data_1HGX # _model_server_result.job_id piFK4xSKEHP6oET-sJarYw _model_server_result.datetime_utc '2024-11-24 01:45:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hgx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 1HGX # _exptl.entry_id 1HGX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.77 _cell.angle_gamma 90 _cell.entry_id 1HGX _cell.length_a 48.96 _cell.length_b 74.92 _cell.length_c 55.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HGX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 1HGX _atom_sites.fract_transf_matrix[1][1] 0.020425 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007746 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013348 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5GP A 1 600 600 5GP 5GP . D 3 SO4 B 1 700 700 SO4 SO4 . E 4 HOH A 1 400 400 HOH HOH . E 4 HOH A 2 402 402 HOH HOH . E 4 HOH A 3 404 404 HOH HOH . E 4 HOH A 4 406 406 HOH HOH . E 4 HOH A 5 408 408 HOH HOH . E 4 HOH A 6 409 409 HOH HOH . E 4 HOH A 7 410 410 HOH HOH . E 4 HOH A 8 411 411 HOH HOH . E 4 HOH A 9 412 412 HOH HOH . E 4 HOH A 10 413 413 HOH HOH . E 4 HOH A 11 414 414 HOH HOH . E 4 HOH A 12 415 415 HOH HOH . E 4 HOH A 13 416 416 HOH HOH . E 4 HOH A 14 417 417 HOH HOH . E 4 HOH A 15 418 418 HOH HOH . E 4 HOH A 16 422 422 HOH HOH . E 4 HOH A 17 423 423 HOH HOH . E 4 HOH A 18 424 424 HOH HOH . E 4 HOH A 19 427 427 HOH HOH . E 4 HOH A 20 428 428 HOH HOH . E 4 HOH A 21 429 429 HOH HOH . E 4 HOH A 22 431 431 HOH HOH . E 4 HOH A 23 433 433 HOH HOH . E 4 HOH A 24 434 434 HOH HOH . E 4 HOH A 25 436 436 HOH HOH . E 4 HOH A 26 437 437 HOH HOH . E 4 HOH A 27 442 442 HOH HOH . E 4 HOH A 28 443 443 HOH HOH . E 4 HOH A 29 447 447 HOH HOH . E 4 HOH A 30 449 449 HOH HOH . E 4 HOH A 31 453 453 HOH HOH . E 4 HOH A 32 454 454 HOH HOH . E 4 HOH A 33 456 456 HOH HOH . E 4 HOH A 34 457 457 HOH HOH . E 4 HOH A 35 458 458 HOH HOH . E 4 HOH A 36 460 460 HOH HOH . E 4 HOH A 37 461 461 HOH HOH . E 4 HOH A 38 462 462 HOH HOH . E 4 HOH A 39 463 463 HOH HOH . E 4 HOH A 40 464 464 HOH HOH . E 4 HOH A 41 465 465 HOH HOH . E 4 HOH A 42 466 466 HOH HOH . E 4 HOH A 43 467 467 HOH HOH . E 4 HOH A 44 475 475 HOH HOH . E 4 HOH A 45 477 477 HOH HOH . E 4 HOH A 46 478 478 HOH HOH . E 4 HOH A 47 479 479 HOH HOH . E 4 HOH A 48 480 480 HOH HOH . E 4 HOH A 49 481 481 HOH HOH . E 4 HOH A 50 482 482 HOH HOH . E 4 HOH A 51 498 498 HOH HOH . E 4 HOH A 52 499 499 HOH HOH . E 4 HOH A 53 500 500 HOH HOH . E 4 HOH A 54 501 501 HOH HOH . E 4 HOH A 55 502 502 HOH HOH . E 4 HOH A 56 503 503 HOH HOH . E 4 HOH A 57 504 504 HOH HOH . E 4 HOH A 58 505 505 HOH HOH . E 4 HOH A 59 506 506 HOH HOH . E 4 HOH A 60 507 507 HOH HOH . E 4 HOH A 61 508 508 HOH HOH . E 4 HOH A 62 509 509 HOH HOH . E 4 HOH A 63 510 510 HOH HOH . E 4 HOH A 64 511 511 HOH HOH . E 4 HOH A 65 519 519 HOH HOH . E 4 HOH A 66 520 520 HOH HOH . E 4 HOH A 67 521 521 HOH HOH . E 4 HOH A 68 522 522 HOH HOH . E 4 HOH A 69 523 523 HOH HOH . E 4 HOH A 70 524 524 HOH HOH . E 4 HOH A 71 525 525 HOH HOH . E 4 HOH A 72 535 535 HOH HOH . E 4 HOH A 73 536 536 HOH HOH . E 4 HOH A 74 537 537 HOH HOH . F 4 HOH B 1 401 401 HOH HOH . F 4 HOH B 2 403 403 HOH HOH . F 4 HOH B 3 405 405 HOH HOH . F 4 HOH B 4 407 407 HOH HOH . F 4 HOH B 5 419 419 HOH HOH . F 4 HOH B 6 420 420 HOH HOH . F 4 HOH B 7 421 421 HOH HOH . F 4 HOH B 8 425 425 HOH HOH . F 4 HOH B 9 426 426 HOH HOH . F 4 HOH B 10 430 430 HOH HOH . F 4 HOH B 11 432 432 HOH HOH . F 4 HOH B 12 435 435 HOH HOH . F 4 HOH B 13 438 438 HOH HOH . F 4 HOH B 14 439 439 HOH HOH . F 4 HOH B 15 440 440 HOH HOH . F 4 HOH B 16 441 441 HOH HOH . F 4 HOH B 17 444 444 HOH HOH . F 4 HOH B 18 445 445 HOH HOH . F 4 HOH B 19 446 446 HOH HOH . F 4 HOH B 20 448 448 HOH HOH . F 4 HOH B 21 450 450 HOH HOH . F 4 HOH B 22 451 451 HOH HOH . F 4 HOH B 23 452 452 HOH HOH . F 4 HOH B 24 455 455 HOH HOH . F 4 HOH B 25 468 468 HOH HOH . F 4 HOH B 26 469 469 HOH HOH . F 4 HOH B 27 470 470 HOH HOH . F 4 HOH B 28 471 471 HOH HOH . F 4 HOH B 29 472 472 HOH HOH . F 4 HOH B 30 473 473 HOH HOH . F 4 HOH B 31 474 474 HOH HOH . F 4 HOH B 32 483 483 HOH HOH . F 4 HOH B 33 484 484 HOH HOH . F 4 HOH B 34 485 485 HOH HOH . F 4 HOH B 35 486 486 HOH HOH . F 4 HOH B 36 487 487 HOH HOH . F 4 HOH B 37 488 488 HOH HOH . F 4 HOH B 38 489 489 HOH HOH . F 4 HOH B 39 490 490 HOH HOH . F 4 HOH B 40 492 492 HOH HOH . F 4 HOH B 41 493 493 HOH HOH . F 4 HOH B 42 494 494 HOH HOH . F 4 HOH B 43 495 495 HOH HOH . F 4 HOH B 44 496 496 HOH HOH . F 4 HOH B 45 497 497 HOH HOH . F 4 HOH B 46 512 512 HOH HOH . F 4 HOH B 47 513 513 HOH HOH . F 4 HOH B 48 514 514 HOH HOH . F 4 HOH B 49 516 516 HOH HOH . F 4 HOH B 50 517 517 HOH HOH . F 4 HOH B 51 518 518 HOH HOH . F 4 HOH B 52 526 526 HOH HOH . F 4 HOH B 53 527 527 HOH HOH . F 4 HOH B 54 529 529 HOH HOH . F 4 HOH B 55 530 530 HOH HOH . F 4 HOH B 56 531 531 HOH HOH . F 4 HOH B 57 532 532 HOH HOH . F 4 HOH B 58 533 533 HOH HOH . F 4 HOH B 59 534 534 HOH HOH . F 4 HOH B 60 538 538 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . C 2 -7.194 10.449 26.954 1 13.99 ? P 5GP 600 A 1 HETATM 2 O O1P 5GP . . . C 2 -8.162 9.348 26.758 1 15.37 ? O1P 5GP 600 A 1 HETATM 3 O O2P 5GP . . . C 2 -7.162 11.382 25.826 1 16.67 ? O2P 5GP 600 A 1 HETATM 4 O O3P 5GP . . . C 2 -7.366 11.079 28.276 1 16.13 ? O3P 5GP 600 A 1 HETATM 5 O O5' 5GP . . . C 2 -5.81 9.756 27.141 1 15.36 ? O5' 5GP 600 A 1 HETATM 6 C C5' 5GP . . . C 2 -5.36 8.604 26.441 1 16.91 ? C5' 5GP 600 A 1 HETATM 7 C C4' 5GP . . . C 2 -3.941 8.812 26.094 1 22.03 ? C4' 5GP 600 A 1 HETATM 8 O O4' 5GP . . . C 2 -3.077 8.877 27.241 1 22.33 ? O4' 5GP 600 A 1 HETATM 9 C C3' 5GP . . . C 2 -3.42 7.704 25.232 1 25.87 ? C3' 5GP 600 A 1 HETATM 10 O O3' 5GP . . . C 2 -2.359 8.287 24.483 1 32.08 ? O3' 5GP 600 A 1 HETATM 11 C C2' 5GP . . . C 2 -2.853 6.814 26.268 1 25.01 ? C2' 5GP 600 A 1 HETATM 12 O O2' 5GP . . . C 2 -1.852 5.985 25.698 1 29.54 ? O2' 5GP 600 A 1 HETATM 13 C C1' 5GP . . . C 2 -2.254 7.72 27.345 1 22.31 ? C1' 5GP 600 A 1 HETATM 14 N N9 5GP . . . C 2 -2.458 7.104 28.713 1 21.65 ? N9 5GP 600 A 1 HETATM 15 C C8 5GP . . . C 2 -3.624 7.14 29.463 1 21.07 ? C8 5GP 600 A 1 HETATM 16 N N7 5GP . . . C 2 -3.56 6.476 30.59 1 19.13 ? N7 5GP 600 A 1 HETATM 17 C C5 5GP . . . C 2 -2.274 5.93 30.612 1 18.56 ? C5 5GP 600 A 1 HETATM 18 C C6 5GP . . . C 2 -1.696 5.011 31.545 1 18.25 ? C6 5GP 600 A 1 HETATM 19 O O6 5GP . . . C 2 -2.165 4.64 32.62 1 16.34 ? O6 5GP 600 A 1 HETATM 20 N N1 5GP . . . C 2 -0.465 4.525 31.126 1 19.65 ? N1 5GP 600 A 1 HETATM 21 C C2 5GP . . . C 2 0.164 4.892 29.94 1 21.74 ? C2 5GP 600 A 1 HETATM 22 N N2 5GP . . . C 2 1.399 4.426 29.742 1 19.06 ? N2 5GP 600 A 1 HETATM 23 N N3 5GP . . . C 2 -0.359 5.788 29.067 1 21.32 ? N3 5GP 600 A 1 HETATM 24 C C4 5GP . . . C 2 -1.601 6.251 29.443 1 21.23 ? C4 5GP 600 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 24 #