data_1HDY
#
_model_server_result.job_id            xmyGi1MeINhvB0-ZFzFSeQ 
_model_server_result.datetime_utc      '2024-11-22 22:07:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hdy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":376}' 
#
_entry.id    1HDY 
#
_exptl.entry_id    1HDY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         92.65 
_cell.angle_beta          103.21 
_cell.angle_gamma         68.77 
_cell.entry_id            1HDY 
_cell.length_a            54.36 
_cell.length_b            44.89 
_cell.length_c            93.85 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HDY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 E C4N NAD . A NAD 377 1_555 F N2 PYZ . A PYZ 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc1 A SG CYS 46 A CYS 46 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc2 A NE2 HIS 67 A HIS 67 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc3 A SG CYS 97 A CYS 97 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc4 A SG CYS 100 A CYS 100 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc5 A SG CYS 103 A CYS 103 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc6 A SG CYS 111 A CYS 111 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc7 A SG CYS 174 A CYS 174 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc8 D ZN ZN . A ZN 376 1_555 F N1 PYZ . A PYZ 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc9 B SG CYS 46 B CYS 46 1_555 H ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc10 B NE2 HIS 67 B HIS 67 1_555 H ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc11 B SG CYS 97 B CYS 97 1_555 G ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc12 B SG CYS 100 B CYS 100 1_555 G ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc13 B SG CYS 103 B CYS 103 1_555 G ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc14 B SG CYS 111 B CYS 111 1_555 G ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc15 B SG CYS 174 B CYS 174 1_555 H ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? 
metalc ? metalc16 H ZN ZN . B ZN 376 1_555 K N1 PYZ . B PYZ 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1HDY 
_atom_sites.fract_transf_matrix[1][1]    0.018396 
_atom_sites.fract_transf_matrix[1][2]    -0.007146 
_atom_sites.fract_transf_matrix[1][3]    0.004609 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023899 
_atom_sites.fract_transf_matrix[2][3]    -0.000962 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010954 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 375 375 ZN ZN . 
D 2 ZN A 1 376 376 ZN ZN . 
E 3 NAD A 1 377 377 NAD NAD . 
F 4 PYZ A 1 378 378 PYZ PYZ . 
G 2 ZN B 1 375 375 ZN ZN . 
H 2 ZN B 1 376 376 ZN ZN . 
I 5 CL B 1 601 601 CL CL . 
J 3 NAD B 1 377 377 NAD NAD . 
K 4 PYZ B 1 378 378 PYZ PYZ . 
L 6 HOH A 1 379 401 HOH HOH . 
L 6 HOH A 2 380 402 HOH HOH . 
L 6 HOH A 3 381 403 HOH HOH . 
L 6 HOH A 4 382 404 HOH HOH . 
L 6 HOH A 5 383 405 HOH HOH . 
L 6 HOH A 6 384 406 HOH HOH . 
L 6 HOH A 7 385 407 HOH HOH . 
L 6 HOH A 8 386 408 HOH HOH . 
L 6 HOH A 9 387 409 HOH HOH . 
L 6 HOH A 10 388 410 HOH HOH . 
L 6 HOH A 11 389 412 HOH HOH . 
L 6 HOH A 12 390 414 HOH HOH . 
L 6 HOH A 13 391 416 HOH HOH . 
L 6 HOH A 14 392 417 HOH HOH . 
L 6 HOH A 15 393 418 HOH HOH . 
L 6 HOH A 16 394 419 HOH HOH . 
L 6 HOH A 17 395 420 HOH HOH . 
L 6 HOH A 18 396 423 HOH HOH . 
L 6 HOH A 19 397 424 HOH HOH . 
L 6 HOH A 20 398 425 HOH HOH . 
L 6 HOH A 21 399 426 HOH HOH . 
L 6 HOH A 22 400 450 HOH HOH . 
L 6 HOH A 23 401 451 HOH HOH . 
L 6 HOH A 24 402 452 HOH HOH . 
L 6 HOH A 25 403 453 HOH HOH . 
L 6 HOH A 26 404 454 HOH HOH . 
L 6 HOH A 27 405 455 HOH HOH . 
L 6 HOH A 28 406 456 HOH HOH . 
L 6 HOH A 29 407 457 HOH HOH . 
L 6 HOH A 30 408 458 HOH HOH . 
L 6 HOH A 31 409 459 HOH HOH . 
L 6 HOH A 32 410 505 HOH HOH . 
L 6 HOH A 33 411 518 HOH HOH . 
L 6 HOH A 34 412 550 HOH HOH . 
L 6 HOH A 35 413 551 HOH HOH . 
L 6 HOH A 36 414 552 HOH HOH . 
L 6 HOH A 37 415 553 HOH HOH . 
L 6 HOH A 38 416 554 HOH HOH . 
L 6 HOH A 39 417 555 HOH HOH . 
L 6 HOH A 40 418 556 HOH HOH . 
L 6 HOH A 41 419 557 HOH HOH . 
L 6 HOH A 42 420 558 HOH HOH . 
L 6 HOH A 43 421 559 HOH HOH . 
L 6 HOH A 44 422 560 HOH HOH . 
L 6 HOH A 45 423 561 HOH HOH . 
L 6 HOH A 46 424 562 HOH HOH . 
L 6 HOH A 47 425 563 HOH HOH . 
L 6 HOH A 48 426 564 HOH HOH . 
L 6 HOH A 49 427 565 HOH HOH . 
L 6 HOH A 50 428 566 HOH HOH . 
L 6 HOH A 51 429 567 HOH HOH . 
L 6 HOH A 52 430 568 HOH HOH . 
L 6 HOH A 53 431 569 HOH HOH . 
L 6 HOH A 54 432 570 HOH HOH . 
L 6 HOH A 55 433 571 HOH HOH . 
L 6 HOH A 56 434 572 HOH HOH . 
L 6 HOH A 57 435 573 HOH HOH . 
L 6 HOH A 58 436 574 HOH HOH . 
L 6 HOH A 59 437 602 HOH HOH . 
M 6 HOH B 1 602 534 HOH HOH . 
M 6 HOH B 2 603 401 HOH HOH . 
M 6 HOH B 3 604 403 HOH HOH . 
M 6 HOH B 4 605 404 HOH HOH . 
M 6 HOH B 5 606 405 HOH HOH . 
M 6 HOH B 6 607 406 HOH HOH . 
M 6 HOH B 7 608 407 HOH HOH . 
M 6 HOH B 8 609 412 HOH HOH . 
M 6 HOH B 9 610 416 HOH HOH . 
M 6 HOH B 10 611 417 HOH HOH . 
M 6 HOH B 11 612 418 HOH HOH . 
M 6 HOH B 12 613 420 HOH HOH . 
M 6 HOH B 13 614 422 HOH HOH . 
M 6 HOH B 14 615 423 HOH HOH . 
M 6 HOH B 15 616 424 HOH HOH . 
M 6 HOH B 16 617 450 HOH HOH . 
M 6 HOH B 17 618 451 HOH HOH . 
M 6 HOH B 18 619 452 HOH HOH . 
M 6 HOH B 19 620 453 HOH HOH . 
M 6 HOH B 20 621 454 HOH HOH . 
M 6 HOH B 21 622 455 HOH HOH . 
M 6 HOH B 22 623 456 HOH HOH . 
M 6 HOH B 23 624 457 HOH HOH . 
M 6 HOH B 24 625 458 HOH HOH . 
M 6 HOH B 25 626 459 HOH HOH . 
M 6 HOH B 26 627 604 HOH HOH . 
M 6 HOH B 27 628 606 HOH HOH . 
M 6 HOH B 28 629 611 HOH HOH . 
M 6 HOH B 29 630 615 HOH HOH . 
M 6 HOH B 30 631 616 HOH HOH . 
M 6 HOH B 31 632 617 HOH HOH . 
M 6 HOH B 32 633 621 HOH HOH . 
M 6 HOH B 33 634 650 HOH HOH . 
M 6 HOH B 34 635 651 HOH HOH . 
M 6 HOH B 35 636 652 HOH HOH . 
M 6 HOH B 36 637 653 HOH HOH . 
M 6 HOH B 37 638 654 HOH HOH . 
M 6 HOH B 38 639 655 HOH HOH . 
M 6 HOH B 39 640 656 HOH HOH . 
M 6 HOH B 40 641 657 HOH HOH . 
M 6 HOH B 41 642 658 HOH HOH . 
M 6 HOH B 42 643 659 HOH HOH . 
M 6 HOH B 43 644 660 HOH HOH . 
M 6 HOH B 44 645 661 HOH HOH . 
M 6 HOH B 45 646 662 HOH HOH . 
M 6 HOH B 46 647 663 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               4.199 
_atom_site.Cartn_y               -2.122 
_atom_site.Cartn_z               -68.533 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        34.1 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           376 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#