data_1HFA # _model_server_result.job_id AIGfJaW1Sa-q20GW56F4tA _model_server_result.datetime_utc '2024-11-29 13:34:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hfa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1HFA # _exptl.entry_id 1HFA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 746.566 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HFA _cell.length_a 77.725 _cell.length_b 77.725 _cell.length_c 122.265 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HFA _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 77.725 77.725 61.1325 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H49 O19 P3' _chem_comp.formula_weight 746.566 _chem_comp.id PIO _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'dioctanoyl l-alpha-phosphatidyl-d-myo-inositol 4,5-diphosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PIO sing 260 n n C1 C2 PIO sing 261 n n C1 C6 PIO sing 262 n n C1 H1 PIO sing 263 n n O1 P1 PIO sing 264 n n P1 O11 PIO sing 265 n n O11 H11 PIO sing 266 n n P1 O12 PIO doub 267 n n P1 O13 PIO sing 268 n n C2 O2 PIO sing 269 n n C2 C3 PIO sing 270 n n C2 H2 PIO sing 271 n n O2 HO2 PIO sing 272 n n C3 O3 PIO sing 273 n n C3 C4 PIO sing 274 n n C3 H3 PIO sing 275 n n O3 HO3 PIO sing 276 n n C4 O4 PIO sing 277 n n C4 C5 PIO sing 278 n n C4 H4 PIO sing 279 n n O4 P4 PIO sing 280 n n P4 O41 PIO sing 281 n n O41 H41 PIO sing 282 n n P4 O42 PIO doub 283 n n P4 O43 PIO sing 284 n n O43 H43 PIO sing 285 n n C5 O5 PIO sing 286 n n C5 C6 PIO sing 287 n n C5 H5 PIO sing 288 n n O5 P5 PIO sing 289 n n P5 O51 PIO sing 290 n n O51 H51 PIO sing 291 n n P5 O52 PIO sing 292 n n O52 H52 PIO sing 293 n n P5 O53 PIO doub 294 n n C6 O6 PIO sing 295 n n C6 H6 PIO sing 296 n n O6 HO6 PIO sing 297 n n O13 C1C PIO sing 298 n n C1A O1A PIO doub 299 n n C1A C2A PIO sing 300 n n C1A O2C PIO sing 301 n n C1B O1B PIO doub 302 n n C1B C2B PIO sing 303 n n C1B O3C PIO sing 304 n n C1C C2C PIO sing 305 n n C1C H1C PIO sing 306 n n C1C H1CA PIO sing 307 n n C2A C3A PIO sing 308 n n C2A H2A PIO sing 309 n n C2A H2AA PIO sing 310 n n C2B C3B PIO sing 311 n n C2B H2B PIO sing 312 n n C2B H2BA PIO sing 313 n n C2C O2C PIO sing 314 n n C2C C3C PIO sing 315 n n C2C H2C PIO sing 316 n n C3A C4A PIO sing 317 n n C3A H3A PIO sing 318 n n C3A H3AA PIO sing 319 n n C3B C4B PIO sing 320 n n C3B H3B PIO sing 321 n n C3B H3BA PIO sing 322 n n C3C O3C PIO sing 323 n n C3C H3C PIO sing 324 n n C3C H3CA PIO sing 325 n n C4A C5A PIO sing 326 n n C4A H4A PIO sing 327 n n C4A H4AA PIO sing 328 n n C4B C5B PIO sing 329 n n C4B H4B PIO sing 330 n n C4B H4BA PIO sing 331 n n C5A C6A PIO sing 332 n n C5A H5A PIO sing 333 n n C5A H5AA PIO sing 334 n n C5B C6B PIO sing 335 n n C5B H5B PIO sing 336 n n C5B H5BA PIO sing 337 n n C6A C7A PIO sing 338 n n C6A H6A PIO sing 339 n n C6A H6AA PIO sing 340 n n C6B C7B PIO sing 341 n n C6B H6B PIO sing 342 n n C6B H6BA PIO sing 343 n n C7A C8A PIO sing 344 n n C7A H7A PIO sing 345 n n C7A H7AA PIO sing 346 n n C7B C8B PIO sing 347 n n C7B H7B PIO sing 348 n n C7B H7BA PIO sing 349 n n C8A H8A PIO sing 350 n n C8A H8AA PIO sing 351 n n C8A H8AB PIO sing 352 n n C8B H8B PIO sing 353 n n C8B H8BA PIO sing 354 n n C8B H8BB PIO sing 355 n n # _atom_sites.entry_id 1HFA _atom_sites.fract_transf_matrix[1][1] 0.012866 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012866 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PIO A 1 300 300 PIO PIO . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2081 2081 HOH HOH . C 3 HOH A 82 2082 2082 HOH HOH . C 3 HOH A 83 2083 2083 HOH HOH . C 3 HOH A 84 2084 2084 HOH HOH . C 3 HOH A 85 2085 2085 HOH HOH . C 3 HOH A 86 2086 2086 HOH HOH . C 3 HOH A 87 2087 2087 HOH HOH . C 3 HOH A 88 2088 2088 HOH HOH . C 3 HOH A 89 2089 2089 HOH HOH . C 3 HOH A 90 2090 2090 HOH HOH . C 3 HOH A 91 2091 2091 HOH HOH . C 3 HOH A 92 2092 2092 HOH HOH . C 3 HOH A 93 2093 2093 HOH HOH . C 3 HOH A 94 2094 2094 HOH HOH . C 3 HOH A 95 2095 2095 HOH HOH . C 3 HOH A 96 2096 2096 HOH HOH . C 3 HOH A 97 2097 2097 HOH HOH . C 3 HOH A 98 2098 2098 HOH HOH . C 3 HOH A 99 2099 2099 HOH HOH . C 3 HOH A 100 2100 2100 HOH HOH . C 3 HOH A 101 2101 2101 HOH HOH . C 3 HOH A 102 2102 2102 HOH HOH . C 3 HOH A 103 2103 2103 HOH HOH . C 3 HOH A 104 2104 2104 HOH HOH . C 3 HOH A 105 2105 2105 HOH HOH . C 3 HOH A 106 2106 2106 HOH HOH . C 3 HOH A 107 2107 2107 HOH HOH . C 3 HOH A 108 2108 2108 HOH HOH . C 3 HOH A 109 2109 2109 HOH HOH . C 3 HOH A 110 2110 2110 HOH HOH . C 3 HOH A 111 2111 2111 HOH HOH . C 3 HOH A 112 2112 2112 HOH HOH . C 3 HOH A 113 2113 2113 HOH HOH . C 3 HOH A 114 2114 2114 HOH HOH . C 3 HOH A 115 2115 2115 HOH HOH . C 3 HOH A 116 2116 2116 HOH HOH . C 3 HOH A 117 2117 2117 HOH HOH . C 3 HOH A 118 2118 2118 HOH HOH . C 3 HOH A 119 2119 2119 HOH HOH . C 3 HOH A 120 2120 2120 HOH HOH . C 3 HOH A 121 2121 2121 HOH HOH . C 3 HOH A 122 2122 2122 HOH HOH . C 3 HOH A 123 2123 2123 HOH HOH . C 3 HOH A 124 2124 2124 HOH HOH . C 3 HOH A 125 2125 2125 HOH HOH . C 3 HOH A 126 2126 2126 HOH HOH . C 3 HOH A 127 2127 2127 HOH HOH . C 3 HOH A 128 2128 2128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PIO . . . B 2 41.577 69.368 39.865 1 93.21 ? C1 PIO 300 A 1 HETATM 2 O O1 PIO . . . B 2 40.755 70.542 40.068 1 100.68 ? O1 PIO 300 A 1 HETATM 3 P P1 PIO . . . B 2 41.252 72.008 40.679 1 105.26 ? P1 PIO 300 A 1 HETATM 4 C C2 PIO . . . B 2 41.964 69.258 38.378 1 92.24 ? C2 PIO 300 A 1 HETATM 5 O O2 PIO . . . B 2 40.859 69.574 37.494 1 94.22 ? O2 PIO 300 A 1 HETATM 6 C C3 PIO . . . B 2 42.595 67.897 38.027 1 89.67 ? C3 PIO 300 A 1 HETATM 7 O O3 PIO . . . B 2 42.696 67.909 36.604 1 89.92 ? O3 PIO 300 A 1 HETATM 8 C C4 PIO . . . B 2 41.858 66.631 38.552 1 84.85 ? C4 PIO 300 A 1 HETATM 9 O O4 PIO . . . B 2 42.579 65.444 38.289 1 81.2 ? O4 PIO 300 A 1 HETATM 10 P P4 PIO . . . B 2 42.336 64.437 37.023 1 76.79 ? P4 PIO 300 A 1 HETATM 11 C C5 PIO . . . B 2 41.708 66.724 40.072 1 83.92 ? C5 PIO 300 A 1 HETATM 12 O O5 PIO . . . B 2 41.032 65.61 40.664 1 74.5 ? O5 PIO 300 A 1 HETATM 13 P P5 PIO . . . B 2 41.518 64.899 42.035 1 64.83 ? P5 PIO 300 A 1 HETATM 14 C C6 PIO . . . B 2 40.972 68.045 40.434 1 89.53 ? C6 PIO 300 A 1 HETATM 15 O O6 PIO . . . B 2 40.938 68.123 41.871 1 88.9 ? O6 PIO 300 A 1 HETATM 16 O O11 PIO . . . B 2 41.787 71.811 42.206 1 103.1 ? O11 PIO 300 A 1 HETATM 17 O O12 PIO . . . B 2 40.13 73.147 40.361 1 102.86 ? O12 PIO 300 A 1 HETATM 18 O O13 PIO . . . B 2 42.542 72.321 39.73 1 105.27 ? O13 PIO 300 A 1 HETATM 19 O O41 PIO . . . B 2 40.741 64.228 37.037 1 73.64 ? O41 PIO 300 A 1 HETATM 20 O O42 PIO . . . B 2 42.886 65.226 35.71 1 78.36 ? O42 PIO 300 A 1 HETATM 21 O O43 PIO . . . B 2 43.309 63.206 37.357 1 73.02 ? O43 PIO 300 A 1 HETATM 22 O O51 PIO . . . B 2 40.513 63.684 42.037 1 68.41 ? O51 PIO 300 A 1 HETATM 23 O O52 PIO . . . B 2 41.185 65.97 43.192 1 65.73 ? O52 PIO 300 A 1 HETATM 24 O O53 PIO . . . B 2 43.073 64.495 41.909 1 66.04 ? O53 PIO 300 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #