data_1HDT
#
_model_server_result.job_id            8UpY_jpzGGnOi3mMkMJqiQ 
_model_server_result.datetime_utc      '2024-11-21 17:46:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hdt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    1HDT 
#
_exptl.entry_id    1HDT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              554.638 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl N-(4-carbamimidamidobutanoyl)-L-phenylalanyl-L-allothreonyl-L-phenylalaninate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1HDT 
_cell.length_a            108.97 
_cell.length_b            80.92 
_cell.length_c            46.17 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HDT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C28 H38 N6 O6' 
_chem_comp.formula_weight    554.638 
_chem_comp.id                0E7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl N-(4-carbamimidamidobutanoyl)-L-phenylalanyl-L-allothreonyl-L-phenylalaninate' 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     BMS-183507 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O 0E7 doub 1 n n 
C CA 0E7 sing 2 n n 
CA CB 0E7 sing 3 n n 
CA HA1 0E7 sing 4 n n 
CA HA2 0E7 sing 5 n n 
CB CD 0E7 sing 6 n n 
CB HB1 0E7 sing 7 n n 
CB HB2 0E7 sing 8 n n 
CD NE 0E7 sing 9 n n 
CD HD1 0E7 sing 10 n n 
CD HD2 0E7 sing 11 n n 
NE CZ 0E7 sing 12 n n 
NE HNE 0E7 sing 13 n n 
CZ NH1 0E7 doub 14 n n 
CZ NH2 0E7 sing 15 n n 
NH1 HH1 0E7 sing 16 n n 
NH2 HH21 0E7 sing 17 n n 
NH2 HH22 0E7 sing 18 n n 
N CA1 0E7 sing 19 n n 
N H 0E7 sing 20 n n 
CA1 C1 0E7 sing 21 n n 
CA1 CB1 0E7 sing 22 n n 
CA1 HA 0E7 sing 23 n n 
C1 O1 0E7 doub 24 n n 
CB1 CG 0E7 sing 25 n n 
CB1 HB21 0E7 sing 26 n n 
CB1 HB3 0E7 sing 27 n n 
CG CD1 0E7 doub 28 n y 
CG CD2 0E7 sing 29 n y 
CD1 CE1 0E7 sing 30 n y 
CD1 HD11 0E7 sing 31 n n 
CD2 CE2 0E7 doub 32 n y 
CD2 HD21 0E7 sing 33 n n 
CE1 CZ1 0E7 doub 34 n y 
CE1 HE1 0E7 sing 35 n n 
CE2 CZ1 0E7 sing 36 n y 
CE2 HE2 0E7 sing 37 n n 
CZ1 HZ 0E7 sing 38 n n 
N1 CA2 0E7 sing 39 n n 
N1 H1 0E7 sing 40 n n 
CA2 CB2 0E7 sing 41 n n 
CA2 C2 0E7 sing 42 n n 
CA2 HA3 0E7 sing 43 n n 
CB2 CG2 0E7 sing 44 n n 
CB2 OG1 0E7 sing 45 n n 
CB2 HB 0E7 sing 46 n n 
CG2 HG21 0E7 sing 47 n n 
CG2 HG22 0E7 sing 48 n n 
CG2 HG23 0E7 sing 49 n n 
OG1 HG1 0E7 sing 50 n n 
C2 O2 0E7 doub 51 n n 
N2 CA3 0E7 sing 52 n n 
N2 HN2 0E7 sing 53 n n 
CA3 C3 0E7 sing 54 n n 
CA3 CB3 0E7 sing 55 n n 
CA3 HA4 0E7 sing 56 n n 
C3 O3 0E7 doub 57 n n 
C3 OXT 0E7 sing 58 n n 
CB3 CG1 0E7 sing 59 n n 
CB3 HBC1 0E7 sing 60 n n 
CB3 HBC2 0E7 sing 61 n n 
CG1 CD11 0E7 sing 62 n y 
CG1 CD21 0E7 doub 63 n y 
CD11 CE11 0E7 doub 64 n y 
CD11 HD12 0E7 sing 65 n n 
CD21 CE21 0E7 sing 66 n y 
CD21 HD22 0E7 sing 67 n n 
CE11 CZ2 0E7 sing 68 n y 
CE11 HE11 0E7 sing 69 n n 
CE21 CZ2 0E7 doub 70 n y 
CE21 HE21 0E7 sing 71 n n 
CZ2 HZ1 0E7 sing 72 n n 
CM HMC1 0E7 sing 73 n n 
OXT CM 0E7 sing 74 n n 
CM HMC2 0E7 sing 75 n n 
CM HMC3 0E7 sing 76 n n 
C N 0E7 sing 77 n n 
C1 N1 0E7 sing 78 n n 
C2 N2 0E7 sing 79 n n 
#
_atom_sites.entry_id                     1HDT 
_atom_sites.fract_transf_matrix[1][1]    0.009177 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012358 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021659 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 0E7 H 1 1 1 0E7 ALG . 
E 5 HOH L 1 649 649 HOH HOH . 
E 5 HOH L 2 650 650 HOH HOH . 
E 5 HOH L 3 657 657 HOH HOH . 
E 5 HOH L 4 658 658 HOH HOH . 
E 5 HOH L 5 683 683 HOH HOH . 
E 5 HOH L 6 685 685 HOH HOH . 
E 5 HOH L 7 693 693 HOH HOH . 
F 5 HOH H 1 601 601 HOH HOH . 
F 5 HOH H 2 602 602 HOH HOH . 
F 5 HOH H 3 603 603 HOH HOH . 
F 5 HOH H 4 605 605 HOH HOH . 
F 5 HOH H 5 606 606 HOH HOH . 
F 5 HOH H 6 607 607 HOH HOH . 
F 5 HOH H 7 608 608 HOH HOH . 
F 5 HOH H 8 609 609 HOH HOH . 
F 5 HOH H 9 611 611 HOH HOH . 
F 5 HOH H 10 612 612 HOH HOH . 
F 5 HOH H 11 614 614 HOH HOH . 
F 5 HOH H 12 615 615 HOH HOH . 
F 5 HOH H 13 616 616 HOH HOH . 
F 5 HOH H 14 617 617 HOH HOH . 
F 5 HOH H 15 619 619 HOH HOH . 
F 5 HOH H 16 620 620 HOH HOH . 
F 5 HOH H 17 621 621 HOH HOH . 
F 5 HOH H 18 622 622 HOH HOH . 
F 5 HOH H 19 623 623 HOH HOH . 
F 5 HOH H 20 624 624 HOH HOH . 
F 5 HOH H 21 625 625 HOH HOH . 
F 5 HOH H 22 627 627 HOH HOH . 
F 5 HOH H 23 628 628 HOH HOH . 
F 5 HOH H 24 630 630 HOH HOH . 
F 5 HOH H 25 631 631 HOH HOH . 
F 5 HOH H 26 633 633 HOH HOH . 
F 5 HOH H 27 635 635 HOH HOH . 
F 5 HOH H 28 636 636 HOH HOH . 
F 5 HOH H 29 637 637 HOH HOH . 
F 5 HOH H 30 638 638 HOH HOH . 
F 5 HOH H 31 639 639 HOH HOH . 
F 5 HOH H 32 640 640 HOH HOH . 
F 5 HOH H 33 641 641 HOH HOH . 
F 5 HOH H 34 642 642 HOH HOH . 
F 5 HOH H 35 644 644 HOH HOH . 
F 5 HOH H 36 645 645 HOH HOH . 
F 5 HOH H 37 646 646 HOH HOH . 
F 5 HOH H 38 647 647 HOH HOH . 
F 5 HOH H 39 648 648 HOH HOH . 
F 5 HOH H 40 651 651 HOH HOH . 
F 5 HOH H 41 653 653 HOH HOH . 
F 5 HOH H 42 654 654 HOH HOH . 
F 5 HOH H 43 655 655 HOH HOH . 
F 5 HOH H 44 656 656 HOH HOH . 
F 5 HOH H 45 659 659 HOH HOH . 
F 5 HOH H 46 664 664 HOH HOH . 
F 5 HOH H 47 665 665 HOH HOH . 
F 5 HOH H 48 667 667 HOH HOH . 
F 5 HOH H 49 668 668 HOH HOH . 
F 5 HOH H 50 669 669 HOH HOH . 
F 5 HOH H 51 670 670 HOH HOH . 
F 5 HOH H 52 673 673 HOH HOH . 
F 5 HOH H 53 674 674 HOH HOH . 
F 5 HOH H 54 675 675 HOH HOH . 
F 5 HOH H 55 676 676 HOH HOH . 
F 5 HOH H 56 677 677 HOH HOH . 
F 5 HOH H 57 680 680 HOH HOH . 
F 5 HOH H 58 681 681 HOH HOH . 
F 5 HOH H 59 682 682 HOH HOH . 
F 5 HOH H 60 684 684 HOH HOH . 
F 5 HOH H 61 686 686 HOH HOH . 
F 5 HOH H 62 689 689 HOH HOH . 
F 5 HOH H 63 690 690 HOH HOH . 
F 5 HOH H 64 692 692 HOH HOH . 
F 5 HOH H 65 695 695 HOH HOH . 
F 5 HOH H 66 697 697 HOH HOH . 
F 5 HOH H 67 698 698 HOH HOH . 
F 5 HOH H 68 700 700 HOH HOH . 
F 5 HOH H 69 701 701 HOH HOH . 
F 5 HOH H 70 702 702 HOH HOH . 
F 5 HOH H 71 703 703 HOH HOH . 
F 5 HOH H 72 704 704 HOH HOH . 
F 5 HOH H 73 705 705 HOH HOH . 
F 5 HOH H 74 706 706 HOH HOH . 
F 5 HOH H 75 707 707 HOH HOH . 
F 5 HOH H 76 709 709 HOH HOH . 
F 5 HOH H 77 710 710 HOH HOH . 
F 5 HOH H 78 711 711 HOH HOH . 
F 5 HOH H 79 712 712 HOH HOH . 
F 5 HOH H 80 713 713 HOH HOH . 
G 5 HOH P 1 626 626 HOH HOH . 
G 5 HOH P 2 634 634 HOH HOH . 
G 5 HOH P 3 660 660 HOH HOH . 
G 5 HOH P 4 662 662 HOH HOH . 
G 5 HOH P 5 672 672 HOH HOH . 
G 5 HOH P 6 678 678 HOH HOH . 
G 5 HOH P 7 679 679 HOH HOH . 
G 5 HOH P 8 688 688 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C 0E7 . . . D 4 14.538 38.08 6.229 1 20.95 ? C 0E7 1 H 1 
HETATM 2 O O 0E7 . . . D 4 13.582 38.871 6.068 1 20.51 ? O 0E7 1 H 1 
HETATM 3 C CA 0E7 . . . D 4 15.306 38.006 7.555 1 18.05 ? CA 0E7 1 H 1 
HETATM 4 C CB 0E7 . . . D 4 14.46 37.985 8.812 1 16.58 ? CB 0E7 1 H 1 
HETATM 5 C CD 0E7 . . . D 4 13.569 36.784 8.963 1 12.88 ? CD 0E7 1 H 1 
HETATM 6 N NE 0E7 . . . D 4 12.377 36.962 8.15 1 6.49 ? NE 0E7 1 H 1 
HETATM 7 C CZ 0E7 . . . D 4 11.139 36.978 8.592 1 8.17 ? CZ 0E7 1 H 1 
HETATM 8 N NH1 0E7 . . . D 4 10.84 36.807 9.879 1 10.71 ? NH1 0E7 1 H 1 
HETATM 9 N NH2 0E7 . . . D 4 10.195 37.223 7.724 1 2 ? NH2 0E7 1 H 1 
HETATM 10 N N 0E7 . . . D 4 14.938 37.184 5.326 1 19.05 ? N 0E7 1 H 1 
HETATM 11 C CA1 0E7 . . . D 4 14.371 36.967 3.988 1 17.39 ? CA1 0E7 1 H 1 
HETATM 12 C C1 0E7 . . . D 4 12.87 36.594 4.029 1 19.8 ? C1 0E7 1 H 1 
HETATM 13 O O1 0E7 . . . D 4 12.391 36.007 5.017 1 24.54 ? O1 0E7 1 H 1 
HETATM 14 C CB1 0E7 . . . D 4 15.158 35.803 3.362 1 17.51 ? CB1 0E7 1 H 1 
HETATM 15 C CG 0E7 . . . D 4 14.933 35.622 1.899 1 21.65 ? CG 0E7 1 H 1 
HETATM 16 C CD1 0E7 . . . D 4 15.684 36.379 0.968 1 23.14 ? CD1 0E7 1 H 1 
HETATM 17 C CD2 0E7 . . . D 4 13.933 34.724 1.42 1 24.14 ? CD2 0E7 1 H 1 
HETATM 18 C CE1 0E7 . . . D 4 15.442 36.255 -0.428 1 21 ? CE1 0E7 1 H 1 
HETATM 19 C CE2 0E7 . . . D 4 13.677 34.593 0.023 1 20.76 ? CE2 0E7 1 H 1 
HETATM 20 C CZ1 0E7 . . . D 4 14.429 35.363 -0.898 1 18.11 ? CZ1 0E7 1 H 1 
HETATM 21 N N1 0E7 . . . D 4 12.118 36.968 2.991 1 20.56 ? N1 0E7 1 H 1 
HETATM 22 C CA2 0E7 . . . D 4 10.692 36.612 2.915 1 22.85 ? CA2 0E7 1 H 1 
HETATM 23 C CB2 0E7 . . . D 4 9.718 37.838 3.02 1 24.42 ? CB2 0E7 1 H 1 
HETATM 24 C CG2 0E7 . . . D 4 9.917 38.615 4.339 1 26.07 ? CG2 0E7 1 H 1 
HETATM 25 O OG1 0E7 . . . D 4 8.355 37.379 2.984 1 25.53 ? OG1 0E7 1 H 1 
HETATM 26 C C2 0E7 . . . D 4 10.376 35.757 1.682 1 25.07 ? C2 0E7 1 H 1 
HETATM 27 O O2 0E7 . . . D 4 10.936 35.963 0.612 1 30.43 ? O2 0E7 1 H 1 
HETATM 28 N N2 0E7 . . . D 4 9.529 34.75 1.889 1 24.07 ? N2 0E7 1 H 1 
HETATM 29 C CA3 0E7 . . . D 4 9.07 33.823 0.865 1 21.32 ? CA3 0E7 1 H 1 
HETATM 30 C C3 0E7 . . . D 4 7.575 34.058 0.704 1 25.65 ? C3 0E7 1 H 1 
HETATM 31 C CB3 0E7 . . . D 4 9.266 32.376 1.319 1 20.26 ? CB3 0E7 1 H 1 
HETATM 32 C CG1 0E7 . . . D 4 10.641 31.817 1.073 1 18.64 ? CG1 0E7 1 H 1 
HETATM 33 C CD11 0E7 . . . D 4 11.053 31.453 -0.247 1 16.35 ? CD11 0E7 1 H 1 
HETATM 34 C CD21 0E7 . . . D 4 11.525 31.594 2.165 1 15.31 ? CD21 0E7 1 H 1 
HETATM 35 C CE11 0E7 . . . D 4 12.344 30.861 -0.477 1 13.17 ? CE11 0E7 1 H 1 
HETATM 36 C CE21 0E7 . . . D 4 12.818 31.005 1.964 1 12.85 ? CE21 0E7 1 H 1 
HETATM 37 C CZ2 0E7 . . . D 4 13.23 30.637 0.635 1 16.67 ? CZ2 0E7 1 H 1 
HETATM 38 O O3 0E7 . . . D 4 7.038 33.954 -0.408 1 29.37 ? O3 0E7 1 H 1 
HETATM 39 C CM 0E7 . . . D 4 5.317 34.464 1.688 1 32.16 ? CM 0E7 1 H 1 
HETATM 40 O OXT 0E7 . . . D 4 6.683 34.32 1.836 1 28.39 ? OXT 0E7 1 H 1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           40 
#