 305 11 HOH HOH . 
L 3 HOH D 5 306 17 HOH HOH . 
L 3 HOH D 6 307 21 HOH HOH . 
L 3 HOH D 7 308 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CBO . . . H 2 -13.795 -3.905 15.421 0.35 27.2 ? C1 CBO 301 D 1 
HETATM 2 C C2 CBO . . . H 2 -14.76 -4.149 14.255 0.35 25.78 ? C2 CBO 301 D 1 
HETATM 3 C C3 CBO . . . H 2 -15.405 -2.898 13.665 0.35 21.64 ? C3 CBO 301 D 1 
HETATM 4 C C4 CBO . . . H 2 -14.48 -1.619 13.47 0.35 23.15 ? C4 CBO 301 D 1 
HETATM 5 C C5 CBO . . . H 2 -13.746 -1.341 14.843 0.35 24.74 ? C5 CBO 301 D 1 
HETATM 6 C C6 CBO . . . H 2 -12.794 -0.082 14.938 0.35 23.47 ? C6 CBO 301 D 1 
HETATM 7 C C7 CBO . . . H 2 -12.84 0.48 16.339 0.35 24.79 ? C7 CBO 301 D 1 
HETATM 8 C C8 CBO . . . H 2 -12.477 -0.665 17.491 0.35 26.83 ? C8 CBO 301 D 1 
HETATM 9 C C9 CBO . . . H 2 -13.12 -2.099 17.123 0.35 26.75 ? C9 CBO 301 D 1 
HETATM 10 C C10 CBO . . . H 2 -13.109 -2.562 15.583 0.35 25.15 ? C10 CBO 301 D 1 
HETATM 11 C C11 CBO . . . H 2 -12.736 -3.121 18.145 0.35 28.99 ? C11 CBO 301 D 1 
HETATM 12 C C12 CBO . . . H 2 -12.77 -2.699 19.528 0.35 28.45 ? C12 CBO 301 D 1 
HETATM 13 C C13 CBO . . . H 2 -12.733 -1.374 19.902 0.35 25.41 ? C13 CBO 301 D 1 
HETATM 14 C C14 CBO . . . H 2 -13.13 -0.296 18.958 0.35 25.43 ? C14 CBO 301 D 1 
HETATM 15 C C15 CBO . . . H 2 -12.551 1.167 19.478 0.35 24.91 ? C15 CBO 301 D 1 
HETATM 16 C C16 CBO . . . H 2 -11.105 1.046 19.98 0.35 26.02 ? C16 CBO 301 D 1 
HETATM 17 C C17 CBO . . . H 2 -10.897 -0.071 21.11 0.35 24.32 ? C17 CBO 301 D 1 
HETATM 18 C C18 CBO . . . H 2 -12.213 -0.959 21.311 0.35 23.79 ? C18 CBO 301 D 1 
HETATM 19 C C19 CBO . . . H 2 -11.739 -3.005 15.061 0.35 24.99 ? C19 CBO 301 D 1 
HETATM 20 C C20 CBO . . . H 2 -13.41 -0.316 22.153 0.35 24.03 ? C20 CBO 301 D 1 
HETATM 21 C C21 CBO . . . H 2 -12.996 0.564 23.386 0.35 22.17 ? C21 CBO 301 D 1 
HETATM 22 C C22 CBO . . . H 2 -11.659 1.373 23.085 0.35 21.61 ? C22 CBO 301 D 1 
HETATM 23 C C23 CBO . . . H 2 -10.538 0.591 22.472 0.35 22.63 ? C23 CBO 301 D 1 
HETATM 24 C C24 CBO . . . H 2 -13.426 -1.685 12.252 0.35 21.01 ? C24 CBO 301 D 1 
HETATM 25 C C25 CBO . . . H 2 -15.421 -0.425 13.158 0.35 25.72 ? C25 CBO 301 D 1 
HETATM 26 C C26 CBO . . . H 2 -10.816 -0.816 17.459 0.35 23.81 ? C26 CBO 301 D 1 
HETATM 27 C C27 CBO . . . H 2 -14.717 -0.239 19.002 0.35 25.45 ? C27 CBO 301 D 1 
HETATM 28 C C28 CBO . . . H 2 -9.7 -0.974 20.705 0.35 25.09 ? C28 CBO 301 D 1 
HETATM 29 C C29 CBO . . . H 2 -17.119 -3.626 11.798 0.35 26.71 ? C29 CBO 301 D 1 
HETATM 30 C C30 CBO . . . H 2 -17.179 -5.06 12.263 0.35 26.91 ? C30 CBO 301 D 1 
HETATM 31 C C31 CBO . . . H 2 -17.493 -6.139 11.152 0.35 29.49 ? C31 CBO 301 D 1 
HETATM 32 C C32 CBO . . . H 2 -16.648 -7.382 11.29 0.35 33.8 ? C32 CBO 301 D 1 
HETATM 33 C C33 CBO . . . H 2 -12.843 -0.338 24.624 0.35 25.85 ? C33 CBO 301 D 1 
HETATM 34 C C34 CBO . . . H 2 -14.172 1.536 23.724 0.35 19.67 ? C34 CBO 301 D 1 
HETATM 35 O O3 CBO . . . H 2 -16.184 -2.971 12.487 0.35 22.47 ? O3 CBO 301 D 1 
HETATM 36 O O11 CBO . . . H 2 -12.338 -4.29 17.846 0.35 35.68 ? O11 CBO 301 D 1 
HETATM 37 O O29 CBO . . . H 2 -17.901 -3.087 11.067 0.35 27.88 ? O29 CBO 301 D 1 
HETATM 38 O O32 CBO . . . H 2 -16.498 -8.06 10.197 0.35 35.22 ? O32 CBO 301 D 1 
HETATM 39 O O33 CBO . . . H 2 -16.125 -7.738 12.405 0.35 35.67 ? O33 CBO 301 D 1 
HETATM 40 O O34 CBO . . . H 2 -11.775 -1.03 24.749 0.35 22.37 ? O34 CBO 301 D 1 
HETATM 41 O O35 CBO . . . H 2 -13.74 -0.345 25.634 0.35 27.21 ? O35 CBO 301 D 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           41 
#