data_1HK5 # _model_server_result.job_id hpTmSjmIaXYVVDkEci5_ig _model_server_result.datetime_utc '2024-11-23 05:19:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hk5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1008}' # _entry.id 1HK5 # _exptl.entry_id 1HK5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 776.87 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,3',5'-TETRAIODO-L-THYRONINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.07 _cell.angle_gamma 90 _cell.entry_id 1HK5 _cell.length_a 190.14 _cell.length_b 39.04 _cell.length_c 96.23 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C15 H11 I4 N O4' _chem_comp.formula_weight 776.87 _chem_comp.id T44 _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,3',5'-TETRAIODO-L-THYRONINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 T44 doub 333 n y C1 C6 T44 sing 334 n y C1 C7 T44 sing 335 n n C2 C3 T44 sing 336 n y C2 H1 T44 sing 337 n n C3 C4 T44 doub 338 n y C3 I3 T44 sing 339 n n C4 C5 T44 sing 340 n y C4 O4 T44 sing 341 n n C5 C6 T44 doub 342 n y C5 I5 T44 sing 343 n n C6 H6 T44 sing 344 n n C7 CA T44 sing 345 n n C7 H71 T44 sing 346 n n C7 H72 T44 sing 347 n n CA C T44 sing 348 n n CA N T44 sing 349 n n CA HA T44 sing 350 n n C O T44 doub 351 n n C OXT T44 sing 352 n n C1' C2' T44 doub 353 n y C1' C6' T44 sing 354 n y C1' O4 T44 sing 355 n n C2' C3' T44 sing 356 n y C2' H2' T44 sing 357 n n C3' C4' T44 doub 358 n y C3' I3' T44 sing 359 n n C4' C5' T44 sing 360 n y C4' O4' T44 sing 361 n n C5' C6' T44 doub 362 n y C5' I5' T44 sing 363 n n C6' H6' T44 sing 364 n n N H T44 sing 365 n n N H2 T44 sing 366 n n O4' HO4' T44 sing 367 n n OXT HXT T44 sing 368 n n # _atom_sites.entry_id 1HK5 _atom_sites.fract_transf_matrix[1][1] 0.005259 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001416 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYR A 1 1001 1001 MYR MYR . C 2 MYR A 1 1002 1002 MYR MYR . D 2 MYR A 1 1003 1003 MYR MYR . E 2 MYR A 1 1004 1004 MYR MYR . F 2 MYR A 1 1005 1005 MYR MYR . G 2 MYR A 1 1006 1006 MYR MYR . H 2 MYR A 1 1007 1007 MYR MYR . I 3 T44 A 1 1008 1008 T44 T44 . J 4 HOH A 1 2001 2001 HOH HOH . J 4 HOH A 2 2002 2002 HOH HOH . J 4 HOH A 3 2003 2003 HOH HOH . J 4 HOH A 4 2004 2004 HOH HOH . J 4 HOH A 5 2005 2005 HOH HOH . J 4 HOH A 6 2006 2006 HOH HOH . J 4 HOH A 7 2007 2007 HOH HOH . J 4 HOH A 8 2008 2008 HOH HOH . J 4 HOH A 9 2009 2009 HOH HOH . J 4 HOH A 10 2010 2010 HOH HOH . J 4 HOH A 11 2011 2011 HOH HOH . J 4 HOH A 12 2012 2012 HOH HOH . J 4 HOH A 13 2013 2013 HOH HOH . J 4 HOH A 14 2014 2014 HOH HOH . J 4 HOH A 15 2015 2015 HOH HOH . J 4 HOH A 16 2016 2016 HOH HOH . J 4 HOH A 17 2017 2017 HOH HOH . J 4 HOH A 18 2018 2018 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T44 . . . I 3 20.133 10.609 28.666 0.28 38.23 ? C1 T44 1008 A 1 HETATM 2 C C2 T44 . . . I 3 21.327 10.184 28.059 0.28 39.01 ? C2 T44 1008 A 1 HETATM 3 C C3 T44 . . . I 3 21.556 10.325 26.67 0.28 38.07 ? C3 T44 1008 A 1 HETATM 4 C C4 T44 . . . I 3 20.557 10.913 25.839 0.28 36.32 ? C4 T44 1008 A 1 HETATM 5 C C5 T44 . . . I 3 19.385 11.327 26.433 0.28 35.68 ? C5 T44 1008 A 1 HETATM 6 C C6 T44 . . . I 3 19.136 11.194 27.827 0.28 36.74 ? C6 T44 1008 A 1 HETATM 7 C C7 T44 . . . I 3 19.946 10.441 30.181 0.28 38.94 ? C7 T44 1008 A 1 HETATM 8 C CA T44 . . . I 3 20.138 9.047 30.777 0.28 40.27 ? CA T44 1008 A 1 HETATM 9 C C T44 . . . I 3 19.863 8.921 32.316 0.28 40.45 ? C T44 1008 A 1 HETATM 10 C C1' T44 . . . I 3 21.448 12.21 23.949 0.28 30.13 ? C1' T44 1008 A 1 HETATM 11 C C2' T44 . . . I 3 21.611 12.234 22.56 0.28 28.9 ? C2' T44 1008 A 1 HETATM 12 C C3' T44 . . . I 3 22.253 13.349 21.979 0.28 27.66 ? C3' T44 1008 A 1 HETATM 13 C C4' T44 . . . I 3 22.757 14.491 22.733 0.28 27.67 ? C4' T44 1008 A 1 HETATM 14 C C5' T44 . . . I 3 22.547 14.377 24.124 0.28 28.43 ? C5' T44 1008 A 1 HETATM 15 C C6' T44 . . . I 3 21.912 13.288 24.757 0.28 29.64 ? C6' T44 1008 A 1 HETATM 16 N N T44 . . . I 3 19.212 8.091 30.063 0.28 41.67 ? N T44 1008 A 1 HETATM 17 O O4 T44 . . . I 3 20.797 11.058 24.473 0.28 33.85 ? O4 T44 1008 A 1 HETATM 18 O O4' T44 . . . I 3 23.351 15.51 22.152 0.28 26.47 ? O4' T44 1008 A 1 HETATM 19 O O T44 . . . I 3 18.824 9.444 32.756 0.28 39.46 ? O T44 1008 A 1 HETATM 20 O OXT T44 . . . I 3 20.702 8.307 32.998 0.28 40.01 ? OXT T44 1008 A 1 HETATM 21 I I3 T44 . . . I 3 23.347 9.679 25.846 0.28 42.78 ? I3 T44 1008 A 1 HETATM 22 I I3' T44 . . . I 3 22.501 13.393 19.913 0.28 25.29 ? I3' T44 1008 A 1 HETATM 23 I I5 T44 . . . I 3 17.904 12.194 25.238 0.28 31.9 ? I5 T44 1008 A 1 HETATM 24 I I5' T44 . . . I 3 23.215 15.928 25.331 0.28 31.23 ? I5' T44 1008 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 24 #