data_1HDF # _model_server_result.job_id qWx48MLjb0jdMZpkmyHp9w _model_server_result.datetime_utc '2024-12-03 18:00:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hdf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1102}' # _entry.id 1HDF # _exptl.entry_id 1HDF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HDF _cell.length_a 41.35 _cell.length_b 41.35 _cell.length_c 213.64 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HDF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 B SG CYS 3 B CYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 A C SER 93 A SER 93 1_555 A N MSE 94 A MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 94 A MSE 94 1_555 A N ILE 95 A ILE 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C SER 93 B SER 93 1_555 B N MSE 94 B MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C MSE 94 B MSE 94 1_555 B N ILE 95 B ILE 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A O LYS 19 A LYS 19 1_555 C CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 A OD1 ASP 45 A ASP 45 1_555 D CA CA . A CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc3 A O VAL 46 A VAL 46 1_555 C CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc4 A OG SER 48 A SER 48 1_555 C CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc5 A O LYS 62 A LYS 62 1_555 D CA CA . A CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc6 A OD1 ASP 89 A ASP 89 1_555 C CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc7 A O ALA 90 A ALA 90 1_555 D CA CA . A CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc8 A OG SER 92 A SER 92 1_555 D CA CA . A CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc9 C CA CA . A CA 1101 1_555 G O HOH . A HOH 2037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc10 C CA CA . A CA 1101 1_555 G O HOH . A HOH 2070 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc11 D CA CA . A CA 1102 1_555 G O HOH . A HOH 2019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc12 D CA CA . A CA 1102 1_555 G O HOH . A HOH 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc13 D CA CA . A CA 1102 1_555 G O HOH . A HOH 2041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc14 B O LYS 19 B LYS 19 1_555 F CA CA . B CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc15 B OD1 ASP 45 B ASP 45 1_555 E CA CA . B CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc16 B O VAL 46 B VAL 46 1_555 F CA CA . B CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc17 B OG SER 48 B SER 48 1_555 F CA CA . B CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc18 B O LYS 62 B LYS 62 1_555 E CA CA . B CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc19 B OD1 ASP 89 B ASP 89 1_555 F CA CA . B CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc20 B O ALA 90 B ALA 90 1_555 E CA CA . B CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc21 B OG SER 92 B SER 92 1_555 E CA CA . B CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc22 E CA CA . B CA 1101 1_555 H O HOH . B HOH 2026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc23 E CA CA . B CA 1101 1_555 H O HOH . B HOH 2030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc24 F CA CA . B CA 1102 1_555 H O HOH . B HOH 2029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc25 F CA CA . B CA 1102 1_555 H O HOH . B HOH 2049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1HDF _atom_sites.fract_transf_matrix[1][1] 0.024184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 1101 1101 CA CA . D 2 CA A 1 1102 1102 CA CA . E 2 CA B 1 1101 1101 CA CA . F 2 CA B 1 1102 1102 CA CA . G 3 HOH A 1 2001 2001 HOH HOH . G 3 HOH A 2 2002 2002 HOH HOH . G 3 HOH A 3 2003 2003 HOH HOH . G 3 HOH A 4 2004 2004 HOH HOH . G 3 HOH A 5 2005 2005 HOH HOH . G 3 HOH A 6 2006 2006 HOH HOH . G 3 HOH A 7 2007 2007 HOH HOH . G 3 HOH A 8 2008 2008 HOH HOH . G 3 HOH A 9 2009 2009 HOH HOH . G 3 HOH A 10 2010 2010 HOH HOH . G 3 HOH A 11 2011 2011 HOH HOH . G 3 HOH A 12 2012 2012 HOH HOH . G 3 HOH A 13 2013 2013 HOH HOH . G 3 HOH A 14 2014 2014 HOH HOH . G 3 HOH A 15 2015 2015 HOH HOH . G 3 HOH A 16 2016 2016 HOH HOH . G 3 HOH A 17 2017 2017 HOH HOH . G 3 HOH A 18 2018 2018 HOH HOH . G 3 HOH A 19 2019 2019 HOH HOH . G 3 HOH A 20 2020 2020 HOH HOH . G 3 HOH A 21 2021 2021 HOH HOH . G 3 HOH A 22 2022 2022 HOH HOH . G 3 HOH A 23 2023 2023 HOH HOH . G 3 HOH A 24 2024 2024 HOH HOH . G 3 HOH A 25 2025 2025 HOH HOH . G 3 HOH A 26 2026 2026 HOH HOH . G 3 HOH A 27 2027 2027 HOH HOH . G 3 HOH A 28 2028 2028 HOH HOH . G 3 HOH A 29 2029 2029 HOH HOH . G 3 HOH A 30 2030 2030 HOH HOH . G 3 HOH A 31 2031 2031 HOH HOH . G 3 HOH A 32 2032 2032 HOH HOH . G 3 HOH A 33 2033 2033 HOH HOH . G 3 HOH A 34 2034 2034 HOH HOH . G 3 HOH A 35 2035 2035 HOH HOH . G 3 HOH A 36 2036 2036 HOH HOH . G 3 HOH A 37 2037 2037 HOH HOH . G 3 HOH A 38 2038 2038 HOH HOH . G 3 HOH A 39 2039 2039 HOH HOH . G 3 HOH A 40 2040 2040 HOH HOH . G 3 HOH A 41 2041 2041 HOH HOH . G 3 HOH A 42 2042 2042 HOH HOH . G 3 HOH A 43 2043 2043 HOH HOH . G 3 HOH A 44 2044 2044 HOH HOH . G 3 HOH A 45 2045 2045 HOH HOH . G 3 HOH A 46 2046 2046 HOH HOH . G 3 HOH A 47 2047 2047 HOH HOH . G 3 HOH A 48 2048 2048 HOH HOH . G 3 HOH A 49 2049 2049 HOH HOH . G 3 HOH A 50 2050 2050 HOH HOH . G 3 HOH A 51 2051 2051 HOH HOH . G 3 HOH A 52 2052 2052 HOH HOH . G 3 HOH A 53 2053 2053 HOH HOH . G 3 HOH A 54 2054 2054 HOH HOH . G 3 HOH A 55 2055 2055 HOH HOH . G 3 HOH A 56 2056 2056 HOH HOH . G 3 HOH A 57 2057 2057 HOH HOH . G 3 HOH A 58 2058 2058 HOH HOH . G 3 HOH A 59 2059 2059 HOH HOH . G 3 HOH A 60 2060 2060 HOH HOH . G 3 HOH A 61 2061 2061 HOH HOH . G 3 HOH A 62 2062 2062 HOH HOH . G 3 HOH A 63 2063 2063 HOH HOH . G 3 HOH A 64 2064 2064 HOH HOH . G 3 HOH A 65 2065 2065 HOH HOH . G 3 HOH A 66 2066 2066 HOH HOH . G 3 HOH A 67 2067 2067 HOH HOH . G 3 HOH A 68 2068 2068 HOH HOH . G 3 HOH A 69 2069 2069 HOH HOH . G 3 HOH A 70 2070 2070 HOH HOH . G 3 HOH A 71 2071 2071 HOH HOH . G 3 HOH A 72 2072 2072 HOH HOH . G 3 HOH A 73 2073 2073 HOH HOH . G 3 HOH A 74 2074 2074 HOH HOH . G 3 HOH A 75 2075 2075 HOH HOH . G 3 HOH A 76 2076 2076 HOH HOH . H 3 HOH B 1 2001 2001 HOH HOH . H 3 HOH B 2 2002 2002 HOH HOH . H 3 HOH B 3 2003 2003 HOH HOH . H 3 HOH B 4 2004 2004 HOH HOH . H 3 HOH B 5 2005 2005 HOH HOH . H 3 HOH B 6 2006 2006 HOH HOH . H 3 HOH B 7 2007 2007 HOH HOH . H 3 HOH B 8 2008 2008 HOH HOH . H 3 HOH B 9 2009 2009 HOH HOH . H 3 HOH B 10 2010 2010 HOH HOH . H 3 HOH B 11 2011 2011 HOH HOH . H 3 HOH B 12 2012 2012 HOH HOH . H 3 HOH B 13 2013 2013 HOH HOH . H 3 HOH B 14 2014 2014 HOH HOH . H 3 HOH B 15 2015 2015 HOH HOH . H 3 HOH B 16 2016 2016 HOH HOH . H 3 HOH B 17 2017 2017 HOH HOH . H 3 HOH B 18 2018 2018 HOH HOH . H 3 HOH B 19 2019 2019 HOH HOH . H 3 HOH B 20 2020 2020 HOH HOH . H 3 HOH B 21 2021 2021 HOH HOH . H 3 HOH B 22 2022 2022 HOH HOH . H 3 HOH B 23 2023 2023 HOH HOH . H 3 HOH B 24 2024 2024 HOH HOH . H 3 HOH B 25 2025 2025 HOH HOH . H 3 HOH B 26 2026 2026 HOH HOH . H 3 HOH B 27 2027 2027 HOH HOH . H 3 HOH B 28 2028 2028 HOH HOH . H 3 HOH B 29 2029 2029 HOH HOH . H 3 HOH B 30 2030 2030 HOH HOH . H 3 HOH B 31 2031 2031 HOH HOH . H 3 HOH B 32 2032 2032 HOH HOH . H 3 HOH B 33 2033 2033 HOH HOH . H 3 HOH B 34 2034 2034 HOH HOH . H 3 HOH B 35 2035 2035 HOH HOH . H 3 HOH B 36 2036 2036 HOH HOH . H 3 HOH B 37 2037 2037 HOH HOH . H 3 HOH B 38 2038 2038 HOH HOH . H 3 HOH B 39 2039 2039 HOH HOH . H 3 HOH B 40 2040 2040 HOH HOH . H 3 HOH B 41 2041 2041 HOH HOH . H 3 HOH B 42 2042 2042 HOH HOH . H 3 HOH B 43 2043 2043 HOH HOH . H 3 HOH B 44 2044 2044 HOH HOH . H 3 HOH B 45 2045 2045 HOH HOH . H 3 HOH B 46 2046 2046 HOH HOH . H 3 HOH B 47 2047 2047 HOH HOH . H 3 HOH B 48 2049 2049 HOH HOH . H 3 HOH B 49 2050 2050 HOH HOH . H 3 HOH B 50 2051 2051 HOH HOH . H 3 HOH B 51 2052 2052 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.078 _atom_site.Cartn_y -0.578 _atom_site.Cartn_z 21.252 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #