data_1HDZ # _model_server_result.job_id Mk908t4XO46asbr37GVqDw _model_server_result.datetime_utc '2024-11-26 18:08:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hdz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":377}' # _entry.id 1HDZ # _exptl.entry_id 1HDZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 92.36 _cell.angle_beta 103.63 _cell.angle_gamma 68.84 _cell.entry_id 1HDZ _cell.length_a 53.56 _cell.length_b 44.26 _cell.length_c 93.01 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HDZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 46 A CYS 46 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 A NE2 HIS 67 A HIS 67 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc3 A SG CYS 97 A CYS 97 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc4 A SG CYS 100 A CYS 100 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc5 A SG CYS 103 A CYS 103 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc6 A SG CYS 111 A CYS 111 1_555 C ZN ZN . A ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc7 A SG CYS 174 A CYS 174 1_555 D ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc8 B SG CYS 46 B CYS 46 1_555 G ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc9 B NE2 HIS 67 B HIS 67 1_555 G ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc10 B SG CYS 97 B CYS 97 1_555 F ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc11 B SG CYS 100 B CYS 100 1_555 F ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc12 B SG CYS 103 B CYS 103 1_555 F ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc13 B SG CYS 111 B CYS 111 1_555 F ZN ZN . B ZN 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc14 B SG CYS 174 B CYS 174 1_555 G ZN ZN . B ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1HDZ _atom_sites.fract_transf_matrix[1][1] 0.018671 _atom_sites.fract_transf_matrix[1][2] -0.007227 _atom_sites.fract_transf_matrix[1][3] 0.004883 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024227 _atom_sites.fract_transf_matrix[2][3] -0.001175 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 375 375 ZN ZN . D 2 ZN A 1 376 376 ZN ZN . E 3 NAD A 1 377 377 NAD NAD . F 2 ZN B 1 375 375 ZN ZN . G 2 ZN B 1 376 376 ZN ZN . H 4 CL B 1 601 601 CL CL . I 3 NAD B 1 377 377 NAD NAD . J 5 HOH A 1 378 401 HOH HOH . J 5 HOH A 2 379 402 HOH HOH . J 5 HOH A 3 380 403 HOH HOH . J 5 HOH A 4 381 404 HOH HOH . J 5 HOH A 5 382 405 HOH HOH . J 5 HOH A 6 383 406 HOH HOH . J 5 HOH A 7 384 407 HOH HOH . J 5 HOH A 8 385 408 HOH HOH . J 5 HOH A 9 386 409 HOH HOH . J 5 HOH A 10 387 410 HOH HOH . J 5 HOH A 11 388 412 HOH HOH . J 5 HOH A 12 389 414 HOH HOH . J 5 HOH A 13 390 416 HOH HOH . J 5 HOH A 14 391 417 HOH HOH . J 5 HOH A 15 392 418 HOH HOH . J 5 HOH A 16 393 419 HOH HOH . J 5 HOH A 17 394 420 HOH HOH . J 5 HOH A 18 395 423 HOH HOH . J 5 HOH A 19 396 424 HOH HOH . J 5 HOH A 20 397 425 HOH HOH . J 5 HOH A 21 398 426 HOH HOH . J 5 HOH A 22 399 471 HOH HOH . J 5 HOH A 23 400 472 HOH HOH . J 5 HOH A 24 401 473 HOH HOH . J 5 HOH A 25 402 474 HOH HOH . J 5 HOH A 26 403 475 HOH HOH . J 5 HOH A 27 404 503 HOH HOH . J 5 HOH A 28 405 507 HOH HOH . J 5 HOH A 29 406 513 HOH HOH . J 5 HOH A 30 407 521 HOH HOH . J 5 HOH A 31 408 523 HOH HOH . J 5 HOH A 32 409 525 HOH HOH . J 5 HOH A 33 410 528 HOH HOH . J 5 HOH A 34 411 580 HOH HOH . J 5 HOH A 35 412 581 HOH HOH . J 5 HOH A 36 413 582 HOH HOH . J 5 HOH A 37 414 583 HOH HOH . J 5 HOH A 38 415 584 HOH HOH . J 5 HOH A 39 416 585 HOH HOH . J 5 HOH A 40 417 586 HOH HOH . J 5 HOH A 41 418 587 HOH HOH . J 5 HOH A 42 419 588 HOH HOH . J 5 HOH A 43 420 589 HOH HOH . J 5 HOH A 44 421 413 HOH HOH . J 5 HOH A 45 422 680 HOH HOH . K 5 HOH B 1 602 413 HOH HOH . K 5 HOH B 2 603 401 HOH HOH . K 5 HOH B 3 604 403 HOH HOH . K 5 HOH B 4 605 404 HOH HOH . K 5 HOH B 5 606 405 HOH HOH . K 5 HOH B 6 607 406 HOH HOH . K 5 HOH B 7 608 407 HOH HOH . K 5 HOH B 8 609 408 HOH HOH . K 5 HOH B 9 610 410 HOH HOH . K 5 HOH B 10 611 412 HOH HOH . K 5 HOH B 11 612 414 HOH HOH . K 5 HOH B 12 613 416 HOH HOH . K 5 HOH B 13 614 417 HOH HOH . K 5 HOH B 14 615 418 HOH HOH . K 5 HOH B 15 616 419 HOH HOH . K 5 HOH B 16 617 420 HOH HOH . K 5 HOH B 17 618 421 HOH HOH . K 5 HOH B 18 619 423 HOH HOH . K 5 HOH B 19 620 424 HOH HOH . K 5 HOH B 20 621 426 HOH HOH . K 5 HOH B 21 622 471 HOH HOH . K 5 HOH B 22 623 472 HOH HOH . K 5 HOH B 23 624 473 HOH HOH . K 5 HOH B 24 625 474 HOH HOH . K 5 HOH B 25 626 475 HOH HOH . K 5 HOH B 26 627 617 HOH HOH . K 5 HOH B 27 628 624 HOH HOH . K 5 HOH B 28 629 681 HOH HOH . K 5 HOH B 29 630 682 HOH HOH . K 5 HOH B 30 631 683 HOH HOH . K 5 HOH B 31 632 684 HOH HOH . K 5 HOH B 32 633 685 HOH HOH . K 5 HOH B 33 634 686 HOH HOH . K 5 HOH B 34 635 687 HOH HOH . K 5 HOH B 35 636 688 HOH HOH . K 5 HOH B 36 637 689 HOH HOH . K 5 HOH B 37 638 690 HOH HOH . K 5 HOH B 38 639 691 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 3 -8.382 13.214 -27.882 1 22.35 ? PA NAD 377 A 1 HETATM 2 O O1A NAD . . . E 3 -9.44 12.364 -27.259 1 9.35 ? O1A NAD 377 A 1 HETATM 3 O O2A NAD . . . E 3 -8.349 14.474 -27.106 1 25.51 ? O2A NAD 377 A 1 HETATM 4 O O5B NAD . . . E 3 -8.836 13.505 -29.401 1 32.86 ? O5B NAD 377 A 1 HETATM 5 C C5B NAD . . . E 3 -9.797 12.661 -30.13 1 20.88 ? C5B NAD 377 A 1 HETATM 6 C C4B NAD . . . E 3 -10.63 13.604 -30.93 1 15.85 ? C4B NAD 377 A 1 HETATM 7 O O4B NAD . . . E 3 -11.129 12.91 -32.053 1 15.7 ? O4B NAD 377 A 1 HETATM 8 C C3B NAD . . . E 3 -11.814 14.103 -30.126 1 14.24 ? C3B NAD 377 A 1 HETATM 9 O O3B NAD . . . E 3 -11.91 15.49 -30.303 1 19.67 ? O3B NAD 377 A 1 HETATM 10 C C2B NAD . . . E 3 -12.98 13.478 -30.794 1 18.32 ? C2B NAD 377 A 1 HETATM 11 O O2B NAD . . . E 3 -14.04 14.434 -30.768 1 23.87 ? O2B NAD 377 A 1 HETATM 12 C C1B NAD . . . E 3 -12.458 13.297 -32.221 1 20.91 ? C1B NAD 377 A 1 HETATM 13 N N9A NAD . . . E 3 -13.201 12.245 -32.877 1 23.47 ? N9A NAD 377 A 1 HETATM 14 C C8A NAD . . . E 3 -13.776 11.2 -32.295 1 22.76 ? C8A NAD 377 A 1 HETATM 15 N N7A NAD . . . E 3 -14.477 10.444 -33.12 1 22.62 ? N7A NAD 377 A 1 HETATM 16 C C5A NAD . . . E 3 -14.327 11.057 -34.258 1 23.92 ? C5A NAD 377 A 1 HETATM 17 C C6A NAD . . . E 3 -14.913 10.749 -35.465 1 21.38 ? C6A NAD 377 A 1 HETATM 18 N N6A NAD . . . E 3 -15.646 9.622 -35.624 1 21.56 ? N6A NAD 377 A 1 HETATM 19 N N1A NAD . . . E 3 -14.678 11.584 -36.454 1 17.99 ? N1A NAD 377 A 1 HETATM 20 C C2A NAD . . . E 3 -13.896 12.678 -36.285 1 18 ? C2A NAD 377 A 1 HETATM 21 N N3A NAD . . . E 3 -13.312 12.99 -35.128 1 21.41 ? N3A NAD 377 A 1 HETATM 22 C C4A NAD . . . E 3 -13.551 12.154 -34.124 1 23.72 ? C4A NAD 377 A 1 HETATM 23 O O3 NAD . . . E 3 -7.022 12.448 -27.893 1 2 ? O3 NAD 377 A 1 HETATM 24 P PN NAD . . . E 3 -5.56 12.885 -28.149 1 15.63 ? PN NAD 377 A 1 HETATM 25 O O1N NAD . . . E 3 -4.776 12.867 -26.892 1 29.64 ? O1N NAD 377 A 1 HETATM 26 O O2N NAD . . . E 3 -5.291 14.178 -28.809 1 23.08 ? O2N NAD 377 A 1 HETATM 27 O O5D NAD . . . E 3 -4.893 11.757 -29.029 1 20.4 ? O5D NAD 377 A 1 HETATM 28 C C5D NAD . . . E 3 -5.716 11.062 -30.014 1 10.94 ? C5D NAD 377 A 1 HETATM 29 C C4D NAD . . . E 3 -4.973 9.898 -30.579 1 5.7 ? C4D NAD 377 A 1 HETATM 30 O O4D NAD . . . E 3 -3.549 10.086 -30.701 1 11.39 ? O4D NAD 377 A 1 HETATM 31 C C3D NAD . . . E 3 -5.197 8.807 -29.614 1 12.03 ? C3D NAD 377 A 1 HETATM 32 O O3D NAD . . . E 3 -5.588 7.724 -30.417 1 12.28 ? O3D NAD 377 A 1 HETATM 33 C C2D NAD . . . E 3 -3.808 8.602 -29.01 1 12.81 ? C2D NAD 377 A 1 HETATM 34 O O2D NAD . . . E 3 -3.818 7.219 -28.665 1 16.11 ? O2D NAD 377 A 1 HETATM 35 C C1D NAD . . . E 3 -2.905 8.925 -30.211 1 13.69 ? C1D NAD 377 A 1 HETATM 36 N N1N NAD . . . E 3 -1.522 9.289 -29.879 1 14.2 ? N1N NAD 377 A 1 HETATM 37 C C2N NAD . . . E 3 -0.584 8.754 -30.627 1 9.42 ? C2N NAD 377 A 1 HETATM 38 C C3N NAD . . . E 3 0.705 9.02 -30.408 1 17.12 ? C3N NAD 377 A 1 HETATM 39 C C7N NAD . . . E 3 1.648 8.469 -31.196 1 21.64 ? C7N NAD 377 A 1 HETATM 40 O O7N NAD . . . E 3 2.824 8.768 -30.97 1 17.3 ? O7N NAD 377 A 1 HETATM 41 N N7N NAD . . . E 3 1.375 8.06 -32.458 1 16.24 ? N7N NAD 377 A 1 HETATM 42 C C4N NAD . . . E 3 1.083 9.853 -29.407 1 15.15 ? C4N NAD 377 A 1 HETATM 43 C C5N NAD . . . E 3 0.157 10.415 -28.624 1 16.08 ? C5N NAD 377 A 1 HETATM 44 C C6N NAD . . . E 3 -1.193 10.109 -28.884 1 16.04 ? C6N NAD 377 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #