data_1HHO # _model_server_result.job_id ylxthfbtOPIPzmpOpzWjww _model_server_result.datetime_utc '2024-11-23 13:23:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hho # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":143}' # _entry.id 1HHO # _exptl.entry_id 1HHO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HHO _cell.length_a 53.7 _cell.length_b 53.7 _cell.length_c 193.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HHO _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 D FE HEM . A HEM 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc2 D FE HEM . A HEM 143 1_555 E O1 OXY . A OXY 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.657 ? metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 F FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc4 F FE HEM . B HEM 147 1_555 G O1 OXY . B OXY 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1HHO _atom_sites.fract_transf_matrix[1][1] 0.018622 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 142 126 PO4 PO4 . D 4 HEM A 1 143 1 HEM HEM . E 5 OXY A 1 150 1 OXY HEM . F 4 HEM B 1 147 1 HEM HEM . G 5 OXY B 1 150 1 OXY HEM . H 6 HOH A 1 151 9 HOH HOH . H 6 HOH A 2 152 15 HOH HOH . H 6 HOH A 3 153 19 HOH HOH . H 6 HOH A 4 154 20 HOH HOH . H 6 HOH A 5 155 22 HOH HOH . H 6 HOH A 6 156 23 HOH HOH . H 6 HOH A 7 157 26 HOH HOH . H 6 HOH A 8 158 30 HOH HOH . H 6 HOH A 9 159 32 HOH HOH . H 6 HOH A 10 160 33 HOH HOH . H 6 HOH A 11 161 34 HOH HOH . H 6 HOH A 12 162 35 HOH HOH . H 6 HOH A 13 163 36 HOH HOH . H 6 HOH A 14 164 37 HOH HOH . H 6 HOH A 15 165 38 HOH HOH . H 6 HOH A 16 166 39 HOH HOH . H 6 HOH A 17 167 40 HOH HOH . H 6 HOH A 18 168 43 HOH HOH . H 6 HOH A 19 169 44 HOH HOH . H 6 HOH A 20 170 46 HOH HOH . H 6 HOH A 21 171 47 HOH HOH . H 6 HOH A 22 172 48 HOH HOH . H 6 HOH A 23 173 49 HOH HOH . H 6 HOH A 24 174 50 HOH HOH . H 6 HOH A 25 175 51 HOH HOH . H 6 HOH A 26 176 52 HOH HOH . H 6 HOH A 27 177 53 HOH HOH . H 6 HOH A 28 178 54 HOH HOH . H 6 HOH A 29 179 55 HOH HOH . H 6 HOH A 30 180 56 HOH HOH . H 6 HOH A 31 181 57 HOH HOH . H 6 HOH A 32 182 58 HOH HOH . H 6 HOH A 33 183 59 HOH HOH . H 6 HOH A 34 184 60 HOH HOH . H 6 HOH A 35 185 61 HOH HOH . H 6 HOH A 36 186 65 HOH HOH . H 6 HOH A 37 187 66 HOH HOH . H 6 HOH A 38 188 67 HOH HOH . H 6 HOH A 39 189 69 HOH HOH . H 6 HOH A 40 190 96 HOH HOH . H 6 HOH A 41 191 97 HOH HOH . H 6 HOH A 42 192 98 HOH HOH . H 6 HOH A 43 193 100 HOH HOH . H 6 HOH A 44 194 101 HOH HOH . H 6 HOH A 45 195 102 HOH HOH . H 6 HOH A 46 196 103 HOH HOH . H 6 HOH A 47 197 105 HOH HOH . H 6 HOH A 48 198 106 HOH HOH . I 6 HOH B 1 151 1 HOH HOH . I 6 HOH B 2 152 2 HOH HOH . I 6 HOH B 3 153 3 HOH HOH . I 6 HOH B 4 154 4 HOH HOH . I 6 HOH B 5 155 5 HOH HOH . I 6 HOH B 6 156 6 HOH HOH . I 6 HOH B 7 157 7 HOH HOH . I 6 HOH B 8 158 8 HOH HOH . I 6 HOH B 9 159 10 HOH HOH . I 6 HOH B 10 160 12 HOH HOH . I 6 HOH B 11 161 13 HOH HOH . I 6 HOH B 12 162 14 HOH HOH . I 6 HOH B 13 163 16 HOH HOH . I 6 HOH B 14 164 17 HOH HOH . I 6 HOH B 15 165 18 HOH HOH . I 6 HOH B 16 166 21 HOH HOH . I 6 HOH B 17 167 24 HOH HOH . I 6 HOH B 18 168 25 HOH HOH . I 6 HOH B 19 169 64 HOH HOH . I 6 HOH B 20 170 70 HOH HOH . I 6 HOH B 21 171 72 HOH HOH . I 6 HOH B 22 172 73 HOH HOH . I 6 HOH B 23 173 74 HOH HOH . I 6 HOH B 24 174 75 HOH HOH . I 6 HOH B 25 175 76 HOH HOH . I 6 HOH B 26 176 78 HOH HOH . I 6 HOH B 27 177 80 HOH HOH . I 6 HOH B 28 178 81 HOH HOH . I 6 HOH B 29 179 82 HOH HOH . I 6 HOH B 30 180 83 HOH HOH . I 6 HOH B 31 181 84 HOH HOH . I 6 HOH B 32 182 85 HOH HOH . I 6 HOH B 33 183 86 HOH HOH . I 6 HOH B 34 184 87 HOH HOH . I 6 HOH B 35 185 88 HOH HOH . I 6 HOH B 36 186 89 HOH HOH . I 6 HOH B 37 187 90 HOH HOH . I 6 HOH B 38 188 91 HOH HOH . I 6 HOH B 39 189 92 HOH HOH . I 6 HOH B 40 190 93 HOH HOH . I 6 HOH B 41 191 94 HOH HOH . I 6 HOH B 42 192 99 HOH HOH . I 6 HOH B 43 193 107 HOH HOH . I 6 HOH B 44 194 108 HOH HOH . I 6 HOH B 45 195 109 HOH HOH . I 6 HOH B 46 196 110 HOH HOH . I 6 HOH B 47 197 111 HOH HOH . I 6 HOH B 48 198 112 HOH HOH . I 6 HOH B 49 199 113 HOH HOH . I 6 HOH B 50 200 114 HOH HOH . I 6 HOH B 51 201 115 HOH HOH . I 6 HOH B 52 202 116 HOH HOH . I 6 HOH B 53 203 117 HOH HOH . I 6 HOH B 54 204 118 HOH HOH . I 6 HOH B 55 205 119 HOH HOH . I 6 HOH B 56 206 120 HOH HOH . I 6 HOH B 57 207 121 HOH HOH . I 6 HOH B 58 208 122 HOH HOH . I 6 HOH B 59 209 123 HOH HOH . I 6 HOH B 60 210 124 HOH HOH . I 6 HOH B 61 211 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 4 42.941 28.282 17.468 1 37.63 ? CHA HEM 143 A 1 HETATM 2 C CHB HEM . . . D 4 41.209 32.623 16.293 1 20.83 ? CHB HEM 143 A 1 HETATM 3 C CHC HEM . . . D 4 37.827 30.4 13.746 1 15.42 ? CHC HEM 143 A 1 HETATM 4 C CHD HEM . . . D 4 39.642 26.017 14.675 1 23.83 ? CHD HEM 143 A 1 HETATM 5 C C1A HEM . . . D 4 42.707 29.687 17.428 1 36.63 ? C1A HEM 143 A 1 HETATM 6 C C2A HEM . . . D 4 43.463 30.674 18.179 1 44.72 ? C2A HEM 143 A 1 HETATM 7 C C3A HEM . . . D 4 42.947 31.877 17.823 1 25.81 ? C3A HEM 143 A 1 HETATM 8 C C4A HEM . . . D 4 41.918 31.623 16.895 1 18.21 ? C4A HEM 143 A 1 HETATM 9 C CMA HEM . . . D 4 43.222 33.254 18.339 1 27.43 ? CMA HEM 143 A 1 HETATM 10 C CAA HEM . . . D 4 44.835 30.411 18.773 1 26.62 ? CAA HEM 143 A 1 HETATM 11 C CBA HEM . . . D 4 45.982 31.363 18.497 1 54.23 ? CBA HEM 143 A 1 HETATM 12 C CGA HEM . . . D 4 47.12 30.916 19.412 1 76.55 ? CGA HEM 143 A 1 HETATM 13 O O1A HEM . . . D 4 47.552 31.659 20.303 1 73.19 ? O1A HEM 143 A 1 HETATM 14 O O2A HEM . . . D 4 47.521 29.771 19.246 1 60.72 ? O2A HEM 143 A 1 HETATM 15 C C1B HEM . . . D 4 40.119 32.376 15.495 1 24.25 ? C1B HEM 143 A 1 HETATM 16 C C2B HEM . . . D 4 39.202 33.401 15.034 1 19.57 ? C2B HEM 143 A 1 HETATM 17 C C3B HEM . . . D 4 38.223 32.781 14.3 1 24.71 ? C3B HEM 143 A 1 HETATM 18 C C4B HEM . . . D 4 38.585 31.373 14.354 1 35.72 ? C4B HEM 143 A 1 HETATM 19 C CMB HEM . . . D 4 39.514 34.861 15.191 1 36.88 ? CMB HEM 143 A 1 HETATM 20 C CAB HEM . . . D 4 37.235 33.316 13.271 1 15.05 ? CAB HEM 143 A 1 HETATM 21 C CBB HEM . . . D 4 36.891 34.665 13.127 1 36.06 ? CBB HEM 143 A 1 HETATM 22 C C1C HEM . . . D 4 38.048 29.022 13.804 1 36.72 ? C1C HEM 143 A 1 HETATM 23 C C2C HEM . . . D 4 37.203 28.051 13.124 1 33.12 ? C2C HEM 143 A 1 HETATM 24 C C3C HEM . . . D 4 37.703 26.813 13.379 1 28.41 ? C3C HEM 143 A 1 HETATM 25 C C4C HEM . . . D 4 38.849 27.025 14.209 1 13.87 ? C4C HEM 143 A 1 HETATM 26 C CMC HEM . . . D 4 36.214 28.409 12.061 1 61.1 ? CMC HEM 143 A 1 HETATM 27 C CAC HEM . . . D 4 37.153 25.47 12.987 1 21.94 ? CAC HEM 143 A 1 HETATM 28 C CBC HEM . . . D 4 35.941 25.02 13.456 1 26.33 ? CBC HEM 143 A 1 HETATM 29 C C1D HEM . . . D 4 40.751 26.281 15.495 1 29.29 ? C1D HEM 143 A 1 HETATM 30 C C2D HEM . . . D 4 41.595 25.274 16.048 1 25.77 ? C2D HEM 143 A 1 HETATM 31 C C3D HEM . . . D 4 42.512 25.887 16.791 1 34.3 ? C3D HEM 143 A 1 HETATM 32 C C4D HEM . . . D 4 42.256 27.3 16.721 1 40.98 ? C4D HEM 143 A 1 HETATM 33 C CMD HEM . . . D 4 41.22 23.836 16.224 1 29.3 ? CMD HEM 143 A 1 HETATM 34 C CAD HEM . . . D 4 43.488 25.16 17.67 1 30.74 ? CAD HEM 143 A 1 HETATM 35 C CBD HEM . . . D 4 42.941 24.816 19.049 1 21.68 ? CBD HEM 143 A 1 HETATM 36 C CGD HEM . . . D 4 44.028 24.053 19.773 1 18.95 ? CGD HEM 143 A 1 HETATM 37 O O1D HEM . . . D 4 44.517 23.083 19.199 1 38.88 ? O1D HEM 143 A 1 HETATM 38 O O2D HEM . . . D 4 44.385 24.454 20.883 1 26.05 ? O2D HEM 143 A 1 HETATM 39 N NA HEM . . . D 4 41.733 30.289 16.697 1 29.79 ? NA HEM 143 A 1 HETATM 40 N NB HEM . . . D 4 39.735 31.127 15.103 1 33.41 ? NB HEM 143 A 1 HETATM 41 N NC HEM . . . D 4 39.061 28.391 14.492 1 23.46 ? NC HEM 143 A 1 HETATM 42 N ND HEM . . . D 4 41.176 27.517 15.877 1 36.37 ? ND HEM 143 A 1 HETATM 43 FE FE HEM . . . D 4 40.513 29.278 15.451 1 27.37 ? FE HEM 143 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #