data_1HDZ # _model_server_result.job_id dspWglxO6gcTxxRXqDvfGQ _model_server_result.datetime_utc '2024-11-23 02:48:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hdz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":376}' # _entry.id 1HDZ # _exptl.entry_id 1HDZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 92.36 _cell.angle_beta 103.63 _cell.angle_gamma 68.84 _cell.entry_id 1HDZ _cell.length_a 53.56 _cell.length_b 44.26 _cell.length_c 93.01 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HDZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 46 A CYS 46 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 A NE2 HIS 67 A HIS 67 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc3 A SG CYS 97 A CYS 97 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc4 A SG CYS 100 A CYS 100 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc5 A SG CYS 103 A CYS 103 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc6 A SG CYS 111 A CYS 111 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc7 A SG CYS 174 A CYS 174 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc8 B SG CYS 46 B CYS 46 1_555 G ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc9 B NE2 HIS 67 B HIS 67 1_555 G ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc10 B SG CYS 97 B CYS 97 1_555 F ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc11 B SG CYS 100 B CYS 100 1_555 F ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc12 B SG CYS 103 B CYS 103 1_555 F ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc13 B SG CYS 111 B CYS 111 1_555 F ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc14 B SG CYS 174 B CYS 174 1_555 G ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1HDZ _atom_sites.fract_transf_matrix[1][1] 0.018671 _atom_sites.fract_transf_matrix[1][2] -0.007227 _atom_sites.fract_transf_matrix[1][3] 0.004883 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024227 _atom_sites.fract_transf_matrix[2][3] -0.001175 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 375 375 ZN ZN . D 2 ZN A 1 376 376 ZN ZN . E 3 NAD A 1 377 377 NAD NAD . F 2 ZN B 1 375 375 ZN ZN . G 2 ZN B 1 376 376 ZN ZN . H 4 CL B 1 601 601 CL CL . I 3 NAD B 1 377 377 NAD NAD . J 5 HOH A 1 378 401 HOH HOH . J 5 HOH A 2 379 402 HOH HOH . J 5 HOH A 3 380 403 HOH HOH . J 5 HOH A 4 381 404 HOH HOH . J 5 HOH A 5 382 405 HOH HOH . J 5 HOH A 6 383 406 HOH HOH . J 5 HOH A 7 384 407 HOH HOH . J 5 HOH A 8 385 408 HOH HOH . J 5 HOH A 9 386 409 HOH HOH . J 5 HOH A 10 387 410 HOH HOH . J 5 HOH A 11 388 412 HOH HOH . J 5 HOH A 12 389 414 HOH HOH . J 5 HOH A 13 390 416 HOH HOH . J 5 HOH A 14 391 417 HOH HOH . J 5 HOH A 15 392 418 HOH HOH . J 5 HOH A 16 393 419 HOH HOH . J 5 HOH A 17 394 420 HOH HOH . J 5 HOH A 18 395 423 HOH HOH . J 5 HOH A 19 396 424 HOH HOH . J 5 HOH A 20 397 425 HOH HOH . J 5 HOH A 21 398 426 HOH HOH . J 5 HOH A 22 399 471 HOH HOH . J 5 HOH A 23 400 472 HOH HOH . J 5 HOH A 24 401 473 HOH HOH . J 5 HOH A 25 402 474 HOH HOH . J 5 HOH A 26 403 475 HOH HOH . J 5 HOH A 27 404 503 HOH HOH . J 5 HOH A 28 405 507 HOH HOH . J 5 HOH A 29 406 513 HOH HOH . J 5 HOH A 30 407 521 HOH HOH . J 5 HOH A 31 408 523 HOH HOH . J 5 HOH A 32 409 525 HOH HOH . J 5 HOH A 33 410 528 HOH HOH . J 5 HOH A 34 411 580 HOH HOH . J 5 HOH A 35 412 581 HOH HOH . J 5 HOH A 36 413 582 HOH HOH . J 5 HOH A 37 414 583 HOH HOH . J 5 HOH A 38 415 584 HOH HOH . J 5 HOH A 39 416 585 HOH HOH . J 5 HOH A 40 417 586 HOH HOH . J 5 HOH A 41 418 587 HOH HOH . J 5 HOH A 42 419 588 HOH HOH . J 5 HOH A 43 420 589 HOH HOH . J 5 HOH A 44 421 413 HOH HOH . J 5 HOH A 45 422 680 HOH HOH . K 5 HOH B 1 602 413 HOH HOH . K 5 HOH B 2 603 401 HOH HOH . K 5 HOH B 3 604 403 HOH HOH . K 5 HOH B 4 605 404 HOH HOH . K 5 HOH B 5 606 405 HOH HOH . K 5 HOH B 6 607 406 HOH HOH . K 5 HOH B 7 608 407 HOH HOH . K 5 HOH B 8 609 408 HOH HOH . K 5 HOH B 9 610 410 HOH HOH . K 5 HOH B 10 611 412 HOH HOH . K 5 HOH B 11 612 414 HOH HOH . K 5 HOH B 12 613 416 HOH HOH . K 5 HOH B 13 614 417 HOH HOH . K 5 HOH B 14 615 418 HOH HOH . K 5 HOH B 15 616 419 HOH HOH . K 5 HOH B 16 617 420 HOH HOH . K 5 HOH B 17 618 421 HOH HOH . K 5 HOH B 18 619 423 HOH HOH . K 5 HOH B 19 620 424 HOH HOH . K 5 HOH B 20 621 426 HOH HOH . K 5 HOH B 21 622 471 HOH HOH . K 5 HOH B 22 623 472 HOH HOH . K 5 HOH B 23 624 473 HOH HOH . K 5 HOH B 24 625 474 HOH HOH . K 5 HOH B 25 626 475 HOH HOH . K 5 HOH B 26 627 617 HOH HOH . K 5 HOH B 27 628 624 HOH HOH . K 5 HOH B 28 629 681 HOH HOH . K 5 HOH B 29 630 682 HOH HOH . K 5 HOH B 30 631 683 HOH HOH . K 5 HOH B 31 632 684 HOH HOH . K 5 HOH B 32 633 685 HOH HOH . K 5 HOH B 33 634 686 HOH HOH . K 5 HOH B 34 635 687 HOH HOH . K 5 HOH B 35 636 688 HOH HOH . K 5 HOH B 36 637 689 HOH HOH . K 5 HOH B 37 638 690 HOH HOH . K 5 HOH B 38 639 691 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 0.265 _atom_site.Cartn_y 10.258 _atom_site.Cartn_z -25.347 _atom_site.occupancy 0.75 _atom_site.B_iso_or_equiv 26.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 376 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #