data_1HHZ # _model_server_result.job_id Z8B8Gct_jQdeerdAGXKBMw _model_server_result.datetime_utc '2024-11-22 17:32:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hhz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":9}' # _entry.id 1HHZ # _exptl.entry_id 1HHZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 177.198 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description (2R,4S,6S)-4-azanyl-4,6-dimethyl-oxane-2,5,5-triol _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1HHZ _cell.length_a 48.29 _cell.length_b 48.29 _cell.length_c 39.3 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HHZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,E,F,J,K,L,M,O,P,R,S 1 1 A,D,G,H,I,N,Q 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_556 x-y,-y,-z+4/3 1 0 0 0 -1 0 0 0 -1 0 0 52.4 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MLU 1 A MLU 1 1_555 A N OMZ 2 A OMZ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale2 A C OMZ 2 A OMZ 2 1_555 A N ASN 3 A ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A OH OMZ 2 A OMZ 2 1_555 A C3 GHP 4 A GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale4 A C ASN 3 A ASN 3 1_555 A N GHP 4 A GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 A C GHP 4 A GHP 4 1_555 A N GHP 5 A GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale6 A C5 GHP 4 A GHP 4 1_555 A OCZ OMY 6 A OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale7 A C GHP 5 A GHP 5 1_555 A N OMY 6 A OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale8 A C5 GHP 5 A GHP 5 1_555 A CG1 3FG 7 A 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? covale ? covale9 A C OMY 6 A OMY 6 1_555 A N 3FG 7 A 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale10 A ODE OMY 6 A OMY 6 1_555 G C1 DVC . A DVC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale11 B C MLU 1 B MLU 1 1_555 B N OMZ 2 B OMZ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale12 B C OMZ 2 B OMZ 2 1_555 B N ASN 3 B ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? covale ? covale13 B OH OMZ 2 B OMZ 2 1_555 B C3 GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale14 B C ASN 3 B ASN 3 1_555 B N GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale15 B C GHP 4 B GHP 4 1_555 B N GHP 5 B GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale16 B C5 GHP 4 B GHP 4 1_555 B OCZ OMY 6 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale17 B C GHP 5 B GHP 5 1_555 B N OMY 6 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale18 B C5 GHP 5 B GHP 5 1_555 B CG1 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.486 ? covale ? covale19 B C OMY 6 B OMY 6 1_555 B N 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale20 B ODE OMY 6 B OMY 6 1_555 J C1 DVC . B DVC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale21 C C MLU 1 C MLU 1 1_555 C N OMZ 2 C OMZ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale22 C C OMZ 2 C OMZ 2 1_555 C N ASN 3 C ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale23 C OH OMZ 2 C OMZ 2 1_555 C C3 GHP 4 C GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale24 C C ASN 3 C ASN 3 1_555 C N GHP 4 C GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale25 C C GHP 4 C GHP 4 1_555 C N GHP 5 C GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale26 C C5 GHP 4 C GHP 4 1_555 C OCZ OMY 6 C OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale27 C C GHP 5 C GHP 5 1_555 C N OMY 6 C OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale28 C C5 GHP 5 C GHP 5 1_555 C CG1 3FG 7 C 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? covale ? covale29 C C OMY 6 C OMY 6 1_555 C N 3FG 7 C 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale30 C ODE OMY 6 C OMY 6 1_555 L C1 DVC . C DVC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale31 D CD FGA 2 D FGA 2 1_555 D N LYS 3 D LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale32 D C LYS 3 D LYS 3 1_555 D N DAL 4 D DAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale33 D C DAL 4 D DAL 4 1_555 D N DAL 5 D DAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale34 E C DAL 1 E DAL 1 1_555 E N FGA 2 E FGA 2 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale35 E C DAL 1 E DAL 1 1_555 E N FGA 2 E FGA 2 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale36 E CD FGA 2 E FGA 2 1_555 E N LYS 3 E LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale37 E C LYS 3 E LYS 3 1_555 E N DAL 4 E DAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale38 E C DAL 4 E DAL 4 1_555 E N DAL 5 E DAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale39 F CD FGA 2 F FGA 2 1_555 F N LYS 3 F LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale40 F C LYS 3 F LYS 3 1_555 F N DAL 4 F DAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale41 F C DAL 4 F DAL 4 1_555 F N DAL 5 F DAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C7 H15 N O4' _chem_comp.formula_weight 177.198 _chem_comp.id DVC _chem_comp.mon_nstd_flag . _chem_comp.name (2R,4S,6S)-4-azanyl-4,6-dimethyl-oxane-2,5,5-triol _chem_comp.type 'l-saccharide, alpha linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1HHZ _atom_sites.fract_transf_matrix[1][1] 0.020708 _atom_sites.fract_transf_matrix[1][2] 0.011956 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 DVC A 1 9 9 DVC DVC . H 4 PGR A 1 1001 1001 PGR PGR . I 4 PGR A 1 1002 1002 PGR PGR . J 3 DVC B 1 9 9 DVC DVC . K 4 PGR B 1 1001 1001 PGR PGR . L 3 DVC C 1 9 9 DVC DVC . M 4 PGR C 1 1001 1001 PGR PGR . N 5 HOH A 1 2001 2001 HOH HOH . N 5 HOH A 2 2002 2002 HOH HOH . N 5 HOH A 3 2003 2003 HOH HOH . N 5 HOH A 4 2004 2004 HOH HOH . N 5 HOH A 5 2005 2005 HOH HOH . N 5 HOH A 6 2006 2006 HOH HOH . N 5 HOH A 7 2007 2007 HOH HOH . N 5 HOH A 8 2008 2008 HOH HOH . N 5 HOH A 9 2009 2009 HOH HOH . N 5 HOH A 10 2010 2010 HOH HOH . N 5 HOH A 11 2011 2011 HOH HOH . N 5 HOH A 12 2012 2012 HOH HOH . N 5 HOH A 13 2013 2013 HOH HOH . N 5 HOH A 14 2014 2014 HOH HOH . N 5 HOH A 15 2015 2015 HOH HOH . N 5 HOH A 16 2016 2016 HOH HOH . N 5 HOH A 17 2017 2017 HOH HOH . N 5 HOH A 18 2018 2018 HOH HOH . N 5 HOH A 19 2019 2019 HOH HOH . N 5 HOH A 20 2020 2020 HOH HOH . N 5 HOH A 21 2021 2021 HOH HOH . N 5 HOH A 22 2022 2022 HOH HOH . N 5 HOH A 23 2023 2023 HOH HOH . N 5 HOH A 24 2024 2024 HOH HOH . N 5 HOH A 25 2025 2025 HOH HOH . O 5 HOH B 1 2001 2001 HOH HOH . O 5 HOH B 2 2002 2002 HOH HOH . O 5 HOH B 3 2003 2003 HOH HOH . O 5 HOH B 4 2004 2004 HOH HOH . O 5 HOH B 5 2005 2005 HOH HOH . O 5 HOH B 6 2006 2006 HOH HOH . O 5 HOH B 7 2007 2007 HOH HOH . O 5 HOH B 8 2008 2008 HOH HOH . O 5 HOH B 9 2009 2009 HOH HOH . O 5 HOH B 10 2010 2010 HOH HOH . O 5 HOH B 11 2011 2011 HOH HOH . O 5 HOH B 12 2012 2012 HOH HOH . O 5 HOH B 13 2013 2013 HOH HOH . O 5 HOH B 14 2014 2014 HOH HOH . O 5 HOH B 15 2015 2015 HOH HOH . O 5 HOH B 16 2016 2016 HOH HOH . O 5 HOH B 17 2017 2017 HOH HOH . O 5 HOH B 18 2018 2018 HOH HOH . O 5 HOH B 19 2019 2019 HOH HOH . O 5 HOH B 20 2020 2020 HOH HOH . O 5 HOH B 21 2021 2021 HOH HOH . O 5 HOH B 22 2022 2022 HOH HOH . O 5 HOH B 23 2023 2023 HOH HOH . O 5 HOH B 24 2024 2024 HOH HOH . O 5 HOH B 25 2025 2025 HOH HOH . O 5 HOH B 26 2026 2026 HOH HOH . O 5 HOH B 27 2027 2027 HOH HOH . O 5 HOH B 28 2028 2028 HOH HOH . O 5 HOH B 29 2029 2029 HOH HOH . P 5 HOH C 1 2001 2001 HOH HOH . P 5 HOH C 2 2002 2002 HOH HOH . P 5 HOH C 3 2003 2003 HOH HOH . P 5 HOH C 4 2004 2004 HOH HOH . P 5 HOH C 5 2005 2005 HOH HOH . P 5 HOH C 6 2006 2006 HOH HOH . P 5 HOH C 7 2007 2007 HOH HOH . P 5 HOH C 8 2008 2008 HOH HOH . P 5 HOH C 9 2009 2009 HOH HOH . P 5 HOH C 10 2010 2010 HOH HOH . P 5 HOH C 11 2011 2011 HOH HOH . P 5 HOH C 12 2012 2012 HOH HOH . P 5 HOH C 13 2013 2013 HOH HOH . P 5 HOH C 14 2014 2014 HOH HOH . P 5 HOH C 15 2015 2015 HOH HOH . P 5 HOH C 16 2016 2016 HOH HOH . P 5 HOH C 17 2017 2017 HOH HOH . P 5 HOH C 18 2018 2018 HOH HOH . Q 5 HOH D 1 2001 2001 HOH HOH . Q 5 HOH D 2 2002 2002 HOH HOH . Q 5 HOH D 3 2003 2003 HOH HOH . Q 5 HOH D 4 2004 2004 HOH HOH . Q 5 HOH D 5 2005 2005 HOH HOH . Q 5 HOH D 6 2006 2006 HOH HOH . Q 5 HOH D 7 2007 2007 HOH HOH . Q 5 HOH D 8 2008 2008 HOH HOH . R 5 HOH E 1 2001 2001 HOH HOH . R 5 HOH E 2 2002 2002 HOH HOH . R 5 HOH E 3 2003 2003 HOH HOH . R 5 HOH E 4 2004 2004 HOH HOH . R 5 HOH E 5 2005 2005 HOH HOH . R 5 HOH E 6 2006 2006 HOH HOH . R 5 HOH E 7 2007 2007 HOH HOH . R 5 HOH E 8 2008 2008 HOH HOH . R 5 HOH E 9 2009 2009 HOH HOH . R 5 HOH E 10 2010 2010 HOH HOH . R 5 HOH E 11 2011 2011 HOH HOH . S 5 HOH F 1 2001 2001 HOH HOH . S 5 HOH F 2 2002 2002 HOH HOH . S 5 HOH F 3 2003 2003 HOH HOH . S 5 HOH F 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DVC . . . G 3 38.306 -1.352 19.324 1 11.8 ? C1 DVC 9 A 1 HETATM 2 C C2 DVC . . . G 3 38.189 -2.83 19.228 1 12.61 ? C2 DVC 9 A 1 HETATM 3 C C3 DVC . . . G 3 37.063 -3.302 18.265 1 11.69 ? C3 DVC 9 A 1 HETATM 4 N N3 DVC . . . G 3 37.311 -4.731 17.957 1 14.24 ? N3 DVC 9 A 1 HETATM 5 C C4 DVC . . . G 3 37.192 -2.528 16.945 1 13.94 ? C4 DVC 9 A 1 HETATM 6 O O4 DVC . . . G 3 38.333 -2.911 16.282 1 16.58 ? O4 DVC 9 A 1 HETATM 7 C C5 DVC . . . G 3 37.218 -1.006 17.233 1 13.76 ? C5 DVC 9 A 1 HETATM 8 O O5 DVC . . . G 3 38.301 -0.647 18.047 1 13.84 ? O5 DVC 9 A 1 HETATM 9 C C6 DVC . . . G 3 37.464 -0.172 15.923 1 22.98 ? C6 DVC 9 A 1 HETATM 10 C C3M DVC . . . G 3 35.725 -3.163 18.92 1 12.28 ? C3M DVC 9 A 1 HETATM 11 O O41 DVC . . . G 3 36.186 -2.833 16.065 1 17.34 ? O41 DVC 9 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #