data_1HGC # _model_server_result.job_id vkAxo4RCGWwdYuWFnGqUfQ _model_server_result.datetime_utc '2024-11-22 11:02:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hgc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":142}' # _entry.id 1HGC # _exptl.entry_id 1HGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HGC _cell.length_a 95.78 _cell.length_b 97.78 _cell.length_c 65.49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HGC _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 H N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 E FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc2 E FE HEM . A HEM 142 1_555 F O1 OXY . A OXY 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 G FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc4 C NE2 HIS 87 C HIS 87 1_555 H FE HEM . C HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc5 H FE HEM . C HEM 142 1_555 I O1 OXY . C OXY 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc6 D NE2 HIS 92 D HIS 92 1_555 J FE HEM . D HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1HGC _atom_sites.fract_transf_matrix[1][1] 0.010441 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 142 1 HEM HEM . F 4 OXY A 1 150 1 OXY HEM . G 3 HEM B 1 147 1 HEM HEM . H 3 HEM C 1 142 1 HEM HEM . I 4 OXY C 1 150 1 OXY HEM . J 3 HEM D 1 147 1 HEM HEM . K 5 HOH A 1 151 1 HOH HOH . K 5 HOH A 2 152 3 HOH HOH . K 5 HOH A 3 153 5 HOH HOH . K 5 HOH A 4 154 6 HOH HOH . K 5 HOH A 5 155 8 HOH HOH . K 5 HOH A 6 156 9 HOH HOH . K 5 HOH A 7 157 10 HOH HOH . K 5 HOH A 8 158 12 HOH HOH . K 5 HOH A 9 159 46 HOH HOH . K 5 HOH A 10 160 53 HOH HOH . K 5 HOH A 11 161 54 HOH HOH . K 5 HOH A 12 162 55 HOH HOH . K 5 HOH A 13 163 56 HOH HOH . K 5 HOH A 14 164 77 HOH HOH . K 5 HOH A 15 165 79 HOH HOH . K 5 HOH A 16 166 85 HOH HOH . L 5 HOH B 1 148 28 HOH HOH . L 5 HOH B 2 149 29 HOH HOH . L 5 HOH B 3 150 30 HOH HOH . L 5 HOH B 4 151 32 HOH HOH . L 5 HOH B 5 152 34 HOH HOH . L 5 HOH B 6 153 36 HOH HOH . L 5 HOH B 7 154 38 HOH HOH . L 5 HOH B 8 155 39 HOH HOH . L 5 HOH B 9 156 40 HOH HOH . L 5 HOH B 10 157 41 HOH HOH . L 5 HOH B 11 158 42 HOH HOH . L 5 HOH B 12 159 43 HOH HOH . L 5 HOH B 13 160 44 HOH HOH . L 5 HOH B 14 161 45 HOH HOH . L 5 HOH B 15 162 47 HOH HOH . L 5 HOH B 16 163 48 HOH HOH . L 5 HOH B 17 164 49 HOH HOH . L 5 HOH B 18 165 58 HOH HOH . L 5 HOH B 19 166 62 HOH HOH . L 5 HOH B 20 167 63 HOH HOH . L 5 HOH B 21 168 65 HOH HOH . L 5 HOH B 22 169 66 HOH HOH . L 5 HOH B 23 170 67 HOH HOH . L 5 HOH B 24 171 68 HOH HOH . L 5 HOH B 25 172 69 HOH HOH . L 5 HOH B 26 173 70 HOH HOH . L 5 HOH B 27 174 71 HOH HOH . L 5 HOH B 28 175 72 HOH HOH . L 5 HOH B 29 176 73 HOH HOH . L 5 HOH B 30 177 74 HOH HOH . L 5 HOH B 31 178 76 HOH HOH . L 5 HOH B 32 179 78 HOH HOH . L 5 HOH B 33 180 88 HOH HOH . M 5 HOH C 1 151 15 HOH HOH . M 5 HOH C 2 152 16 HOH HOH . M 5 HOH C 3 153 17 HOH HOH . M 5 HOH C 4 154 18 HOH HOH . M 5 HOH C 5 155 19 HOH HOH . M 5 HOH C 6 156 25 HOH HOH . M 5 HOH C 7 157 26 HOH HOH . M 5 HOH C 8 158 27 HOH HOH . M 5 HOH C 9 159 31 HOH HOH . M 5 HOH C 10 160 33 HOH HOH . M 5 HOH C 11 161 35 HOH HOH . M 5 HOH C 12 162 37 HOH HOH . M 5 HOH C 13 163 50 HOH HOH . M 5 HOH C 14 164 51 HOH HOH . M 5 HOH C 15 165 52 HOH HOH . M 5 HOH C 16 166 57 HOH HOH . M 5 HOH C 17 167 59 HOH HOH . M 5 HOH C 18 168 60 HOH HOH . M 5 HOH C 19 169 61 HOH HOH . M 5 HOH C 20 170 64 HOH HOH . M 5 HOH C 21 171 75 HOH HOH . N 5 HOH D 1 148 2 HOH HOH . N 5 HOH D 2 149 4 HOH HOH . N 5 HOH D 3 150 7 HOH HOH . N 5 HOH D 4 151 11 HOH HOH . N 5 HOH D 5 152 13 HOH HOH . N 5 HOH D 6 153 14 HOH HOH . N 5 HOH D 7 154 20 HOH HOH . N 5 HOH D 8 155 21 HOH HOH . N 5 HOH D 9 156 22 HOH HOH . N 5 HOH D 10 157 23 HOH HOH . N 5 HOH D 11 158 24 HOH HOH . N 5 HOH D 12 159 80 HOH HOH . N 5 HOH D 13 160 81 HOH HOH . N 5 HOH D 14 161 82 HOH HOH . N 5 HOH D 15 162 83 HOH HOH . N 5 HOH D 16 163 84 HOH HOH . N 5 HOH D 17 164 86 HOH HOH . N 5 HOH D 18 165 87 HOH HOH . N 5 HOH D 19 166 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . H 3 30.244 4.599 10.617 1 26.29 ? CHA HEM 142 C 1 HETATM 2 C CHB HEM . . . H 3 33.495 6.206 13.787 1 21.89 ? CHB HEM 142 C 1 HETATM 3 C CHC HEM . . . H 3 30.988 10.366 14.137 1 13.43 ? CHC HEM 142 C 1 HETATM 4 C CHD HEM . . . H 3 27.464 8.485 11.393 1 16.78 ? CHD HEM 142 C 1 HETATM 5 C C1A HEM . . . H 3 31.346 4.64 11.461 1 20 ? C1A HEM 142 C 1 HETATM 6 C C2A HEM . . . H 3 32.283 3.562 11.714 1 17.92 ? C2A HEM 142 C 1 HETATM 7 C C3A HEM . . . H 3 33.178 4.017 12.584 1 21.86 ? C3A HEM 142 C 1 HETATM 8 C C4A HEM . . . H 3 32.82 5.374 12.921 1 15.71 ? C4A HEM 142 C 1 HETATM 9 C CMA HEM . . . H 3 34.399 3.282 13.161 1 9.01 ? CMA HEM 142 C 1 HETATM 10 C CAA HEM . . . H 3 32.164 2.174 11.036 1 19.43 ? CAA HEM 142 C 1 HETATM 11 C CBA HEM . . . H 3 32.702 2.016 9.607 1 33.67 ? CBA HEM 142 C 1 HETATM 12 C CGA HEM . . . H 3 33.052 0.615 9.151 1 36.61 ? CGA HEM 142 C 1 HETATM 13 O O1A HEM . . . H 3 32.106 -0.179 8.885 1 35.32 ? O1A HEM 142 C 1 HETATM 14 O O2A HEM . . . H 3 34.286 0.324 9.066 1 35.41 ? O2A HEM 142 C 1 HETATM 15 C C1B HEM . . . H 3 33.085 7.486 14.159 1 25.9 ? C1B HEM 142 C 1 HETATM 16 C C2B HEM . . . H 3 33.766 8.326 15.124 1 17.4 ? C2B HEM 142 C 1 HETATM 17 C C3B HEM . . . H 3 33.094 9.477 15.215 1 16.53 ? C3B HEM 142 C 1 HETATM 18 C C4B HEM . . . H 3 31.953 9.387 14.313 1 15.44 ? C4B HEM 142 C 1 HETATM 19 C CMB HEM . . . H 3 35.061 7.849 15.812 1 12.84 ? CMB HEM 142 C 1 HETATM 20 C CAB HEM . . . H 3 33.359 10.748 16.061 1 13.31 ? CAB HEM 142 C 1 HETATM 21 C CBB HEM . . . H 3 33.915 10.608 17.264 1 16.87 ? CBB HEM 142 C 1 HETATM 22 C C1C HEM . . . H 3 29.783 10.181 13.478 1 16.24 ? C1C HEM 142 C 1 HETATM 23 C C2C HEM . . . H 3 28.626 11.031 13.586 1 14.74 ? C2C HEM 142 C 1 HETATM 24 C C3C HEM . . . H 3 27.653 10.502 12.848 1 15.54 ? C3C HEM 142 C 1 HETATM 25 C C4C HEM . . . H 3 28.176 9.311 12.229 1 12.23 ? C4C HEM 142 C 1 HETATM 26 C CMC HEM . . . H 3 28.616 12.318 14.449 1 14.19 ? CMC HEM 142 C 1 HETATM 27 C CAC HEM . . . H 3 26.216 10.994 12.564 1 19.97 ? CAC HEM 142 C 1 HETATM 28 C CBC HEM . . . H 3 25.444 11.561 13.494 1 22.73 ? CBC HEM 142 C 1 HETATM 29 C C1D HEM . . . H 3 27.926 7.272 10.924 1 22.23 ? C1D HEM 142 C 1 HETATM 30 C C2D HEM . . . H 3 27.171 6.363 10.094 1 10.15 ? C2D HEM 142 C 1 HETATM 31 C C3D HEM . . . H 3 27.928 5.29 9.869 1 17.16 ? C3D HEM 142 C 1 HETATM 32 C C4D HEM . . . H 3 29.182 5.48 10.566 1 25.99 ? C4D HEM 142 C 1 HETATM 33 C CMD HEM . . . H 3 25.748 6.687 9.586 1 10.59 ? CMD HEM 142 C 1 HETATM 34 C CAD HEM . . . H 3 27.646 4.028 9.033 1 18.38 ? CAD HEM 142 C 1 HETATM 35 C CBD HEM . . . H 3 26.753 3.001 9.718 1 21.21 ? CBD HEM 142 C 1 HETATM 36 C CGD HEM . . . H 3 26.506 1.734 8.962 1 29.45 ? CGD HEM 142 C 1 HETATM 37 O O1D HEM . . . H 3 26.231 0.759 9.691 1 29.38 ? O1D HEM 142 C 1 HETATM 38 O O2D HEM . . . H 3 26.593 1.732 7.707 1 32.42 ? O2D HEM 142 C 1 HETATM 39 N NA HEM . . . H 3 31.692 5.757 12.205 1 16.92 ? NA HEM 142 C 1 HETATM 40 N NB HEM . . . H 3 31.964 8.159 13.682 1 17.35 ? NB HEM 142 C 1 HETATM 41 N NC HEM . . . H 3 29.48 9.114 12.644 1 23.44 ? NC HEM 142 C 1 HETATM 42 N ND HEM . . . H 3 29.164 6.702 11.213 1 13.55 ? ND HEM 142 C 1 HETATM 43 FE FE HEM . . . H 3 30.675 7.488 12.275 1 21.14 ? FE HEM 142 C 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #