data_1HIY # _model_server_result.job_id UrBdsb08xsM1HUwbma41VQ _model_server_result.datetime_utc '2024-10-18 23:34:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hiy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1156}' # _entry.id 1HIY # _exptl.entry_id 1HIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.216 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-DEOXY 3'-AMINO ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1HIY _cell.length_a 71.62 _cell.length_b 71.62 _cell.length_c 153.8 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 107.43 62.024739 51.266667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C10 H16 N6 O9 P2' _chem_comp.formula_weight 426.216 _chem_comp.id 3AN _chem_comp.mon_nstd_flag . _chem_comp.name "3'-DEOXY 3'-AMINO ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B 3AN doub 1 n n PB O2B 3AN sing 2 n n PB O3B 3AN sing 3 n n PB O3A 3AN sing 4 n n O2B HOB2 3AN sing 5 n n O3B HOB3 3AN sing 6 n n PA O1A 3AN sing 7 n n PA O2A 3AN doub 8 n n PA O3A 3AN sing 9 n n PA O5' 3AN sing 10 n n O1A HOA1 3AN sing 11 n n O5' C5' 3AN sing 12 n n C5' C4' 3AN sing 13 n n C5' "H5'1" 3AN sing 14 n n C5' "H5'2" 3AN sing 15 n n C4' O4' 3AN sing 16 n n C4' C3' 3AN sing 17 n n C4' "HC'4" 3AN sing 18 n n O4' C1' 3AN sing 19 n n C3' N3' 3AN sing 20 n n C3' C2' 3AN sing 21 n n C3' "HC'3" 3AN sing 22 n n N3' "H3'1" 3AN sing 23 n n N3' "H3'2" 3AN sing 24 n n C2' O2' 3AN sing 25 n n C2' C1' 3AN sing 26 n n C2' "HC'2" 3AN sing 27 n n O2' "HO'2" 3AN sing 28 n n C1' N9 3AN sing 29 n n C1' "HC'1" 3AN sing 30 n n N9 C8 3AN sing 31 n y N9 C4 3AN sing 32 n y C8 N7 3AN doub 33 n y C8 HC8 3AN sing 34 n n N7 C5 3AN sing 35 n y C5 C6 3AN doub 36 n y C5 C4 3AN sing 37 n y C6 N6 3AN sing 38 n n C6 N1 3AN sing 39 n y N6 HN61 3AN sing 40 n n N6 HN62 3AN sing 41 n n N1 C2 3AN doub 42 n y C2 N3 3AN sing 43 n y C2 HC2 3AN sing 44 n n N3 C4 3AN doub 45 n y # _atom_sites.entry_id 1HIY _atom_sites.fract_transf_matrix[1][1] 0.013962 _atom_sites.fract_transf_matrix[1][2] 0.008061 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 3AN A 1 1156 1156 3AN 3AN . E 2 3AN B 1 1356 1356 3AN 3AN . F 2 3AN C 1 1556 1556 3AN 3AN . G 3 HOH A 1 2001 2001 HOH HOH . G 3 HOH A 2 2002 2002 HOH HOH . G 3 HOH A 3 2003 2003 HOH HOH . G 3 HOH A 4 2004 2004 HOH HOH . G 3 HOH A 5 2005 2005 HOH HOH . G 3 HOH A 6 2006 2006 HOH HOH . G 3 HOH A 7 2007 2007 HOH HOH . G 3 HOH A 8 2008 2008 HOH HOH . G 3 HOH A 9 2009 2009 HOH HOH . G 3 HOH A 10 2010 2010 HOH HOH . G 3 HOH A 11 2011 2011 HOH HOH . G 3 HOH A 12 2012 2012 HOH HOH . G 3 HOH A 13 2013 2013 HOH HOH . G 3 HOH A 14 2014 2014 HOH HOH . H 3 HOH B 1 2001 2001 HOH HOH . H 3 HOH B 2 2002 2002 HOH HOH . H 3 HOH B 3 2003 2003 HOH HOH . H 3 HOH B 4 2004 2004 HOH HOH . H 3 HOH B 5 2005 2005 HOH HOH . H 3 HOH B 6 2006 2006 HOH HOH . H 3 HOH B 7 2007 2007 HOH HOH . H 3 HOH B 8 2008 2008 HOH HOH . H 3 HOH B 9 2009 2009 HOH HOH . H 3 HOH B 10 2010 2010 HOH HOH . H 3 HOH B 11 2011 2011 HOH HOH . H 3 HOH B 12 2012 2012 HOH HOH . H 3 HOH B 13 2013 2013 HOH HOH . H 3 HOH B 14 2014 2014 HOH HOH . H 3 HOH B 15 2015 2015 HOH HOH . H 3 HOH B 16 2016 2016 HOH HOH . H 3 HOH B 17 2017 2017 HOH HOH . H 3 HOH B 18 2018 2018 HOH HOH . H 3 HOH B 19 2019 2019 HOH HOH . I 3 HOH C 1 2001 2001 HOH HOH . I 3 HOH C 2 2002 2002 HOH HOH . I 3 HOH C 3 2003 2003 HOH HOH . I 3 HOH C 4 2004 2004 HOH HOH . I 3 HOH C 5 2005 2005 HOH HOH . I 3 HOH C 6 2006 2006 HOH HOH . I 3 HOH C 7 2007 2007 HOH HOH . I 3 HOH C 8 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB 3AN . . . D 2 66.558 29.032 0.274 0.95 27.5 ? PB 3AN 1156 A 1 HETATM 2 O O1B 3AN . . . D 2 67.284 29.822 1.278 0.95 31.37 ? O1B 3AN 1156 A 1 HETATM 3 O O2B 3AN . . . D 2 67.381 27.947 -0.362 0.95 33.25 ? O2B 3AN 1156 A 1 HETATM 4 O O3B 3AN . . . D 2 65.194 28.592 0.633 0.95 22.87 ? O3B 3AN 1156 A 1 HETATM 5 P PA 3AN . . . D 2 67.125 30.387 -2.214 0.95 27.9 ? PA 3AN 1156 A 1 HETATM 6 O O1A 3AN . . . D 2 67.561 29.014 -2.684 0.95 29.02 ? O1A 3AN 1156 A 1 HETATM 7 O O2A 3AN . . . D 2 66.349 31.295 -3.072 0.95 28.2 ? O2A 3AN 1156 A 1 HETATM 8 O O3A 3AN . . . D 2 66.315 30.15 -0.853 0.95 30.46 ? O3A 3AN 1156 A 1 HETATM 9 O O5' 3AN . . . D 2 68.381 31.217 -1.721 0.95 23.81 ? O5' 3AN 1156 A 1 HETATM 10 C C5' 3AN . . . D 2 68.216 32.592 -1.579 0.95 25.91 ? C5' 3AN 1156 A 1 HETATM 11 C C4' 3AN . . . D 2 68.572 33.206 -0.186 0.95 29.52 ? C4' 3AN 1156 A 1 HETATM 12 O O4' 3AN . . . D 2 68.977 34.575 -0.323 0.95 28.96 ? O4' 3AN 1156 A 1 HETATM 13 C C3' 3AN . . . D 2 67.324 33.281 0.674 0.95 28.05 ? C3' 3AN 1156 A 1 HETATM 14 N N3' 3AN . . . D 2 67.427 32.432 1.681 0.95 27.96 ? N3' 3AN 1156 A 1 HETATM 15 C C2' 3AN . . . D 2 67.161 34.753 1.05 0.95 29.74 ? C2' 3AN 1156 A 1 HETATM 16 O O2' 3AN . . . D 2 67.914 35.283 2.198 0.95 31.84 ? O2' 3AN 1156 A 1 HETATM 17 C C1' 3AN . . . D 2 67.807 35.407 -0.161 0.95 28.46 ? C1' 3AN 1156 A 1 HETATM 18 N N9 3AN . . . D 2 66.992 35.714 -1.408 0.95 28.1 ? N9 3AN 1156 A 1 HETATM 19 C C8 3AN . . . D 2 66.343 34.882 -2.323 0.95 25.49 ? C8 3AN 1156 A 1 HETATM 20 N N7 3AN . . . D 2 65.51 35.463 -3.123 0.95 24.79 ? N7 3AN 1156 A 1 HETATM 21 C C5 3AN . . . D 2 65.593 36.802 -2.742 0.95 27.46 ? C5 3AN 1156 A 1 HETATM 22 C C6 3AN . . . D 2 64.912 37.934 -3.219 0.95 30.6 ? C6 3AN 1156 A 1 HETATM 23 N N6 3AN . . . D 2 63.779 37.731 -3.862 0.95 33.3 ? N6 3AN 1156 A 1 HETATM 24 N N1 3AN . . . D 2 65.202 39.168 -2.683 0.95 33.86 ? N1 3AN 1156 A 1 HETATM 25 C C2 3AN . . . D 2 66.1 39.219 -1.662 0.95 35.72 ? C2 3AN 1156 A 1 HETATM 26 N N3 3AN . . . D 2 66.792 38.195 -1.075 0.95 34.66 ? N3 3AN 1156 A 1 HETATM 27 C C4 3AN . . . D 2 66.481 36.983 -1.7 0.95 29.47 ? C4 3AN 1156 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #