data_1HHZ
#
_model_server_result.job_id            VNKJRhEnXIIO67vSegd7QA 
_model_server_result.datetime_utc      '2024-11-05 08:09:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hhz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1001}' 
#
_entry.id    1HHZ 
#
_exptl.entry_id    1HHZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              76.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            R-1,2-PROPANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1HHZ 
_cell.length_a            48.29 
_cell.length_b            48.29 
_cell.length_c            39.3 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HHZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,C,E,F,J,K,L,M,O,P,R,S 1 1 
A,D,G,H,I,N,Q 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_556 x-y,-y,-z+4/3 1 0 0 0 -1 0 0 0 -1 0 0 52.4 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 I N N 
? 4 K N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MLU 1 A MLU 1 1_555 A N OMZ 2 A OMZ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? 
covale ? covale2 A C OMZ 2 A OMZ 2 1_555 A N ASN 3 A ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale3 A OH OMZ 2 A OMZ 2 1_555 A C3 GHP 4 A GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? 
covale ? covale4 A C ASN 3 A ASN 3 1_555 A N GHP 4 A GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale5 A C GHP 4 A GHP 4 1_555 A N GHP 5 A GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale6 A C5 GHP 4 A GHP 4 1_555 A OCZ OMY 6 A OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? 
covale ? covale7 A C GHP 5 A GHP 5 1_555 A N OMY 6 A OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale8 A C5 GHP 5 A GHP 5 1_555 A CG1 3FG 7 A 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? 
covale ? covale9 A C OMY 6 A OMY 6 1_555 A N 3FG 7 A 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? 
covale ? covale10 A ODE OMY 6 A OMY 6 1_555 G C1 DVC . A DVC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? 
covale ? covale11 B C MLU 1 B MLU 1 1_555 B N OMZ 2 B OMZ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
covale ? covale12 B C OMZ 2 B OMZ 2 1_555 B N ASN 3 B ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? 
covale ? covale13 B OH OMZ 2 B OMZ 2 1_555 B C3 GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? 
covale ? covale14 B C ASN 3 B ASN 3 1_555 B N GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale15 B C GHP 4 B GHP 4 1_555 B N GHP 5 B GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale16 B C5 GHP 4 B GHP 4 1_555 B OCZ OMY 6 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? 
covale ? covale17 B C GHP 5 B GHP 5 1_555 B N OMY 6 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale18 B C5 GHP 5 B GHP 5 1_555 B CG1 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.486 ? 
covale ? covale19 B C OMY 6 B OMY 6 1_555 B N 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale20 B ODE OMY 6 B OMY 6 1_555 J C1 DVC . B DVC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? 
covale ? covale21 C C MLU 1 C MLU 1 1_555 C N OMZ 2 C OMZ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? 
covale ? covale22 C C OMZ 2 C OMZ 2 1_555 C N ASN 3 C ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? 
covale ? covale23 C OH OMZ 2 C OMZ 2 1_555 C C3 GHP 4 C GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? 
covale ? covale24 C C ASN 3 C ASN 3 1_555 C N GHP 4 C GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale25 C C GHP 4 C GHP 4 1_555 C N GHP 5 C GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale26 C C5 GHP 4 C GHP 4 1_555 C OCZ OMY 6 C OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? 
covale ? covale27 C C GHP 5 C GHP 5 1_555 C N OMY 6 C OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale28 C C5 GHP 5 C GHP 5 1_555 C CG1 3FG 7 C 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? 
covale ? covale29 C C OMY 6 C OMY 6 1_555 C N 3FG 7 C 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale30 C ODE OMY 6 C OMY 6 1_555 L C1 DVC . C DVC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? 
covale ? covale31 D CD FGA 2 D FGA 2 1_555 D N LYS 3 D LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale32 D C LYS 3 D LYS 3 1_555 D N DAL 4 D DAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? 
covale ? covale33 D C DAL 4 D DAL 4 1_555 D N DAL 5 D DAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? 
covale ? covale34 E C DAL 1 E DAL 1 1_555 E N FGA 2 E FGA 2 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale35 E C DAL 1 E DAL 1 1_555 E N FGA 2 E FGA 2 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.362 ? 
covale ? covale36 E CD FGA 2 E FGA 2 1_555 E N LYS 3 E LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale37 E C LYS 3 E LYS 3 1_555 E N DAL 4 E DAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale38 E C DAL 4 E DAL 4 1_555 E N DAL 5 E DAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale39 F CD FGA 2 F FGA 2 1_555 F N LYS 3 F LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? 
covale ? covale40 F C LYS 3 F LYS 3 1_555 F N DAL 4 F DAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale41 F C DAL 4 F DAL 4 1_555 F N DAL 5 F DAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C3 H8 O2' 
_chem_comp.formula_weight    76.094 
_chem_comp.id                PGR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              R-1,2-PROPANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1HHZ 
_atom_sites.fract_transf_matrix[1][1]    0.020708 
_atom_sites.fract_transf_matrix[1][2]    0.011956 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023912 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025445 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 DVC A 1 9 9 DVC DVC . 
H 4 PGR A 1 1001 1001 PGR PGR . 
I 4 PGR A 1 1002 1002 PGR PGR . 
J 3 DVC B 1 9 9 DVC DVC . 
K 4 PGR B 1 1001 1001 PGR PGR . 
L 3 DVC C 1 9 9 DVC DVC . 
M 4 PGR C 1 1001 1001 PGR PGR . 
N 5 HOH A 1 2001 2001 HOH HOH . 
N 5 HOH A 2 2002 2002 HOH HOH . 
N 5 HOH A 3 2003 2003 HOH HOH . 
N 5 HOH A 4 2004 2004 HOH HOH . 
N 5 HOH A 5 2005 2005 HOH HOH . 
N 5 HOH A 6 2006 2006 HOH HOH . 
N 5 HOH A 7 2007 2007 HOH HOH . 
N 5 HOH A 8 2008 2008 HOH HOH . 
N 5 HOH A 9 2009 2009 HOH HOH . 
N 5 HOH A 10 2010 2010 HOH HOH . 
N 5 HOH A 11 2011 2011 HOH HOH . 
N 5 HOH A 12 2012 2012 HOH HOH . 
N 5 HOH A 13 2013 2013 HOH HOH . 
N 5 HOH A 14 2014 2014 HOH HOH . 
N 5 HOH A 15 2015 2015 HOH HOH . 
N 5 HOH A 16 2016 2016 HOH HOH . 
N 5 HOH A 17 2017 2017 HOH HOH . 
N 5 HOH A 18 2018 2018 HOH HOH . 
N 5 HOH A 19 2019 2019 HOH HOH . 
N 5 HOH A 20 2020 2020 HOH HOH . 
N 5 HOH A 21 2021 2021 HOH HOH . 
N 5 HOH A 22 2022 2022 HOH HOH . 
N 5 HOH A 23 2023 2023 HOH HOH . 
N 5 HOH A 24 2024 2024 HOH HOH . 
N 5 HOH A 25 2025 2025 HOH HOH . 
O 5 HOH B 1 2001 2001 HOH HOH . 
O 5 HOH B 2 2002 2002 HOH HOH . 
O 5 HOH B 3 2003 2003 HOH HOH . 
O 5 HOH B 4 2004 2004 HOH HOH . 
O 5 HOH B 5 2005 2005 HOH HOH . 
O 5 HOH B 6 2006 2006 HOH HOH . 
O 5 HOH B 7 2007 2007 HOH HOH . 
O 5 HOH B 8 2008 2008 HOH HOH . 
O 5 HOH B 9 2009 2009 HOH HOH . 
O 5 HOH B 10 2010 2010 HOH HOH . 
O 5 HOH B 11 2011 2011 HOH HOH . 
O 5 HOH B 12 2012 2012 HOH HOH . 
O 5 HOH B 13 2013 2013 HOH HOH . 
O 5 HOH B 14 2014 2014 HOH HOH . 
O 5 HOH B 15 2015 2015 HOH HOH . 
O 5 HOH B 16 2016 2016 HOH HOH . 
O 5 HOH B 17 2017 2017 HOH HOH . 
O 5 HOH B 18 2018 2018 HOH HOH . 
O 5 HOH B 19 2019 2019 HOH HOH . 
O 5 HOH B 20 2020 2020 HOH HOH . 
O 5 HOH B 21 2021 2021 HOH HOH . 
O 5 HOH B 22 2022 2022 HOH HOH . 
O 5 HOH B 23 2023 2023 HOH HOH . 
O 5 HOH B 24 2024 2024 HOH HOH . 
O 5 HOH B 25 2025 2025 HOH HOH . 
O 5 HOH B 26 2026 2026 HOH HOH . 
O 5 HOH B 27 2027 2027 HOH HOH . 
O 5 HOH B 28 2028 2028 HOH HOH . 
O 5 HOH B 29 2029 2029 HOH HOH . 
P 5 HOH C 1 2001 2001 HOH HOH . 
P 5 HOH C 2 2002 2002 HOH HOH . 
P 5 HOH C 3 2003 2003 HOH HOH . 
P 5 HOH C 4 2004 2004 HOH HOH . 
P 5 HOH C 5 2005 2005 HOH HOH . 
P 5 HOH C 6 2006 2006 HOH HOH . 
P 5 HOH C 7 2007 2007 HOH HOH . 
P 5 HOH C 8 2008 2008 HOH HOH . 
P 5 HOH C 9 2009 2009 HOH HOH . 
P 5 HOH C 10 2010 2010 HOH HOH . 
P 5 HOH C 11 2011 2011 HOH HOH . 
P 5 HOH C 12 2012 2012 HOH HOH . 
P 5 HOH C 13 2013 2013 HOH HOH . 
P 5 HOH C 14 2014 2014 HOH HOH . 
P 5 HOH C 15 2015 2015 HOH HOH . 
P 5 HOH C 16 2016 2016 HOH HOH . 
P 5 HOH C 17 2017 2017 HOH HOH . 
P 5 HOH C 18 2018 2018 HOH HOH . 
Q 5 HOH D 1 2001 2001 HOH HOH . 
Q 5 HOH D 2 2002 2002 HOH HOH . 
Q 5 HOH D 3 2003 2003 HOH HOH . 
Q 5 HOH D 4 2004 2004 HOH HOH . 
Q 5 HOH D 5 2005 2005 HOH HOH . 
Q 5 HOH D 6 2006 2006 HOH HOH . 
Q 5 HOH D 7 2007 2007 HOH HOH . 
Q 5 HOH D 8 2008 2008 HOH HOH . 
R 5 HOH E 1 2001 2001 HOH HOH . 
R 5 HOH E 2 2002 2002 HOH HOH . 
R 5 HOH E 3 2003 2003 HOH HOH . 
R 5 HOH E 4 2004 2004 HOH HOH . 
R 5 HOH E 5 2005 2005 HOH HOH . 
R 5 HOH E 6 2006 2006 HOH HOH . 
R 5 HOH E 7 2007 2007 HOH HOH . 
R 5 HOH E 8 2008 2008 HOH HOH . 
R 5 HOH E 9 2009 2009 HOH HOH . 
R 5 HOH E 10 2010 2010 HOH HOH . 
R 5 HOH E 11 2011 2011 HOH HOH . 
S 5 HOH F 1 2001 2001 HOH HOH . 
S 5 HOH F 2 2002 2002 HOH HOH . 
S 5 HOH F 3 2003 2003 HOH HOH . 
S 5 HOH F 4 2004 2004 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGR . . . H 4 43.461 1.135 21.158 0.4 41.2 ? C1 PGR 1001 A 1 
HETATM 2 C C2 PGR . . . H 4 44.144 0.665 22.57 0.4 29.49 ? C2 PGR 1001 A 1 
HETATM 3 C C3 PGR . . . H 4 44.106 1.866 23.668 0.4 23.61 ? C3 PGR 1001 A 1 
HETATM 4 O O1 PGR . . . H 4 43.848 0.053 20.29 0.4 36.2 ? O1 PGR 1001 A 1 
HETATM 5 O O2 PGR . . . H 4 43.601 -0.485 23.039 0.4 25.5 ? O2 PGR 1001 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           5 
#