data_1HKB
#
_model_server_result.job_id            Jf6H0NSbBCzZ5MEyrSneog 
_model_server_result.datetime_utc      '2024-11-05 23:03:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hkb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":921}' 
#
_entry.id    1HKB 
#
_exptl.entry_id    1HKB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              260.136 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            6-O-phosphono-alpha-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92 
_cell.angle_gamma         90 
_cell.entry_id            1HKB 
_cell.length_a            83 
_cell.length_b            122 
_cell.length_c            123 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HKB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,O 1 1 
B,I,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LEU 242 A LEU 242 1_555 G CA CA . A CA 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? 
metalc ? metalc2 A O ILE 245 A ILE 245 1_555 G CA CA . A CA 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? 
metalc ? metalc3 A O VAL 248 A VAL 248 1_555 G CA CA . A CA 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc4 A O GLY 250 A GLY 250 1_555 G CA CA . A CA 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
metalc ? metalc5 A O MET 690 A MET 690 1_555 H CA CA . A CA 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc6 A O VAL 693 A VAL 693 1_555 H CA CA . A CA 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? 
metalc ? metalc7 A O VAL 696 A VAL 696 1_555 H CA CA . A CA 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc8 A O GLY 698 A GLY 698 1_555 H CA CA . A CA 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc9 B O LEU 242 B LEU 242 1_555 M CA CA . B CA 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? 
metalc ? metalc10 B O ILE 245 B ILE 245 1_555 M CA CA . B CA 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? 
metalc ? metalc11 B O VAL 248 B VAL 248 1_555 M CA CA . B CA 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? 
metalc ? metalc12 B O GLY 250 B GLY 250 1_555 M CA CA . B CA 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? 
metalc ? metalc13 B O MET 690 B MET 690 1_555 N CA CA . B CA 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? 
metalc ? metalc14 B O VAL 693 B VAL 693 1_555 N CA CA . B CA 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? 
metalc ? metalc15 B O VAL 696 B VAL 696 1_555 N CA CA . B CA 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc16 B O GLY 698 B GLY 698 1_555 N CA CA . B CA 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? 
#
_chem_comp.formula           'C6 H13 O9 P' 
_chem_comp.formula_weight    260.136 
_chem_comp.id                G6P 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              6-O-phosphono-alpha-D-glucopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     ALPHA-D-GLUCOSE-6-PHOSPHATE;6-O-phosphono-alpha-D-glucose;6-O-phosphono-D-glucose;6-O-phosphono-glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 G6P sing 107 n n 
C1 O1 G6P sing 108 n n 
C1 O5 G6P sing 109 n n 
C1 H1 G6P sing 110 n n 
C2 C3 G6P sing 111 n n 
C2 O2 G6P sing 112 n n 
C2 H2 G6P sing 113 n n 
C3 C4 G6P sing 114 n n 
C3 O3 G6P sing 115 n n 
C3 H3 G6P sing 116 n n 
C4 C5 G6P sing 117 n n 
C4 O4 G6P sing 118 n n 
C4 H4 G6P sing 119 n n 
C5 C6 G6P sing 120 n n 
C5 O5 G6P sing 121 n n 
C5 H5 G6P sing 122 n n 
C6 O6 G6P sing 123 n n 
C6 H61 G6P sing 124 n n 
C6 H62 G6P sing 125 n n 
O1 HO1 G6P sing 126 n n 
O2 HO2 G6P sing 127 n n 
O3 HO3 G6P sing 128 n n 
O4 HO4 G6P sing 129 n n 
O6 P G6P sing 130 n n 
P O1P G6P sing 131 n n 
P O2P G6P sing 132 n n 
P O3P G6P doub 133 n n 
O1P HO1P G6P sing 134 n n 
O2P HO2P G6P sing 135 n n 
#
_pdbx_chem_comp_identifier.comp_id            G6P 
_pdbx_chem_comp_identifier.identifier         a-D-Glcp6PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     1HKB 
_atom_sites.fract_transf_matrix[1][1]    0.012048 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000421 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008197 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008135 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BGC A 1 918 915 BGC BGC . 
D 3 G6P A 1 919 916 G6P G6P . 
E 2 BGC A 1 920 917 BGC BGC . 
F 3 G6P A 1 921 918 G6P G6P . 
G 4 CA A 1 922 919 CA CA . 
H 4 CA A 1 923 920 CA CA . 
I 2 BGC B 1 918 915 BGC BGC . 
J 3 G6P B 1 919 916 G6P G6P . 
K 2 BGC B 1 920 917 BGC BGC . 
L 3 G6P B 1 921 918 G6P G6P . 
M 4 CA B 1 922 919 CA CA . 
N 4 CA B 1 923 920 CA CA . 
O 5 HOH A 1 1006 1006 HOH HOH . 
O 5 HOH A 2 1007 1007 HOH HOH . 
O 5 HOH A 3 1010 1010 HOH HOH . 
O 5 HOH A 4 1011 1011 HOH HOH . 
O 5 HOH A 5 1013 1013 HOH HOH . 
O 5 HOH A 6 1015 1015 HOH HOH . 
O 5 HOH A 7 1018 1018 HOH HOH . 
O 5 HOH A 8 1019 1019 HOH HOH . 
O 5 HOH A 9 1025 1025 HOH HOH . 
O 5 HOH A 10 1027 1027 HOH HOH . 
O 5 HOH A 11 1029 1029 HOH HOH . 
O 5 HOH A 12 1034 1034 HOH HOH . 
O 5 HOH A 13 1037 1037 HOH HOH . 
O 5 HOH A 14 1038 1038 HOH HOH . 
O 5 HOH A 15 1040 1040 HOH HOH . 
O 5 HOH A 16 1041 1041 HOH HOH . 
O 5 HOH A 17 1043 1043 HOH HOH . 
O 5 HOH A 18 1044 1044 HOH HOH . 
O 5 HOH A 19 1051 1051 HOH HOH . 
O 5 HOH A 20 1054 1054 HOH HOH . 
O 5 HOH A 21 1056 1056 HOH HOH . 
O 5 HOH A 22 1060 1060 HOH HOH . 
O 5 HOH A 23 1062 1062 HOH HOH . 
O 5 HOH A 24 1063 1063 HOH HOH . 
O 5 HOH A 25 1064 1064 HOH HOH . 
O 5 HOH A 26 1067 1067 HOH HOH . 
O 5 HOH A 27 1071 1071 HOH HOH . 
O 5 HOH A 28 1072 1072 HOH HOH . 
O 5 HOH A 29 1076 1076 HOH HOH . 
O 5 HOH A 30 1077 1077 HOH HOH . 
O 5 HOH A 31 1081 1081 HOH HOH . 
O 5 HOH A 32 1082 1082 HOH HOH . 
O 5 HOH A 33 1083 1083 HOH HOH . 
O 5 HOH A 34 1086 1086 HOH HOH . 
O 5 HOH A 35 1087 1087 HOH HOH . 
O 5 HOH A 36 1088 1088 HOH HOH . 
O 5 HOH A 37 1089 1089 HOH HOH . 
O 5 HOH A 38 1090 1090 HOH HOH . 
O 5 HOH A 39 1091 1091 HOH HOH . 
O 5 HOH A 40 1093 1093 HOH HOH . 
O 5 HOH A 41 1094 1094 HOH HOH . 
O 5 HOH A 42 1095 1095 HOH HOH . 
O 5 HOH A 43 1096 1096 HOH HOH . 
O 5 HOH A 44 1097 1097 HOH HOH . 
O 5 HOH A 45 1099 1099 HOH HOH . 
O 5 HOH A 46 1100 1100 HOH HOH . 
O 5 HOH A 47 1101 1101 HOH HOH . 
O 5 HOH A 48 1102 1102 HOH HOH . 
O 5 HOH A 49 1103 1103 HOH HOH . 
O 5 HOH A 50 1105 1105 HOH HOH . 
O 5 HOH A 51 1111 1111 HOH HOH . 
O 5 HOH A 52 1113 1113 HOH HOH . 
O 5 HOH A 53 1115 1115 HOH HOH . 
O 5 HOH A 54 1117 1117 HOH HOH . 
O 5 HOH A 55 1128 1128 HOH HOH . 
O 5 HOH A 56 1145 1145 HOH HOH . 
P 5 HOH B 1 1005 1005 HOH HOH . 
P 5 HOH B 2 1008 1008 HOH HOH . 
P 5 HOH B 3 1009 1009 HOH HOH . 
P 5 HOH B 4 1012 1012 HOH HOH . 
P 5 HOH B 5 1014 1014 HOH HOH . 
P 5 HOH B 6 1016 1016 HOH HOH . 
P 5 HOH B 7 1017 1017 HOH HOH . 
P 5 HOH B 8 1020 1020 HOH HOH . 
P 5 HOH B 9 1021 1021 HOH HOH . 
P 5 HOH B 10 1022 1022 HOH HOH . 
P 5 HOH B 11 1023 1023 HOH HOH . 
P 5 HOH B 12 1024 1024 HOH HOH . 
P 5 HOH B 13 1026 1026 HOH HOH . 
P 5 HOH B 14 1028 1028 HOH HOH . 
P 5 HOH B 15 1030 1030 HOH HOH . 
P 5 HOH B 16 1031 1031 HOH HOH . 
P 5 HOH B 17 1032 1032 HOH HOH . 
P 5 HOH B 18 1033 1033 HOH HOH . 
P 5 HOH B 19 1035 1035 HOH HOH . 
P 5 HOH B 20 1036 1036 HOH HOH . 
P 5 HOH B 21 1039 1039 HOH HOH . 
P 5 HOH B 22 1042 1042 HOH HOH . 
P 5 HOH B 23 1045 1045 HOH HOH . 
P 5 HOH B 24 1046 1046 HOH HOH . 
P 5 HOH B 25 1047 1047 HOH HOH . 
P 5 HOH B 26 1048 1048 HOH HOH . 
P 5 HOH B 27 1049 1049 HOH HOH . 
P 5 HOH B 28 1050 1050 HOH HOH . 
P 5 HOH B 29 1052 1052 HOH HOH . 
P 5 HOH B 30 1053 1053 HOH HOH . 
P 5 HOH B 31 1055 1055 HOH HOH . 
P 5 HOH B 32 1057 1057 HOH HOH . 
P 5 HOH B 33 1058 1058 HOH HOH . 
P 5 HOH B 34 1059 1059 HOH HOH . 
P 5 HOH B 35 1061 1061 HOH HOH . 
P 5 HOH B 36 1065 1065 HOH HOH . 
P 5 HOH B 37 1066 1066 HOH HOH . 
P 5 HOH B 38 1068 1068 HOH HOH . 
P 5 HOH B 39 1069 1069 HOH HOH . 
P 5 HOH B 40 1070 1070 HOH HOH . 
P 5 HOH B 41 1073 1073 HOH HOH . 
P 5 HOH B 42 1074 1074 HOH HOH . 
P 5 HOH B 43 1075 1075 HOH HOH . 
P 5 HOH B 44 1078 1078 HOH HOH . 
P 5 HOH B 45 1079 1079 HOH HOH . 
P 5 HOH B 46 1080 1080 HOH HOH . 
P 5 HOH B 47 1084 1084 HOH HOH . 
P 5 HOH B 48 1085 1085 HOH HOH . 
P 5 HOH B 49 1092 1092 HOH HOH . 
P 5 HOH B 50 1098 1098 HOH HOH . 
P 5 HOH B 51 1104 1104 HOH HOH . 
P 5 HOH B 52 1106 1106 HOH HOH . 
P 5 HOH B 53 1107 1107 HOH HOH . 
P 5 HOH B 54 1108 1108 HOH HOH . 
P 5 HOH B 55 1109 1109 HOH HOH . 
P 5 HOH B 56 1110 1110 HOH HOH . 
P 5 HOH B 57 1112 1112 HOH HOH . 
P 5 HOH B 58 1114 1114 HOH HOH . 
P 5 HOH B 59 1116 1116 HOH HOH . 
P 5 HOH B 60 1118 1118 HOH HOH . 
P 5 HOH B 61 1119 1119 HOH HOH . 
P 5 HOH B 62 1120 1120 HOH HOH . 
P 5 HOH B 63 1121 1121 HOH HOH . 
P 5 HOH B 64 1122 1122 HOH HOH . 
P 5 HOH B 65 1123 1123 HOH HOH . 
P 5 HOH B 66 1124 1124 HOH HOH . 
P 5 HOH B 67 1125 1125 HOH HOH . 
P 5 HOH B 68 1126 1126 HOH HOH . 
P 5 HOH B 69 1127 1127 HOH HOH . 
P 5 HOH B 70 1129 1129 HOH HOH . 
P 5 HOH B 71 1130 1130 HOH HOH . 
P 5 HOH B 72 1131 1131 HOH HOH . 
P 5 HOH B 73 1132 1132 HOH HOH . 
P 5 HOH B 74 1133 1133 HOH HOH . 
P 5 HOH B 75 1134 1134 HOH HOH . 
P 5 HOH B 76 1135 1135 HOH HOH . 
P 5 HOH B 77 1136 1136 HOH HOH . 
P 5 HOH B 78 1137 1137 HOH HOH . 
P 5 HOH B 79 1138 1138 HOH HOH . 
P 5 HOH B 80 1139 1139 HOH HOH . 
P 5 HOH B 81 1140 1140 HOH HOH . 
P 5 HOH B 82 1141 1141 HOH HOH . 
P 5 HOH B 83 1142 1142 HOH HOH . 
P 5 HOH B 84 1143 1143 HOH HOH . 
P 5 HOH B 85 1144 1144 HOH HOH . 
P 5 HOH B 86 1146 1146 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 G6P . . . L 3 64.123 4.212 7.693 1 37.6 ? C1 G6P 921 B 1 
HETATM 2 C C2 G6P . . . L 3 63.325 3.195 6.842 1 37.08 ? C2 G6P 921 B 1 
HETATM 3 C C3 G6P . . . L 3 61.914 3.041 7.397 1 37.31 ? C3 G6P 921 B 1 
HETATM 4 C C4 G6P . . . L 3 62.02 2.641 8.85 1 30.91 ? C4 G6P 921 B 1 
HETATM 5 C C5 G6P . . . L 3 62.756 3.741 9.596 1 28.64 ? C5 G6P 921 B 1 
HETATM 6 C C6 G6P . . . L 3 62.868 3.398 11.044 1 13.44 ? C6 G6P 921 B 1 
HETATM 7 O O1 G6P . . . L 3 65.45 4.222 7.297 1 45.61 ? O1 G6P 921 B 1 
HETATM 8 O O2 G6P . . . L 3 63.245 3.632 5.495 1 36.1 ? O2 G6P 921 B 1 
HETATM 9 O O3 G6P . . . L 3 61.202 2.051 6.671 1 39.65 ? O3 G6P 921 B 1 
HETATM 10 O O4 G6P . . . L 3 60.729 2.45 9.398 1 51.51 ? O4 G6P 921 B 1 
HETATM 11 O O5 G6P . . . L 3 64.096 3.851 9.081 1 33.21 ? O5 G6P 921 B 1 
HETATM 12 O O6 G6P . . . L 3 63.153 2.029 11.161 1 17.94 ? O6 G6P 921 B 1 
HETATM 13 P P G6P . . . L 3 63.602 1.407 12.543 1 24.8 ? P G6P 921 B 1 
HETATM 14 O O1P G6P . . . L 3 62.547 1.475 13.575 1 27.49 ? O1P G6P 921 B 1 
HETATM 15 O O2P G6P . . . L 3 64.81 2.072 13.094 1 23.49 ? O2P G6P 921 B 1 
HETATM 16 O O3P G6P . . . L 3 63.927 -0.021 12.399 1 27.39 ? O3P G6P 921 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           214 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#