data_1HDR # _model_server_result.job_id fsjvmiuuGH-SBQLQ-Ldjqw _model_server_result.datetime_utc '2024-11-05 05:04:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hdr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":244}' # _entry.id 1HDR # _exptl.entry_id 1HDR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HDR _cell.length_a 50.65 _cell.length_b 138.65 _cell.length_c 65.01 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 50.65 0 32.505 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1HDR _atom_sites.fract_transf_matrix[1][1] 0.019743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 244 4 NAD NAD . C 3 HOH A 1 245 245 HOH HOH . C 3 HOH A 2 246 246 HOH HOH . C 3 HOH A 3 247 247 HOH HOH . C 3 HOH A 4 248 248 HOH HOH . C 3 HOH A 5 249 249 HOH HOH . C 3 HOH A 6 250 250 HOH HOH . C 3 HOH A 7 251 251 HOH HOH . C 3 HOH A 8 252 252 HOH HOH . C 3 HOH A 9 253 253 HOH HOH . C 3 HOH A 10 254 254 HOH HOH . C 3 HOH A 11 255 255 HOH HOH . C 3 HOH A 12 256 256 HOH HOH . C 3 HOH A 13 257 257 HOH HOH . C 3 HOH A 14 258 258 HOH HOH . C 3 HOH A 15 259 259 HOH HOH . C 3 HOH A 16 260 260 HOH HOH . C 3 HOH A 17 261 261 HOH HOH . C 3 HOH A 18 262 262 HOH HOH . C 3 HOH A 19 263 263 HOH HOH . C 3 HOH A 20 264 264 HOH HOH . C 3 HOH A 21 265 265 HOH HOH . C 3 HOH A 22 266 266 HOH HOH . C 3 HOH A 23 267 267 HOH HOH . C 3 HOH A 24 268 268 HOH HOH . C 3 HOH A 25 269 269 HOH HOH . C 3 HOH A 26 270 270 HOH HOH . C 3 HOH A 27 271 271 HOH HOH . C 3 HOH A 28 272 272 HOH HOH . C 3 HOH A 29 273 273 HOH HOH . C 3 HOH A 30 274 274 HOH HOH . C 3 HOH A 31 275 275 HOH HOH . C 3 HOH A 32 276 276 HOH HOH . C 3 HOH A 33 377 377 HOH HOH . C 3 HOH A 34 378 378 HOH HOH . C 3 HOH A 35 379 379 HOH HOH . C 3 HOH A 36 380 380 HOH HOH . C 3 HOH A 37 381 381 HOH HOH . C 3 HOH A 38 382 382 HOH HOH . C 3 HOH A 39 383 383 HOH HOH . C 3 HOH A 40 384 384 HOH HOH . C 3 HOH A 41 385 385 HOH HOH . C 3 HOH A 42 386 386 HOH HOH . C 3 HOH A 43 387 387 HOH HOH . C 3 HOH A 44 388 388 HOH HOH . C 3 HOH A 45 389 389 HOH HOH . C 3 HOH A 46 390 390 HOH HOH . C 3 HOH A 47 391 391 HOH HOH . C 3 HOH A 48 392 392 HOH HOH . C 3 HOH A 49 393 393 HOH HOH . C 3 HOH A 50 394 394 HOH HOH . C 3 HOH A 51 395 395 HOH HOH . C 3 HOH A 52 396 396 HOH HOH . C 3 HOH A 53 397 397 HOH HOH . C 3 HOH A 54 398 398 HOH HOH . C 3 HOH A 55 399 399 HOH HOH . C 3 HOH A 56 400 400 HOH HOH . C 3 HOH A 57 401 401 HOH HOH . C 3 HOH A 58 402 402 HOH HOH . C 3 HOH A 59 403 403 HOH HOH . C 3 HOH A 60 404 404 HOH HOH . C 3 HOH A 61 405 405 HOH HOH . C 3 HOH A 62 406 406 HOH HOH . C 3 HOH A 63 407 407 HOH HOH . C 3 HOH A 64 408 408 HOH HOH . C 3 HOH A 65 409 409 HOH HOH . C 3 HOH A 66 410 410 HOH HOH . C 3 HOH A 67 411 411 HOH HOH . C 3 HOH A 68 412 412 HOH HOH . C 3 HOH A 69 413 413 HOH HOH . C 3 HOH A 70 414 414 HOH HOH . C 3 HOH A 71 415 415 HOH HOH . C 3 HOH A 72 416 416 HOH HOH . C 3 HOH A 73 417 417 HOH HOH . C 3 HOH A 74 418 418 HOH HOH . C 3 HOH A 75 419 419 HOH HOH . C 3 HOH A 76 420 420 HOH HOH . C 3 HOH A 77 421 421 HOH HOH . C 3 HOH A 78 422 422 HOH HOH . C 3 HOH A 79 423 423 HOH HOH . C 3 HOH A 80 424 424 HOH HOH . C 3 HOH A 81 425 425 HOH HOH . C 3 HOH A 82 426 426 HOH HOH . C 3 HOH A 83 427 427 HOH HOH . C 3 HOH A 84 428 428 HOH HOH . C 3 HOH A 85 429 429 HOH HOH . C 3 HOH A 86 430 430 HOH HOH . C 3 HOH A 87 431 431 HOH HOH . C 3 HOH A 88 432 432 HOH HOH . C 3 HOH A 89 433 433 HOH HOH . C 3 HOH A 90 434 434 HOH HOH . C 3 HOH A 91 435 435 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 29.214 45.249 34.522 0.5 26.56 ? PA NAD 244 A 1 HETATM 2 O O1A NAD . . . B 2 30.096 44.388 33.706 0.5 28.74 ? O1A NAD 244 A 1 HETATM 3 O O2A NAD . . . B 2 29.799 45.311 35.878 0.5 26.3 ? O2A NAD 244 A 1 HETATM 4 O O5B NAD . . . B 2 27.704 44.648 34.588 0.5 25.96 ? O5B NAD 244 A 1 HETATM 5 C C5B NAD . . . B 2 27.133 44.184 33.35 0.5 24.87 ? C5B NAD 244 A 1 HETATM 6 C C4B NAD . . . B 2 26.256 42.943 33.6 0.5 23.57 ? C4B NAD 244 A 1 HETATM 7 O O4B NAD . . . B 2 25.285 42.812 32.553 0.5 24.27 ? O4B NAD 244 A 1 HETATM 8 C C3B NAD . . . B 2 27.11 41.677 33.577 0.5 24.23 ? C3B NAD 244 A 1 HETATM 9 O O3B NAD . . . B 2 26.751 40.888 34.706 0.5 22.24 ? O3B NAD 244 A 1 HETATM 10 C C2B NAD . . . B 2 26.726 40.953 32.284 0.5 24.85 ? C2B NAD 244 A 1 HETATM 11 O O2B NAD . . . B 2 26.684 39.531 32.497 0.5 23 ? O2B NAD 244 A 1 HETATM 12 C C1B NAD . . . B 2 25.317 41.477 32.006 0.5 23.62 ? C1B NAD 244 A 1 HETATM 13 N N9A NAD . . . B 2 24.95 41.553 30.652 0.5 22.4 ? N9A NAD 244 A 1 HETATM 14 C C8A NAD . . . B 2 25.949 41.343 29.672 0.5 22.83 ? C8A NAD 244 A 1 HETATM 15 N N7A NAD . . . B 2 25.448 40.422 28.724 0.5 22.66 ? N7A NAD 244 A 1 HETATM 16 C C5A NAD . . . B 2 24.207 40.097 29.194 0.5 21.88 ? C5A NAD 244 A 1 HETATM 17 C C6A NAD . . . B 2 23.319 39.257 28.613 0.5 21.5 ? C6A NAD 244 A 1 HETATM 18 N N6A NAD . . . B 2 23.607 38.642 27.415 0.5 22.31 ? N6A NAD 244 A 1 HETATM 19 N N1A NAD . . . B 2 22.105 39.026 29.206 0.5 20.39 ? N1A NAD 244 A 1 HETATM 20 C C2A NAD . . . B 2 21.826 39.705 30.399 0.5 19.7 ? C2A NAD 244 A 1 HETATM 21 N N3A NAD . . . B 2 22.746 40.592 30.957 0.5 19.43 ? N3A NAD 244 A 1 HETATM 22 C C4A NAD . . . B 2 23.924 40.731 30.291 0.5 21.04 ? C4A NAD 244 A 1 HETATM 23 O O3 NAD . . . B 2 29.161 46.714 33.843 0.5 28.47 ? O3 NAD 244 A 1 HETATM 24 P PN NAD . . . B 2 28.992 47.972 34.862 0.5 29.2 ? PN NAD 244 A 1 HETATM 25 O O1N NAD . . . B 2 30.304 48.294 35.472 0.5 27.75 ? O1N NAD 244 A 1 HETATM 26 O O2N NAD . . . B 2 28.008 47.652 35.916 0.5 26.38 ? O2N NAD 244 A 1 HETATM 27 O O5D NAD . . . B 2 28.505 49.252 33.981 0.5 29.3 ? O5D NAD 244 A 1 HETATM 28 C C5D NAD . . . B 2 27.125 49.231 33.57 0.5 28.93 ? C5D NAD 244 A 1 HETATM 29 C C4D NAD . . . B 2 26.954 49.954 32.228 0.5 30.05 ? C4D NAD 244 A 1 HETATM 30 O O4D NAD . . . B 2 27.62 51.248 32.227 0.5 31.67 ? O4D NAD 244 A 1 HETATM 31 C C3D NAD . . . B 2 27.57 49.104 31.11 0.5 30.59 ? C3D NAD 244 A 1 HETATM 32 O O3D NAD . . . B 2 26.669 49.141 29.995 0.5 32.3 ? O3D NAD 244 A 1 HETATM 33 C C2D NAD . . . B 2 28.864 49.83 30.753 0.5 30.67 ? C2D NAD 244 A 1 HETATM 34 O O2D NAD . . . B 2 29.182 49.662 29.357 0.5 28.61 ? O2D NAD 244 A 1 HETATM 35 C C1D NAD . . . B 2 28.511 51.303 31.069 0.5 30.38 ? C1D NAD 244 A 1 HETATM 36 N N1N NAD . . . B 2 29.632 52.074 31.368 0.5 28.6 ? N1N NAD 244 A 1 HETATM 37 C C2N NAD . . . B 2 30.477 51.59 32.325 0.5 26.58 ? C2N NAD 244 A 1 HETATM 38 C C3N NAD . . . B 2 31.79 51.979 32.336 0.5 24.41 ? C3N NAD 244 A 1 HETATM 39 C C7N NAD . . . B 2 32.654 51.421 33.263 0.5 21.3 ? C7N NAD 244 A 1 HETATM 40 O O7N NAD . . . B 2 32.226 50.364 34.049 0.5 20.05 ? O7N NAD 244 A 1 HETATM 41 N N7N NAD . . . B 2 33.934 51.89 33.407 0.5 15.86 ? N7N NAD 244 A 1 HETATM 42 C C4N NAD . . . B 2 32.23 52.88 31.391 0.5 25.96 ? C4N NAD 244 A 1 HETATM 43 C C5N NAD . . . B 2 31.374 53.343 30.422 0.5 27.24 ? C5N NAD 244 A 1 HETATM 44 C C6N NAD . . . B 2 30.061 52.929 30.394 0.5 28.36 ? C6N NAD 244 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #