data_1HHY
#
_model_server_result.job_id            UVESHFucQdfsKBP5v1lpNQ 
_model_server_result.datetime_utc      '2024-11-26 04:04:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hhy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":12}' 
#
_entry.id    1HHY 
#
_exptl.entry_id    1HHY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              89.093 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-ALANINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1HHY 
_cell.length_a            48.444 
_cell.length_b            48.444 
_cell.length_c            43.086 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HHY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
'PISA 1.18' dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dodecameric 12 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 
A,C,D,E,F,L 2 1,2 
A,B,C,D,E,F,G,H,I,J,K,L,M 3 1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+3/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 24.222 41.953735 64.629 
3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -24.222 41.953735 0 
4 'crystal symmetry operation' 11_556 -x+y,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 0 0 64.629 
5 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 24.222 41.953735 0 
6 'crystal symmetry operation' 12_566 x,x-y+1,-z+3/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -24.222 41.953735 64.629 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MLU 1 A MLU 1 1_555 A N OMZ 2 A OMZ 2 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.41 ? 
covale ? covale2 A C MLU 1 A MLU 1 1_555 A N OMZ 2 A OMZ 2 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.449 ? 
covale ? covale3 A C OMZ 2 A OMZ 2 1_555 A N ASN 3 A ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.237 ? 
covale ? covale4 A OH OMZ 2 A OMZ 2 1_555 A C3 GHP 4 A GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? 
covale ? covale5 A C ASN 3 A ASN 3 1_555 A N GHP 4 A GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale6 A C GHP 4 A GHP 4 1_555 A N GHP 5 A GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale7 A C5 GHP 4 A GHP 4 1_555 A OCZ OMY 6 A OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? 
covale ? covale8 A C GHP 5 A GHP 5 1_555 A N OMY 6 A OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? 
covale ? covale9 A C5 GHP 5 A GHP 5 1_555 A CG1 3FG 7 A 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? 
covale ? covale10 A C OMY 6 A OMY 6 1_555 A N 3FG 7 A 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale11 A ODE OMY 6 A OMY 6 1_555 C C1 DVC . A DVC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? 
covale ? covale12 D C DAL . A DAL 11 1_555 E N DAL . A DAL 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
covale ? covale13 B C MLU 1 B MLU 1 1_555 B N OMZ 2 B OMZ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? 
covale ? covale14 B C OMZ 2 B OMZ 2 1_555 B N ASN 3 B ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale15 B OH OMZ 2 B OMZ 2 1_555 B C3 GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? 
covale ? covale16 B C ASN 3 B ASN 3 1_555 B N GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale17 B C GHP 4 B GHP 4 1_555 B N GHP 5 B GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale18 B C5 GHP 4 B GHP 4 1_555 B OCZ OMY 6 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? 
covale ? covale19 B C GHP 5 B GHP 5 1_555 B N OMY 6 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale20 B C5 GHP 5 B GHP 5 1_555 B CG1 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? 
covale ? covale21 B C OMY 6 B OMY 6 1_555 B N 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale22 B ODE OMY 6 B OMY 6 1_555 G C1 DVC . B DVC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? 
covale ? covale23 H C DAL . B DAL 11 1_555 I N DAL . B DAL 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? 
metalc ? metalc1 A N MLU 1 A MLU 1 1_555 F NA NA . A NA 1001 1_555 ? A ? ? ? ? ? ? ? ? ? ? 3.127 ? 
metalc ? metalc2 F NA NA . A NA 1001 1_555 L O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? 
metalc ? metalc3 F NA NA . A NA 1001 1_555 L O HOH . A HOH 2022 10_666 ? ? ? ? ? ? ? ? ? ? ? ? 3.105 ? 
metalc ? metalc4 F NA NA . A NA 1001 1_555 L O HOH . A HOH 2023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.179 ? 
metalc ? metalc5 J O2 PGO . B PGO 1001 3_565 K NA NA . B NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc6 J O1 PGO . B PGO 1001 1_555 K NA NA . B NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc7 J O1 PGO . B PGO 1001 2_665 K NA NA . B NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc8 J O2 PGO . B PGO 1001 1_555 K NA NA . B NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc9 J O2 PGO . B PGO 1001 2_665 K NA NA . B NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc10 J O1 PGO . B PGO 1001 3_565 K NA NA . B NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
#
_chem_comp.formula           'C3 H7 N O2' 
_chem_comp.formula_weight    89.093 
_chem_comp.id                DAL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-ALANINE 
_chem_comp.type              'd-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1HHY 
_atom_sites.fract_transf_matrix[1][1]    0.020642 
_atom_sites.fract_transf_matrix[1][2]    0.011918 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023836 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023209 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DVC A 1 9 9 DVC DVC . 
D 3 DAL A 1 11 11 DAL DAL . 
E 3 DAL A 1 12 12 DAL DAL . 
F 4 NA A 1 1001 1001 NA NA . 
G 2 DVC B 1 9 9 DVC DVC . 
H 3 DAL B 1 11 11 DAL DAL . 
I 3 DAL B 1 12 12 DAL DAL . 
J 5 PGO B 1 1001 1001 PGO PGO . 
K 4 NA B 1 1002 1002 NA NA . 
L 6 HOH A 1 2001 2001 HOH HOH . 
L 6 HOH A 2 2002 2002 HOH HOH . 
L 6 HOH A 3 2003 2003 HOH HOH . 
L 6 HOH A 4 2004 2004 HOH HOH . 
L 6 HOH A 5 2005 2005 HOH HOH . 
L 6 HOH A 6 2006 2006 HOH HOH . 
L 6 HOH A 7 2007 2007 HOH HOH . 
L 6 HOH A 8 2008 2008 HOH HOH . 
L 6 HOH A 9 2009 2009 HOH HOH . 
L 6 HOH A 10 2010 2010 HOH HOH . 
L 6 HOH A 11 2011 2011 HOH HOH . 
L 6 HOH A 12 2012 2012 HOH HOH . 
L 6 HOH A 13 2013 2013 HOH HOH . 
L 6 HOH A 14 2014 2014 HOH HOH . 
L 6 HOH A 15 2015 2015 HOH HOH . 
L 6 HOH A 16 2016 2016 HOH HOH . 
L 6 HOH A 17 2017 2017 HOH HOH . 
L 6 HOH A 18 2018 2018 HOH HOH . 
L 6 HOH A 19 2019 2019 HOH HOH . 
L 6 HOH A 20 2020 2020 HOH HOH . 
L 6 HOH A 21 2021 2021 HOH HOH . 
L 6 HOH A 22 2022 2022 HOH HOH . 
L 6 HOH A 23 2023 2023 HOH HOH . 
M 6 HOH B 1 2001 2001 HOH HOH . 
M 6 HOH B 2 2002 2002 HOH HOH . 
M 6 HOH B 3 2003 2003 HOH HOH . 
M 6 HOH B 4 2004 2004 HOH HOH . 
M 6 HOH B 5 2005 2005 HOH HOH . 
M 6 HOH B 6 2006 2006 HOH HOH . 
M 6 HOH B 7 2007 2007 HOH HOH . 
M 6 HOH B 8 2008 2008 HOH HOH . 
M 6 HOH B 9 2009 2009 HOH HOH . 
M 6 HOH B 10 2010 2010 HOH HOH . 
M 6 HOH B 11 2011 2011 HOH HOH . 
M 6 HOH B 12 2012 2012 HOH HOH . 
M 6 HOH B 13 2013 2013 HOH HOH . 
M 6 HOH B 14 2014 2014 HOH HOH . 
M 6 HOH B 15 2015 2015 HOH HOH . 
M 6 HOH B 16 2016 2016 HOH HOH . 
M 6 HOH B 17 2017 2017 HOH HOH . 
M 6 HOH B 18 2018 2018 HOH HOH . 
M 6 HOH B 19 2019 2019 HOH HOH . 
M 6 HOH B 20 2020 2020 HOH HOH . 
M 6 HOH B 21 2021 2021 HOH HOH . 
M 6 HOH B 22 2022 2022 HOH HOH . 
M 6 HOH B 23 2023 2023 HOH HOH . 
M 6 HOH B 24 2024 2024 HOH HOH . 
M 6 HOH B 25 2025 2025 HOH HOH . 
M 6 HOH B 26 2026 2026 HOH HOH . 
M 6 HOH B 27 2027 2027 HOH HOH . 
M 6 HOH B 28 2028 2028 HOH HOH . 
M 6 HOH B 29 2029 2029 HOH HOH . 
M 6 HOH B 30 2030 2030 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N DAL . . . E 3 9.915 23.551 30.135 1 9.83 ? N DAL 12 A 1 
HETATM 2 C CA DAL . . . E 3 9.612 24.674 30.975 1 10.59 ? CA DAL 12 A 1 
HETATM 3 C CB DAL . . . E 3 8.12 24.978 30.96 1 11.61 ? CB DAL 12 A 1 
HETATM 4 C C DAL . . . E 3 10.366 25.913 30.477 1 9 ? C DAL 12 A 1 
HETATM 5 O O DAL . . . E 3 10.985 25.897 29.381 1 9.17 ? O DAL 12 A 1 
HETATM 6 O OXT DAL . . . E 3 10.309 26.927 31.232 1 10.61 ? OXT DAL 12 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#