data_1HK3 # _model_server_result.job_id PLNWAMlvWE2LYUxUfZMxDA _model_server_result.datetime_utc '2024-10-13 08:18:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hk3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3003}' # _entry.id 1HK3 # _exptl.entry_id 1HK3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 776.87 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,3',5'-TETRAIODO-L-THYRONINE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.8 _cell.angle_gamma 90 _cell.entry_id 1HK3 _cell.length_a 59.328 _cell.length_b 89.284 _cell.length_c 60.526 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'C15 H11 I4 N O4' _chem_comp.formula_weight 776.87 _chem_comp.id T44 _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,3',5'-TETRAIODO-L-THYRONINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 T44 doub 290 n y C1 C6 T44 sing 291 n y C1 C7 T44 sing 292 n n C2 C3 T44 sing 293 n y C2 H1 T44 sing 294 n n C3 C4 T44 doub 295 n y C3 I3 T44 sing 296 n n C4 C5 T44 sing 297 n y C4 O4 T44 sing 298 n n C5 C6 T44 doub 299 n y C5 I5 T44 sing 300 n n C6 H6 T44 sing 301 n n C7 CA T44 sing 302 n n C7 H71 T44 sing 303 n n C7 H72 T44 sing 304 n n CA C T44 sing 305 n n CA N T44 sing 306 n n CA HA T44 sing 307 n n C O T44 doub 308 n n C OXT T44 sing 309 n n C1' C2' T44 doub 310 n y C1' C6' T44 sing 311 n y C1' O4 T44 sing 312 n n C2' C3' T44 sing 313 n y C2' H2' T44 sing 314 n n C3' C4' T44 doub 315 n y C3' I3' T44 sing 316 n n C4' C5' T44 sing 317 n y C4' O4' T44 sing 318 n n C5' C6' T44 doub 319 n y C5' I5' T44 sing 320 n n C6' H6' T44 sing 321 n n N H T44 sing 322 n n N H2 T44 sing 323 n n O4' HO4' T44 sing 324 n n OXT HXT T44 sing 325 n n # _atom_sites.entry_id 1HK3 _atom_sites.fract_transf_matrix[1][1] 0.016855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003214 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0112 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T44 A 1 3001 3001 T44 T44 . C 2 T44 A 1 3002 3002 T44 T44 . D 2 T44 A 1 3003 3003 T44 T44 . E 2 T44 A 1 3004 3004 T44 T44 . F 3 HOH A 1 2001 2001 HOH HOH . F 3 HOH A 2 2002 2002 HOH HOH . F 3 HOH A 3 2003 2003 HOH HOH . F 3 HOH A 4 2004 2004 HOH HOH . F 3 HOH A 5 2005 2005 HOH HOH . F 3 HOH A 6 2006 2006 HOH HOH . F 3 HOH A 7 2007 2007 HOH HOH . F 3 HOH A 8 2008 2008 HOH HOH . F 3 HOH A 9 2009 2009 HOH HOH . F 3 HOH A 10 2010 2010 HOH HOH . F 3 HOH A 11 2011 2011 HOH HOH . F 3 HOH A 12 2012 2012 HOH HOH . F 3 HOH A 13 2013 2013 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T44 . . . D 2 29.362 10.152 29.519 0.99 64.15 ? C1 T44 3003 A 1 HETATM 2 C C2 T44 . . . D 2 28.051 9.77 29.894 0.99 63.98 ? C2 T44 3003 A 1 HETATM 3 C C3 T44 . . . D 2 27.464 10.209 31.098 0.99 62.66 ? C3 T44 3003 A 1 HETATM 4 C C4 T44 . . . D 2 28.203 11.047 31.939 0.99 64.18 ? C4 T44 3003 A 1 HETATM 5 C C5 T44 . . . D 2 29.483 11.427 31.572 0.99 66.94 ? C5 T44 3003 A 1 HETATM 6 C C6 T44 . . . D 2 30.099 11.003 30.374 0.99 65.73 ? C6 T44 3003 A 1 HETATM 7 C C7 T44 . . . D 2 29.929 9.642 28.225 0.99 63.42 ? C7 T44 3003 A 1 HETATM 8 C CA T44 . . . D 2 29.944 8.138 28.12 0.99 65.59 ? CA T44 3003 A 1 HETATM 9 C C T44 . . . D 2 30.449 7.616 26.776 0.99 66.16 ? C T44 3003 A 1 HETATM 10 C C1' T44 . . . D 2 26.801 12.614 33.224 0.99 59.57 ? C1' T44 3003 A 1 HETATM 11 C C2' T44 . . . D 2 26.685 13.483 32.093 0.99 59.98 ? C2' T44 3003 A 1 HETATM 12 C C3' T44 . . . D 2 25.847 14.625 32.201 0.99 60.39 ? C3' T44 3003 A 1 HETATM 13 C C4' T44 . . . D 2 25.119 14.934 33.419 0.99 58.76 ? C4' T44 3003 A 1 HETATM 14 C C5' T44 . . . D 2 25.303 14.018 34.458 0.99 61.14 ? C5' T44 3003 A 1 HETATM 15 C C6' T44 . . . D 2 26.122 12.86 34.405 0.99 60.13 ? C6' T44 3003 A 1 HETATM 16 N N T44 . . . D 2 30.852 7.564 29.184 0.99 66 ? N T44 3003 A 1 HETATM 17 O O4 T44 . . . D 2 27.635 11.481 33.111 0.99 63.81 ? O4 T44 3003 A 1 HETATM 18 O O4' T44 . . . D 2 24.355 15.966 33.542 0.99 56.69 ? O4' T44 3003 A 1 HETATM 19 O O T44 . . . D 2 31.621 7.175 26.771 0.99 66.34 ? O T44 3003 A 1 HETATM 20 O OXT T44 . . . D 2 29.675 7.691 25.793 0.99 65.25 ? OXT T44 3003 A 1 HETATM 21 I I3 T44 . . . D 2 25.5 9.668 31.672 0.99 65.39 ? I3 T44 3003 A 1 HETATM 22 I I3' T44 . . . D 2 25.654 15.906 30.52 0.99 66.07 ? I3' T44 3003 A 1 HETATM 23 I I5 T44 . . . D 2 30.538 12.726 32.858 0.99 68.31 ? I5 T44 3003 A 1 HETATM 24 I I5' T44 . . . D 2 24.262 14.416 36.22 0.99 67.5 ? I5' T44 3003 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #