data_1HDF
#
_model_server_result.job_id            bIDk7K0iMpB__FIWOD0z7g 
_model_server_result.datetime_utc      '2024-11-14 03:47:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hdf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1101}' 
#
_entry.id    1HDF 
#
_exptl.entry_id    1HDF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1HDF 
_cell.length_a            41.35 
_cell.length_b            41.35 
_cell.length_c            213.64 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HDF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 B SG CYS 3 B CYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
covale ? covale1 A C SER 93 A SER 93 1_555 A N MSE 94 A MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale2 A C MSE 94 A MSE 94 1_555 A N ILE 95 A ILE 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 B C SER 93 B SER 93 1_555 B N MSE 94 B MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B C MSE 94 B MSE 94 1_555 B N ILE 95 B ILE 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 A O LYS 19 A LYS 19 1_555 C CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc2 A OD1 ASP 45 A ASP 45 1_555 D CA CA . A CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc3 A O VAL 46 A VAL 46 1_555 C CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc4 A OG SER 48 A SER 48 1_555 C CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc5 A O LYS 62 A LYS 62 1_555 D CA CA . A CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc6 A OD1 ASP 89 A ASP 89 1_555 C CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc7 A O ALA 90 A ALA 90 1_555 D CA CA . A CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc8 A OG SER 92 A SER 92 1_555 D CA CA . A CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc9 C CA CA . A CA 1101 1_555 G O HOH . A HOH 2037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc10 C CA CA . A CA 1101 1_555 G O HOH . A HOH 2070 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc11 D CA CA . A CA 1102 1_555 G O HOH . A HOH 2019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? 
metalc ? metalc12 D CA CA . A CA 1102 1_555 G O HOH . A HOH 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc13 D CA CA . A CA 1102 1_555 G O HOH . A HOH 2041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? 
metalc ? metalc14 B O LYS 19 B LYS 19 1_555 F CA CA . B CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc15 B OD1 ASP 45 B ASP 45 1_555 E CA CA . B CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc16 B O VAL 46 B VAL 46 1_555 F CA CA . B CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc17 B OG SER 48 B SER 48 1_555 F CA CA . B CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc18 B O LYS 62 B LYS 62 1_555 E CA CA . B CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc19 B OD1 ASP 89 B ASP 89 1_555 F CA CA . B CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc20 B O ALA 90 B ALA 90 1_555 E CA CA . B CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc21 B OG SER 92 B SER 92 1_555 E CA CA . B CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc22 E CA CA . B CA 1101 1_555 H O HOH . B HOH 2026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
metalc ? metalc23 E CA CA . B CA 1101 1_555 H O HOH . B HOH 2030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? 
metalc ? metalc24 F CA CA . B CA 1102 1_555 H O HOH . B HOH 2029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
metalc ? metalc25 F CA CA . B CA 1102 1_555 H O HOH . B HOH 2049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1HDF 
_atom_sites.fract_transf_matrix[1][1]    0.024184 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024184 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004681 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 1101 1101 CA CA . 
D 2 CA A 1 1102 1102 CA CA . 
E 2 CA B 1 1101 1101 CA CA . 
F 2 CA B 1 1102 1102 CA CA . 
G 3 HOH A 1 2001 2001 HOH HOH . 
G 3 HOH A 2 2002 2002 HOH HOH . 
G 3 HOH A 3 2003 2003 HOH HOH . 
G 3 HOH A 4 2004 2004 HOH HOH . 
G 3 HOH A 5 2005 2005 HOH HOH . 
G 3 HOH A 6 2006 2006 HOH HOH . 
G 3 HOH A 7 2007 2007 HOH HOH . 
G 3 HOH A 8 2008 2008 HOH HOH . 
G 3 HOH A 9 2009 2009 HOH HOH . 
G 3 HOH A 10 2010 2010 HOH HOH . 
G 3 HOH A 11 2011 2011 HOH HOH . 
G 3 HOH A 12 2012 2012 HOH HOH . 
G 3 HOH A 13 2013 2013 HOH HOH . 
G 3 HOH A 14 2014 2014 HOH HOH . 
G 3 HOH A 15 2015 2015 HOH HOH . 
G 3 HOH A 16 2016 2016 HOH HOH . 
G 3 HOH A 17 2017 2017 HOH HOH . 
G 3 HOH A 18 2018 2018 HOH HOH . 
G 3 HOH A 19 2019 2019 HOH HOH . 
G 3 HOH A 20 2020 2020 HOH HOH . 
G 3 HOH A 21 2021 2021 HOH HOH . 
G 3 HOH A 22 2022 2022 HOH HOH . 
G 3 HOH A 23 2023 2023 HOH HOH . 
G 3 HOH A 24 2024 2024 HOH HOH . 
G 3 HOH A 25 2025 2025 HOH HOH . 
G 3 HOH A 26 2026 2026 HOH HOH . 
G 3 HOH A 27 2027 2027 HOH HOH . 
G 3 HOH A 28 2028 2028 HOH HOH . 
G 3 HOH A 29 2029 2029 HOH HOH . 
G 3 HOH A 30 2030 2030 HOH HOH . 
G 3 HOH A 31 2031 2031 HOH HOH . 
G 3 HOH A 32 2032 2032 HOH HOH . 
G 3 HOH A 33 2033 2033 HOH HOH . 
G 3 HOH A 34 2034 2034 HOH HOH . 
G 3 HOH A 35 2035 2035 HOH HOH . 
G 3 HOH A 36 2036 2036 HOH HOH . 
G 3 HOH A 37 2037 2037 HOH HOH . 
G 3 HOH A 38 2038 2038 HOH HOH . 
G 3 HOH A 39 2039 2039 HOH HOH . 
G 3 HOH A 40 2040 2040 HOH HOH . 
G 3 HOH A 41 2041 2041 HOH HOH . 
G 3 HOH A 42 2042 2042 HOH HOH . 
G 3 HOH A 43 2043 2043 HOH HOH . 
G 3 HOH A 44 2044 2044 HOH HOH . 
G 3 HOH A 45 2045 2045 HOH HOH . 
G 3 HOH A 46 2046 2046 HOH HOH . 
G 3 HOH A 47 2047 2047 HOH HOH . 
G 3 HOH A 48 2048 2048 HOH HOH . 
G 3 HOH A 49 2049 2049 HOH HOH . 
G 3 HOH A 50 2050 2050 HOH HOH . 
G 3 HOH A 51 2051 2051 HOH HOH . 
G 3 HOH A 52 2052 2052 HOH HOH . 
G 3 HOH A 53 2053 2053 HOH HOH . 
G 3 HOH A 54 2054 2054 HOH HOH . 
G 3 HOH A 55 2055 2055 HOH HOH . 
G 3 HOH A 56 2056 2056 HOH HOH . 
G 3 HOH A 57 2057 2057 HOH HOH . 
G 3 HOH A 58 2058 2058 HOH HOH . 
G 3 HOH A 59 2059 2059 HOH HOH . 
G 3 HOH A 60 2060 2060 HOH HOH . 
G 3 HOH A 61 2061 2061 HOH HOH . 
G 3 HOH A 62 2062 2062 HOH HOH . 
G 3 HOH A 63 2063 2063 HOH HOH . 
G 3 HOH A 64 2064 2064 HOH HOH . 
G 3 HOH A 65 2065 2065 HOH HOH . 
G 3 HOH A 66 2066 2066 HOH HOH . 
G 3 HOH A 67 2067 2067 HOH HOH . 
G 3 HOH A 68 2068 2068 HOH HOH . 
G 3 HOH A 69 2069 2069 HOH HOH . 
G 3 HOH A 70 2070 2070 HOH HOH . 
G 3 HOH A 71 2071 2071 HOH HOH . 
G 3 HOH A 72 2072 2072 HOH HOH . 
G 3 HOH A 73 2073 2073 HOH HOH . 
G 3 HOH A 74 2074 2074 HOH HOH . 
G 3 HOH A 75 2075 2075 HOH HOH . 
G 3 HOH A 76 2076 2076 HOH HOH . 
H 3 HOH B 1 2001 2001 HOH HOH . 
H 3 HOH B 2 2002 2002 HOH HOH . 
H 3 HOH B 3 2003 2003 HOH HOH . 
H 3 HOH B 4 2004 2004 HOH HOH . 
H 3 HOH B 5 2005 2005 HOH HOH . 
H 3 HOH B 6 2006 2006 HOH HOH . 
H 3 HOH B 7 2007 2007 HOH HOH . 
H 3 HOH B 8 2008 2008 HOH HOH . 
H 3 HOH B 9 2009 2009 HOH HOH . 
H 3 HOH B 10 2010 2010 HOH HOH . 
H 3 HOH B 11 2011 2011 HOH HOH . 
H 3 HOH B 12 2012 2012 HOH HOH . 
H 3 HOH B 13 2013 2013 HOH HOH . 
H 3 HOH B 14 2014 2014 HOH HOH . 
H 3 HOH B 15 2015 2015 HOH HOH . 
H 3 HOH B 16 2016 2016 HOH HOH . 
H 3 HOH B 17 2017 2017 HOH HOH . 
H 3 HOH B 18 2018 2018 HOH HOH . 
H 3 HOH B 19 2019 2019 HOH HOH . 
H 3 HOH B 20 2020 2020 HOH HOH . 
H 3 HOH B 21 2021 2021 HOH HOH . 
H 3 HOH B 22 2022 2022 HOH HOH . 
H 3 HOH B 23 2023 2023 HOH HOH . 
H 3 HOH B 24 2024 2024 HOH HOH . 
H 3 HOH B 25 2025 2025 HOH HOH . 
H 3 HOH B 26 2026 2026 HOH HOH . 
H 3 HOH B 27 2027 2027 HOH HOH . 
H 3 HOH B 28 2028 2028 HOH HOH . 
H 3 HOH B 29 2029 2029 HOH HOH . 
H 3 HOH B 30 2030 2030 HOH HOH . 
H 3 HOH B 31 2031 2031 HOH HOH . 
H 3 HOH B 32 2032 2032 HOH HOH . 
H 3 HOH B 33 2033 2033 HOH HOH . 
H 3 HOH B 34 2034 2034 HOH HOH . 
H 3 HOH B 35 2035 2035 HOH HOH . 
H 3 HOH B 36 2036 2036 HOH HOH . 
H 3 HOH B 37 2037 2037 HOH HOH . 
H 3 HOH B 38 2038 2038 HOH HOH . 
H 3 HOH B 39 2039 2039 HOH HOH . 
H 3 HOH B 40 2040 2040 HOH HOH . 
H 3 HOH B 41 2041 2041 HOH HOH . 
H 3 HOH B 42 2042 2042 HOH HOH . 
H 3 HOH B 43 2043 2043 HOH HOH . 
H 3 HOH B 44 2044 2044 HOH HOH . 
H 3 HOH B 45 2045 2045 HOH HOH . 
H 3 HOH B 46 2046 2046 HOH HOH . 
H 3 HOH B 47 2047 2047 HOH HOH . 
H 3 HOH B 48 2049 2049 HOH HOH . 
H 3 HOH B 49 2050 2050 HOH HOH . 
H 3 HOH B 50 2051 2051 HOH HOH . 
H 3 HOH B 51 2052 2052 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               15.86 
_atom_site.Cartn_y               -2.746 
_atom_site.Cartn_z               25.699 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        17.92 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           1101 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           388 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#