data_1HFY # _model_server_result.job_id mY-TzFFsx3_h-MELv-VbQA _model_server_result.datetime_utc '2025-02-05 18:53:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hfy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":124}' # _entry.id 1HFY # _exptl.entry_id 1HFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.5 _cell.angle_gamma 90 _cell.entry_id 1HFY _cell.length_a 32.5 _cell.length_b 89.7 _cell.length_c 45.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 120 A CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 28 A CYS 28 1_555 A SG CYS 111 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 61 A CYS 61 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 73 A CYS 73 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 B SG CYS 6 B CYS 6 1_555 B SG CYS 120 B CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 28 B CYS 28 1_555 B SG CYS 111 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf7 B SG CYS 61 B CYS 61 1_555 B SG CYS 77 B CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 B SG CYS 73 B CYS 73 1_555 B SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A O LYS 79 A LYS 79 1_555 C CA CA . A CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 A OD1 ASP 82 A ASP 82 1_555 C CA CA . A CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc3 A O ASP 84 A ASP 84 1_555 C CA CA . A CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc4 A OD1 ASP 87 A ASP 87 1_555 C CA CA . A CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc5 A OD1 ASP 88 A ASP 88 1_555 C CA CA . A CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc6 B O LYS 79 B LYS 79 1_555 D CA CA . B CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc7 B OD1 ASP 82 B ASP 82 1_555 D CA CA . B CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc8 B O ASP 84 B ASP 84 1_555 D CA CA . B CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc9 B OD1 ASP 87 B ASP 87 1_555 D CA CA . B CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc10 B OD1 ASP 88 B ASP 88 1_555 D CA CA . B CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1HFY _atom_sites.fract_transf_matrix[1][1] 0.030769 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002422 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 124 124 CA CA . D 2 CA B 1 124 124 CA CA . E 3 HOH A 1 125 125 HOH HOH . E 3 HOH A 2 126 126 HOH HOH . E 3 HOH A 3 127 127 HOH HOH . E 3 HOH A 4 128 128 HOH HOH . E 3 HOH A 5 129 129 HOH HOH . E 3 HOH A 6 130 130 HOH HOH . E 3 HOH A 7 131 132 HOH HOH . E 3 HOH A 8 132 133 HOH HOH . E 3 HOH A 9 133 134 HOH HOH . E 3 HOH A 10 134 135 HOH HOH . E 3 HOH A 11 135 136 HOH HOH . E 3 HOH A 12 136 137 HOH HOH . E 3 HOH A 13 137 138 HOH HOH . E 3 HOH A 14 138 140 HOH HOH . E 3 HOH A 15 139 141 HOH HOH . E 3 HOH A 16 140 142 HOH HOH . E 3 HOH A 17 141 143 HOH HOH . E 3 HOH A 18 142 144 HOH HOH . E 3 HOH A 19 143 145 HOH HOH . E 3 HOH A 20 144 146 HOH HOH . E 3 HOH A 21 145 147 HOH HOH . E 3 HOH A 22 146 148 HOH HOH . E 3 HOH A 23 147 149 HOH HOH . E 3 HOH A 24 148 150 HOH HOH . E 3 HOH A 25 149 151 HOH HOH . E 3 HOH A 26 150 152 HOH HOH . E 3 HOH A 27 151 153 HOH HOH . E 3 HOH A 28 152 154 HOH HOH . E 3 HOH A 29 153 155 HOH HOH . E 3 HOH A 30 154 156 HOH HOH . E 3 HOH A 31 155 157 HOH HOH . E 3 HOH A 32 156 158 HOH HOH . E 3 HOH A 33 157 159 HOH HOH . E 3 HOH A 34 158 160 HOH HOH . F 3 HOH B 1 125 131 HOH HOH . F 3 HOH B 2 126 139 HOH HOH . F 3 HOH B 3 127 125 HOH HOH . F 3 HOH B 4 128 126 HOH HOH . F 3 HOH B 5 129 127 HOH HOH . F 3 HOH B 6 130 128 HOH HOH . F 3 HOH B 7 131 129 HOH HOH . F 3 HOH B 8 132 130 HOH HOH . F 3 HOH B 9 133 131 HOH HOH . F 3 HOH B 10 134 132 HOH HOH . F 3 HOH B 11 135 133 HOH HOH . F 3 HOH B 12 136 134 HOH HOH . F 3 HOH B 13 137 135 HOH HOH . F 3 HOH B 14 138 136 HOH HOH . F 3 HOH B 15 139 137 HOH HOH . F 3 HOH B 16 140 138 HOH HOH . F 3 HOH B 17 141 139 HOH HOH . F 3 HOH B 18 142 140 HOH HOH . F 3 HOH B 19 143 141 HOH HOH . F 3 HOH B 20 144 142 HOH HOH . F 3 HOH B 21 145 143 HOH HOH . F 3 HOH B 22 146 144 HOH HOH . F 3 HOH B 23 147 145 HOH HOH . F 3 HOH B 24 148 146 HOH HOH . F 3 HOH B 25 149 147 HOH HOH . F 3 HOH B 26 150 148 HOH HOH . F 3 HOH B 27 151 149 HOH HOH . F 3 HOH B 28 152 150 HOH HOH . F 3 HOH B 29 153 151 HOH HOH . F 3 HOH B 30 154 152 HOH HOH . F 3 HOH B 31 155 153 HOH HOH . F 3 HOH B 32 156 154 HOH HOH . F 3 HOH B 33 157 155 HOH HOH . F 3 HOH B 34 158 156 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.581 _atom_site.Cartn_y 26.785 _atom_site.Cartn_z 17.724 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 124 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 411 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 1 #