data_1HDS
#
_model_server_result.job_id            VlxucWW_Frtz6RYmpWkhHQ 
_model_server_result.datetime_utc      '2025-02-05 17:05:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hds 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":146}' 
#
_entry.id    1HDS 
#
_exptl.entry_id    1HDS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.15 
_cell.angle_gamma         90 
_cell.entry_id            1HDS 
_cell.length_a            163.5 
_cell.length_b            70.83 
_cell.length_c            65.95 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HDS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 E FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? 
metalc ? metalc2 B NE2 HIS 91 B HIS 91 1_555 F FE HEM . B HEM 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc3 C NE2 HIS 87 C HIS 87 1_555 G FE HEM . C HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     1HDS 
_atom_sites.fract_transf_matrix[1][1]    0.006116 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000444 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014118 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015203 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 HEM A 1 142 1 HEM HEM . 
F 3 HEM B 1 146 1 HEM HEM . 
G 3 HEM C 1 142 1 HEM HEM . 
H 3 HEM D 1 146 1 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . H 3 23.656 -22.253 12.627 1 13.19 ? CHA HEM 146 D 1 
HETATM 2 C CHB HEM . . . H 3 27.144 -18.062 11.649 1 12.34 ? CHB HEM 146 D 1 
HETATM 3 C CHC HEM . . . H 3 22.75 -15.915 10.436 1 12.42 ? CHC HEM 146 D 1 
HETATM 4 C CHD HEM . . . H 3 20.219 -19.857 11.17 1 13.84 ? CHD HEM 146 D 1 
HETATM 5 C C1A HEM . . . H 3 25.326 -21.269 12.484 1 12.72 ? C1A HEM 146 D 1 
HETATM 6 C C2A HEM . . . H 3 26.459 -21.623 12.714 1 12.23 ? C2A HEM 146 D 1 
HETATM 7 C C3A HEM . . . H 3 27.149 -20.407 12.472 1 12.59 ? C3A HEM 146 D 1 
HETATM 8 C C4A HEM . . . H 3 26.675 -19.456 12.055 1 12.56 ? C4A HEM 146 D 1 
HETATM 9 C CMA HEM . . . H 3 28.466 -20.318 12.305 1 12.82 ? CMA HEM 146 D 1 
HETATM 10 C CAA HEM . . . H 3 26.375 -22.952 12.997 1 11.6 ? CAA HEM 146 D 1 
HETATM 11 C CBA HEM . . . H 3 28.019 -23.202 13.592 1 10.78 ? CBA HEM 146 D 1 
HETATM 12 C CGA HEM . . . H 3 27.743 -24.912 14.55 1 10.33 ? CGA HEM 146 D 1 
HETATM 13 O O1A HEM . . . H 3 26.665 -25.429 14.514 1 10.02 ? O1A HEM 146 D 1 
HETATM 14 O O2A HEM . . . H 3 29.051 -25.387 14.991 1 9.86 ? O2A HEM 146 D 1 
HETATM 15 C C1B HEM . . . H 3 26.223 -16.999 11.313 1 12.33 ? C1B HEM 146 D 1 
HETATM 16 C C2B HEM . . . H 3 26.212 -15.924 10.588 1 12.39 ? C2B HEM 146 D 1 
HETATM 17 C C3B HEM . . . H 3 24.984 -15.208 10.228 1 12.18 ? C3B HEM 146 D 1 
HETATM 18 C C4B HEM . . . H 3 24.073 -16.059 10.416 1 12.36 ? C4B HEM 146 D 1 
HETATM 19 C CMB HEM . . . H 3 27.928 -15.424 10.38 1 12.44 ? CMB HEM 146 D 1 
HETATM 20 C CAB HEM . . . H 3 24.857 -13.901 9.902 1 11.78 ? CAB HEM 146 D 1 
HETATM 21 C CBB HEM . . . H 3 24.102 -13.053 9.07 1 11.91 ? CBB HEM 146 D 1 
HETATM 22 C C1C HEM . . . H 3 21.745 -16.531 10.532 1 13.27 ? C1C HEM 146 D 1 
HETATM 23 C C2C HEM . . . H 3 20.38 -15.931 10.276 1 13.65 ? C2C HEM 146 D 1 
HETATM 24 C C3C HEM . . . H 3 19.421 -17.073 10.477 1 13.87 ? C3C HEM 146 D 1 
HETATM 25 C C4C HEM . . . H 3 20.612 -18.333 11.068 1 13.54 ? C4C HEM 146 D 1 
HETATM 26 C CMC HEM . . . H 3 20.205 -14.838 9.944 1 14.01 ? CMC HEM 146 D 1 
HETATM 27 C CAC HEM . . . H 3 18.072 -17.548 10.42 1 13.76 ? CAC HEM 146 D 1 
HETATM 28 C CBC HEM . . . H 3 17.961 -17.771 9.477 1 14.16 ? CBC HEM 146 D 1 
HETATM 29 C C1D HEM . . . H 3 20.726 -20.933 11.577 1 13.99 ? C1D HEM 146 D 1 
HETATM 30 C C2D HEM . . . H 3 20.279 -22.166 11.77 1 14.03 ? C2D HEM 146 D 1 
HETATM 31 C C3D HEM . . . H 3 21.358 -23.026 12.49 1 14.22 ? C3D HEM 146 D 1 
HETATM 32 C C4D HEM . . . H 3 22.621 -21.931 12.492 1 14.03 ? C4D HEM 146 D 1 
HETATM 33 C CMD HEM . . . H 3 19.274 -22.3 11.588 1 13.7 ? CMD HEM 146 D 1 
HETATM 34 C CAD HEM . . . H 3 21.439 -24.005 12.804 1 15 ? CAD HEM 146 D 1 
HETATM 35 C CBD HEM . . . H 3 21.366 -24.453 14.235 1 16.12 ? CBD HEM 146 D 1 
HETATM 36 C CGD HEM . . . H 3 19.551 -25.485 14.43 1 16.66 ? CGD HEM 146 D 1 
HETATM 37 O O1D HEM . . . H 3 19.879 -26.589 14.766 1 17.18 ? O1D HEM 146 D 1 
HETATM 38 O O2D HEM . . . H 3 18.302 -25.043 14.403 1 17.35 ? O2D HEM 146 D 1 
HETATM 39 N NA HEM . . . H 3 25.037 -20.007 12.055 1 12.69 ? NA HEM 146 D 1 
HETATM 40 N NB HEM . . . H 3 24.396 -17.303 11.255 1 12.36 ? NB HEM 146 D 1 
HETATM 41 N NC HEM . . . H 3 21.801 -17.816 11.091 1 13.22 ? NC HEM 146 D 1 
HETATM 42 N ND HEM . . . H 3 22.256 -20.513 11.755 1 13.74 ? ND HEM 146 D 1 
HETATM 43 FE FE HEM . . . H 3 23.359 -19.012 11.521 1 12.8 ? FE HEM 146 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#