data_1HHA # _model_server_result.job_id HHpHJy0_tVa1VfA1WOaoWw _model_server_result.datetime_utc '2024-11-09 23:24:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hha # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":8}' # _entry.id 1HHA # _exptl.entry_id 1HHA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 161.199 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 4-epi-vancosamine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1HHA _cell.length_a 64.364 _cell.length_b 64.364 _cell.length_c 84.128 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HHA _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J,K,O,P 1 1 C,D,G,H,L,M,N,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 L N N ? 3 M N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 RAM _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E BGC 1 E 1 BGC A 9 BGC 2 n E RAM 2 E 2 RAM A 10 RAM 2 n F BGC 1 F 1 BGC B 9 BGC 2 n F RAM 2 F 2 RAM B 10 RAM 2 n G BGC 1 G 1 BGC C 9 BGC 2 n G RAM 2 G 2 RAM C 10 RAM 2 n H BGC 1 H 1 BGC D 9 BGC 2 n H RAM 2 H 2 RAM D 10 RAM # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MLU 1 A MLU 1 1_555 A N OMZ 2 A OMZ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C OMZ 2 A OMZ 2 1_555 A N ASN 3 A ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale3 A OH OMZ 2 A OMZ 2 1_555 A C5 GHP 4 A GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale4 A C ASN 3 A ASN 3 1_555 A N GHP 4 A GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 A C GHP 4 A GHP 4 1_555 A N GHP 5 A GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale6 A C3 GHP 4 A GHP 4 1_555 A OH OMX 6 A OMX 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale7 A O4 GHP 4 A GHP 4 1_555 E C1 BGC . E BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale8 A C GHP 5 A GHP 5 1_555 A N OMX 6 A OMX 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 A C3 GHP 5 A GHP 5 1_555 A CG1 3FG 7 A 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? covale ? covale10 A C OMX 6 A OMX 6 1_555 A N 3FG 7 A 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? covale ? covale11 A OC OMX 6 A OMX 6 1_555 I C1 ERE . A ERE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale12 B C MLU 1 B MLU 1 1_555 B N OMZ 2 B OMZ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale13 B C OMZ 2 B OMZ 2 1_555 B N ASN 3 B ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale14 B OH OMZ 2 B OMZ 2 1_555 B C5 GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale15 B C ASN 3 B ASN 3 1_555 B N GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale16 B C GHP 4 B GHP 4 1_555 B N GHP 5 B GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale17 B C3 GHP 4 B GHP 4 1_555 B OH OMX 6 B OMX 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale18 B O4 GHP 4 B GHP 4 1_555 F C1 BGC . F BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale19 B C GHP 5 B GHP 5 1_555 B N OMX 6 B OMX 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale20 B C3 GHP 5 B GHP 5 1_555 B CG1 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? covale ? covale21 B C OMX 6 B OMX 6 1_555 B N 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale22 B OC OMX 6 B OMX 6 1_555 J C1 ERE . B ERE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale23 C C MLU 1 C MLU 1 1_555 C N OMZ 2 C OMZ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale24 C C OMZ 2 C OMZ 2 1_555 C N ASN 3 C ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale25 C OH OMZ 2 C OMZ 2 1_555 C C5 GHP 4 C GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale26 C C ASN 3 C ASN 3 1_555 C N GHP 4 C GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale27 C C GHP 4 C GHP 4 1_555 C N GHP 5 C GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale28 C C3 GHP 4 C GHP 4 1_555 C OH OMX 6 C OMX 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale29 C O4 GHP 4 C GHP 4 1_555 G C1 BGC . G BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale30 C C GHP 5 C GHP 5 1_555 C N OMX 6 C OMX 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale31 C C3 GHP 5 C GHP 5 1_555 C CG1 3FG 7 C 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.504 ? covale ? covale32 C C OMX 6 C OMX 6 1_555 C N 3FG 7 C 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale33 C OC OMX 6 C OMX 6 1_555 L C1 ERE . C ERE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale34 D C MLU 1 D MLU 1 1_555 D N OMZ 2 D OMZ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale35 D C OMZ 2 D OMZ 2 1_555 D N ASN 3 D ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale36 D OH OMZ 2 D OMZ 2 1_555 D C5 GHP 4 D GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale37 D C ASN 3 D ASN 3 1_555 D N GHP 4 D GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale38 D C GHP 4 D GHP 4 1_555 D N GHP 5 D GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale39 D C3 GHP 4 D GHP 4 1_555 D OH OMX 6 D OMX 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale40 D O4 GHP 4 D GHP 4 1_555 H C1 BGC . H BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale41 D C GHP 5 D GHP 5 1_555 D N OMX 6 D OMX 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale42 D C3 GHP 5 D GHP 5 1_555 D CG1 3FG 7 D 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.505 ? covale ? covale43 D C OMX 6 D OMX 6 1_555 D N 3FG 7 D 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale44 D OC OMX 6 D OMX 6 1_555 M C1 ERE . D ERE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale45 E O2 BGC . E BGC 1 1_555 E C1 RAM . E RAM 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale46 F O2 BGC . F BGC 1 1_555 F C1 RAM . F RAM 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? covale ? covale47 G O2 BGC . G BGC 1 1_555 G C1 RAM . G RAM 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale48 H O2 BGC . H BGC 1 1_555 H C1 RAM . H RAM 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? # _chem_comp.formula 'C7 H15 N O3' _chem_comp.formula_weight 161.199 _chem_comp.id ERE _chem_comp.mon_nstd_flag . _chem_comp.name 4-epi-vancosamine _chem_comp.type 'l-saccharide, alpha linking' _chem_comp.pdbx_synonyms 4-EPI-VANCOSAMINE # _atom_sites.entry_id 1HHA _atom_sites.fract_transf_matrix[1][1] 0.015537 _atom_sites.fract_transf_matrix[1][2] 0.00897 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ERE A 1 8 8 ERE ERE . J 3 ERE B 1 8 8 ERE ERE . K 4 GOL B 1 1002 1002 GOL GOL . L 3 ERE C 1 8 8 ERE ERE . M 3 ERE D 1 8 8 ERE ERE . N 4 GOL D 1 1001 1001 GOL GOL . O 5 HOH A 1 2001 2001 HOH HOH . O 5 HOH A 2 2002 2002 HOH HOH . O 5 HOH A 3 2003 2003 HOH HOH . O 5 HOH A 4 2004 2004 HOH HOH . O 5 HOH A 5 2005 2005 HOH HOH . O 5 HOH A 6 2006 2006 HOH HOH . O 5 HOH A 7 2007 2007 HOH HOH . O 5 HOH A 8 2008 2008 HOH HOH . O 5 HOH A 9 2009 2009 HOH HOH . O 5 HOH A 10 2010 2010 HOH HOH . O 5 HOH A 11 2011 2011 HOH HOH . O 5 HOH A 12 2012 2012 HOH HOH . O 5 HOH A 13 2013 2013 HOH HOH . O 5 HOH A 14 2014 2014 HOH HOH . O 5 HOH A 15 2015 2015 HOH HOH . O 5 HOH A 16 2016 2016 HOH HOH . P 5 HOH B 1 2001 2001 HOH HOH . P 5 HOH B 2 2002 2002 HOH HOH . P 5 HOH B 3 2003 2003 HOH HOH . P 5 HOH B 4 2004 2004 HOH HOH . P 5 HOH B 5 2005 2005 HOH HOH . P 5 HOH B 6 2006 2006 HOH HOH . P 5 HOH B 7 2007 2007 HOH HOH . P 5 HOH B 8 2008 2008 HOH HOH . P 5 HOH B 9 2009 2009 HOH HOH . P 5 HOH B 10 2010 2010 HOH HOH . P 5 HOH B 11 2011 2011 HOH HOH . P 5 HOH B 12 2012 2012 HOH HOH . P 5 HOH B 13 2013 2013 HOH HOH . P 5 HOH B 14 2014 2014 HOH HOH . P 5 HOH B 15 2015 2015 HOH HOH . P 5 HOH B 16 2016 2016 HOH HOH . P 5 HOH B 17 2017 2017 HOH HOH . P 5 HOH B 18 2018 2018 HOH HOH . P 5 HOH B 19 2019 2019 HOH HOH . P 5 HOH B 20 2020 2020 HOH HOH . P 5 HOH B 21 2021 2021 HOH HOH . P 5 HOH B 22 2022 2022 HOH HOH . P 5 HOH B 23 2023 2023 HOH HOH . P 5 HOH B 24 2024 2024 HOH HOH . P 5 HOH B 25 2025 2025 HOH HOH . P 5 HOH B 26 2026 2026 HOH HOH . P 5 HOH B 27 2027 2027 HOH HOH . P 5 HOH B 28 3004 3004 HOH HOH . Q 5 HOH C 1 2001 2001 HOH HOH . Q 5 HOH C 2 2002 2002 HOH HOH . Q 5 HOH C 3 2003 2003 HOH HOH . Q 5 HOH C 4 2004 2004 HOH HOH . Q 5 HOH C 5 2005 2005 HOH HOH . Q 5 HOH C 6 2006 2006 HOH HOH . Q 5 HOH C 7 2007 2007 HOH HOH . Q 5 HOH C 8 2008 2008 HOH HOH . Q 5 HOH C 9 2009 2009 HOH HOH . Q 5 HOH C 10 2010 2010 HOH HOH . Q 5 HOH C 11 2011 2011 HOH HOH . Q 5 HOH C 12 2012 2012 HOH HOH . Q 5 HOH C 13 2013 2013 HOH HOH . Q 5 HOH C 14 2014 2014 HOH HOH . Q 5 HOH C 15 2015 2015 HOH HOH . Q 5 HOH C 16 2016 2016 HOH HOH . Q 5 HOH C 17 2017 2017 HOH HOH . Q 5 HOH C 18 2018 2018 HOH HOH . R 5 HOH D 1 2001 2001 HOH HOH . R 5 HOH D 2 2002 2002 HOH HOH . R 5 HOH D 3 2003 2003 HOH HOH . R 5 HOH D 4 2004 2004 HOH HOH . R 5 HOH D 5 2005 2005 HOH HOH . R 5 HOH D 6 2006 2006 HOH HOH . R 5 HOH D 7 2007 2007 HOH HOH . R 5 HOH D 8 2008 2008 HOH HOH . R 5 HOH D 9 2009 2009 HOH HOH . R 5 HOH D 10 2010 2010 HOH HOH . R 5 HOH D 11 2011 2011 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ERE . . . J 3 -2.156 25.89 -2.072 1 34.51 ? C1 ERE 8 B 1 HETATM 2 C C2 ERE . . . J 3 -2.29 24.824 -3.105 1 33.71 ? C2 ERE 8 B 1 HETATM 3 C C3 ERE . . . J 3 -1.116 24.616 -4.025 1 37.01 ? C3 ERE 8 B 1 HETATM 4 C C4 ERE . . . J 3 0.151 24.532 -3.181 1 38.27 ? C4 ERE 8 B 1 HETATM 5 C C5 ERE . . . J 3 0.255 25.739 -2.294 1 35.85 ? C5 ERE 8 B 1 HETATM 6 O O5 ERE . . . J 3 -0.88 25.782 -1.405 1 34.13 ? O5 ERE 8 B 1 HETATM 7 C C3A ERE . . . J 3 -1.028 25.639 -5.161 1 37.88 ? C3A ERE 8 B 1 HETATM 8 N N3 ERE . . . J 3 -1.259 23.289 -4.753 1 42.72 ? N3 ERE 8 B 1 HETATM 9 O O4 ERE . . . J 3 1.308 24.4 -4.053 1 42.74 ? O4 ERE 8 B 1 HETATM 10 C C5A ERE . . . J 3 1.503 25.739 -1.404 1 42.36 ? C5A ERE 8 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 10 #