data_1HKU # _model_server_result.job_id sSEmP2REIxmOltjgDBaoJQ _model_server_result.datetime_utc '2024-11-24 23:15:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hku # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 1HKU # _exptl.entry_id 1HKU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1HKU _cell.length_a 88.705 _cell.length_b 88.705 _cell.length_c 163.014 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HKU _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 44.3525 76.820783 54.338 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 34 A ASP 26 1_555 A N CSO 35 A CSO 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C CSO 35 A CSO 27 1_555 A N THR 36 A THR 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 268 n n PA O2A NAD sing 269 n n PA O5B NAD sing 270 n n PA O3 NAD sing 271 n n O2A HOA2 NAD sing 272 n n O5B C5B NAD sing 273 n n C5B C4B NAD sing 274 n n C5B H51A NAD sing 275 n n C5B H52A NAD sing 276 n n C4B O4B NAD sing 277 n n C4B C3B NAD sing 278 n n C4B H4B NAD sing 279 n n O4B C1B NAD sing 280 n n C3B O3B NAD sing 281 n n C3B C2B NAD sing 282 n n C3B H3B NAD sing 283 n n O3B HO3A NAD sing 284 n n C2B O2B NAD sing 285 n n C2B C1B NAD sing 286 n n C2B H2B NAD sing 287 n n O2B HO2A NAD sing 288 n n C1B N9A NAD sing 289 n n C1B H1B NAD sing 290 n n N9A C8A NAD sing 291 n y N9A C4A NAD sing 292 n y C8A N7A NAD doub 293 n y C8A H8A NAD sing 294 n n N7A C5A NAD sing 295 n y C5A C6A NAD sing 296 n y C5A C4A NAD doub 297 n y C6A N6A NAD sing 298 n n C6A N1A NAD doub 299 n y N6A H61A NAD sing 300 n n N6A H62A NAD sing 301 n n N1A C2A NAD sing 302 n y C2A N3A NAD doub 303 n y C2A H2A NAD sing 304 n n N3A C4A NAD sing 305 n y O3 PN NAD sing 306 n n PN O1N NAD doub 307 n n PN O2N NAD sing 308 n n PN O5D NAD sing 309 n n O5D C5D NAD sing 310 n n C5D C4D NAD sing 311 n n C5D H51N NAD sing 312 n n C5D H52N NAD sing 313 n n C4D O4D NAD sing 314 n n C4D C3D NAD sing 315 n n C4D H4D NAD sing 316 n n O4D C1D NAD sing 317 n n C3D O3D NAD sing 318 n n C3D C2D NAD sing 319 n n C3D H3D NAD sing 320 n n O3D HO3N NAD sing 321 n n C2D O2D NAD sing 322 n n C2D C1D NAD sing 323 n n C2D H2D NAD sing 324 n n O2D HO2N NAD sing 325 n n C1D N1N NAD sing 326 n n C1D H1D NAD sing 327 n n N1N C2N NAD sing 328 n y N1N C6N NAD doub 329 n y C2N C3N NAD doub 330 n y C2N H2N NAD sing 331 n n C3N C7N NAD sing 332 n n C3N C4N NAD sing 333 n y C7N O7N NAD doub 334 n n C7N N7N NAD sing 335 n n N7N H71N NAD sing 336 n n N7N H72N NAD sing 337 n n C4N C5N NAD doub 338 n y C4N H4N NAD sing 339 n n C5N C6N NAD sing 340 n y C5N H5N NAD sing 341 n n C6N H6N NAD sing 342 n n # _atom_sites.entry_id 1HKU _atom_sites.fract_transf_matrix[1][1] 0.011273 _atom_sites.fract_transf_matrix[1][2] 0.006509 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006134 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 600 600 NAD NAD . C 3 GOL A 1 700 700 GOL GOL . D 4 FMT A 1 800 800 FMT FMT . E 4 FMT A 1 801 801 FMT FMT . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . F 5 HOH A 11 2011 2011 HOH HOH . F 5 HOH A 12 2012 2012 HOH HOH . F 5 HOH A 13 2013 2013 HOH HOH . F 5 HOH A 14 2014 2014 HOH HOH . F 5 HOH A 15 2015 2015 HOH HOH . F 5 HOH A 16 2016 2016 HOH HOH . F 5 HOH A 17 2017 2017 HOH HOH . F 5 HOH A 18 2018 2018 HOH HOH . F 5 HOH A 19 2019 2019 HOH HOH . F 5 HOH A 20 2020 2020 HOH HOH . F 5 HOH A 21 2021 2021 HOH HOH . F 5 HOH A 22 2022 2022 HOH HOH . F 5 HOH A 23 2023 2023 HOH HOH . F 5 HOH A 24 2024 2024 HOH HOH . F 5 HOH A 25 2025 2025 HOH HOH . F 5 HOH A 26 2026 2026 HOH HOH . F 5 HOH A 27 2027 2027 HOH HOH . F 5 HOH A 28 2028 2028 HOH HOH . F 5 HOH A 29 2029 2029 HOH HOH . F 5 HOH A 30 2030 2030 HOH HOH . F 5 HOH A 31 2031 2031 HOH HOH . F 5 HOH A 32 2032 2032 HOH HOH . F 5 HOH A 33 2033 2033 HOH HOH . F 5 HOH A 34 2034 2034 HOH HOH . F 5 HOH A 35 2035 2035 HOH HOH . F 5 HOH A 36 2036 2036 HOH HOH . F 5 HOH A 37 2037 2037 HOH HOH . F 5 HOH A 38 2038 2038 HOH HOH . F 5 HOH A 39 2039 2039 HOH HOH . F 5 HOH A 40 2040 2040 HOH HOH . F 5 HOH A 41 2041 2041 HOH HOH . F 5 HOH A 42 2042 2042 HOH HOH . F 5 HOH A 43 2043 2043 HOH HOH . F 5 HOH A 44 2044 2044 HOH HOH . F 5 HOH A 45 2045 2045 HOH HOH . F 5 HOH A 46 2046 2046 HOH HOH . F 5 HOH A 47 2047 2047 HOH HOH . F 5 HOH A 48 2048 2048 HOH HOH . F 5 HOH A 49 2049 2049 HOH HOH . F 5 HOH A 50 2050 2050 HOH HOH . F 5 HOH A 51 2051 2051 HOH HOH . F 5 HOH A 52 2052 2052 HOH HOH . F 5 HOH A 53 2053 2053 HOH HOH . F 5 HOH A 54 2054 2054 HOH HOH . F 5 HOH A 55 2055 2055 HOH HOH . F 5 HOH A 56 2056 2056 HOH HOH . F 5 HOH A 57 2057 2057 HOH HOH . F 5 HOH A 58 2058 2058 HOH HOH . F 5 HOH A 59 2059 2059 HOH HOH . F 5 HOH A 60 2060 2060 HOH HOH . F 5 HOH A 61 2061 2061 HOH HOH . F 5 HOH A 62 2062 2062 HOH HOH . F 5 HOH A 63 2063 2063 HOH HOH . F 5 HOH A 64 2064 2064 HOH HOH . F 5 HOH A 65 2065 2065 HOH HOH . F 5 HOH A 66 2066 2066 HOH HOH . F 5 HOH A 67 2067 2067 HOH HOH . F 5 HOH A 68 2068 2068 HOH HOH . F 5 HOH A 69 2069 2069 HOH HOH . F 5 HOH A 70 2070 2070 HOH HOH . F 5 HOH A 71 2071 2071 HOH HOH . F 5 HOH A 72 2072 2072 HOH HOH . F 5 HOH A 73 2073 2073 HOH HOH . F 5 HOH A 74 2074 2074 HOH HOH . F 5 HOH A 75 2075 2075 HOH HOH . F 5 HOH A 76 2076 2076 HOH HOH . F 5 HOH A 77 2077 2077 HOH HOH . F 5 HOH A 78 2078 2078 HOH HOH . F 5 HOH A 79 2079 2079 HOH HOH . F 5 HOH A 80 2080 2080 HOH HOH . F 5 HOH A 81 2081 2081 HOH HOH . F 5 HOH A 82 2082 2082 HOH HOH . F 5 HOH A 83 2083 2083 HOH HOH . F 5 HOH A 84 2084 2084 HOH HOH . F 5 HOH A 85 2085 2085 HOH HOH . F 5 HOH A 86 2086 2086 HOH HOH . F 5 HOH A 87 2087 2087 HOH HOH . F 5 HOH A 88 2088 2088 HOH HOH . F 5 HOH A 89 2089 2089 HOH HOH . F 5 HOH A 90 2090 2090 HOH HOH . F 5 HOH A 91 2091 2091 HOH HOH . F 5 HOH A 92 2092 2092 HOH HOH . F 5 HOH A 93 2093 2093 HOH HOH . F 5 HOH A 94 2094 2094 HOH HOH . F 5 HOH A 95 2095 2095 HOH HOH . F 5 HOH A 96 2096 2096 HOH HOH . F 5 HOH A 97 2097 2097 HOH HOH . F 5 HOH A 98 2098 2098 HOH HOH . F 5 HOH A 99 2099 2099 HOH HOH . F 5 HOH A 100 2100 2100 HOH HOH . F 5 HOH A 101 2101 2101 HOH HOH . F 5 HOH A 102 2102 2102 HOH HOH . F 5 HOH A 103 2103 2103 HOH HOH . F 5 HOH A 104 2104 2104 HOH HOH . F 5 HOH A 105 2105 2105 HOH HOH . F 5 HOH A 106 2106 2106 HOH HOH . F 5 HOH A 107 2107 2107 HOH HOH . F 5 HOH A 108 2108 2108 HOH HOH . F 5 HOH A 109 2109 2109 HOH HOH . F 5 HOH A 110 2110 2110 HOH HOH . F 5 HOH A 111 2111 2111 HOH HOH . F 5 HOH A 112 2112 2112 HOH HOH . F 5 HOH A 113 2113 2113 HOH HOH . F 5 HOH A 114 2114 2114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 3.983 24.876 26.461 1 36.55 ? PA NAD 600 A 1 HETATM 2 O O1A NAD . . . B 2 2.72 24.135 26.347 1 39.71 ? O1A NAD 600 A 1 HETATM 3 O O2A NAD . . . B 2 4.9 25.451 25.414 1 36.47 ? O2A NAD 600 A 1 HETATM 4 O O5B NAD . . . B 2 4.164 25.549 27.89 1 30.33 ? O5B NAD 600 A 1 HETATM 5 C C5B NAD . . . B 2 3.197 25.516 28.982 1 34.42 ? C5B NAD 600 A 1 HETATM 6 C C4B NAD . . . B 2 3.973 25.106 30.215 1 35.65 ? C4B NAD 600 A 1 HETATM 7 O O4B NAD . . . B 2 2.997 25.13 31.319 1 38.58 ? O4B NAD 600 A 1 HETATM 8 C C3B NAD . . . B 2 4.531 23.625 30.245 1 36.81 ? C3B NAD 600 A 1 HETATM 9 O O3B NAD . . . B 2 5.99 23.61 30.412 1 37.78 ? O3B NAD 600 A 1 HETATM 10 C C2B NAD . . . B 2 3.797 22.944 31.392 1 37.39 ? C2B NAD 600 A 1 HETATM 11 O O2B NAD . . . B 2 4.45 21.923 32.053 1 40.12 ? O2B NAD 600 A 1 HETATM 12 C C1B NAD . . . B 2 3.446 24.168 32.228 1 38.05 ? C1B NAD 600 A 1 HETATM 13 N N9A NAD . . . B 2 2.353 23.924 33.142 1 39.34 ? N9A NAD 600 A 1 HETATM 14 C C8A NAD . . . B 2 1.156 23.239 33.046 1 38.25 ? C8A NAD 600 A 1 HETATM 15 N N7A NAD . . . B 2 0.441 23.269 34.159 1 39.75 ? N7A NAD 600 A 1 HETATM 16 C C5A NAD . . . B 2 1.142 23.986 35.056 1 39.02 ? C5A NAD 600 A 1 HETATM 17 C C6A NAD . . . B 2 0.889 24.374 36.455 1 39.96 ? C6A NAD 600 A 1 HETATM 18 N N6A NAD . . . B 2 -0.196 24.032 37.119 1 40.93 ? N6A NAD 600 A 1 HETATM 19 N N1A NAD . . . B 2 1.895 25.143 37.03 1 40.76 ? N1A NAD 600 A 1 HETATM 20 C C2A NAD . . . B 2 3.027 25.533 36.42 1 40.13 ? C2A NAD 600 A 1 HETATM 21 N N3A NAD . . . B 2 3.315 25.189 35.096 1 39.43 ? N3A NAD 600 A 1 HETATM 22 C C4A NAD . . . B 2 2.34 24.412 34.449 1 40.18 ? C4A NAD 600 A 1 HETATM 23 O O3 NAD . . . B 2 3.128 26.234 26.07 1 34.25 ? O3 NAD 600 A 1 HETATM 24 P PN NAD . . . B 2 3.666 27.683 25.518 1 38.24 ? PN NAD 600 A 1 HETATM 25 O O1N NAD . . . B 2 4.299 28.574 26.499 1 36.85 ? O1N NAD 600 A 1 HETATM 26 O O2N NAD . . . B 2 3.111 28.029 24.191 1 32.03 ? O2N NAD 600 A 1 HETATM 27 O O5D NAD . . . B 2 2.343 28.302 26.24 1 36.57 ? O5D NAD 600 A 1 HETATM 28 C C5D NAD . . . B 2 0.999 27.926 25.805 1 46.94 ? C5D NAD 600 A 1 HETATM 29 C C4D NAD . . . B 2 -0.069 28.492 26.666 1 46.79 ? C4D NAD 600 A 1 HETATM 30 O O4D NAD . . . B 2 -0.065 29.986 26.663 1 45.59 ? O4D NAD 600 A 1 HETATM 31 C C3D NAD . . . B 2 -1.462 28.065 26.136 1 49.62 ? C3D NAD 600 A 1 HETATM 32 O O3D NAD . . . B 2 -1.933 26.888 26.774 1 53.55 ? O3D NAD 600 A 1 HETATM 33 C C2D NAD . . . B 2 -2.34 29.293 26.433 1 49.55 ? C2D NAD 600 A 1 HETATM 34 O O2D NAD . . . B 2 -2.961 29.191 27.69 1 54.1 ? O2D NAD 600 A 1 HETATM 35 C C1D NAD . . . B 2 -1.361 30.519 26.251 1 44.32 ? C1D NAD 600 A 1 HETATM 36 N N1N NAD . . . B 2 -1.398 31.021 24.822 1 38.36 ? N1N NAD 600 A 1 HETATM 37 C C2N NAD . . . B 2 -2.092 32.279 24.67 1 36.08 ? C2N NAD 600 A 1 HETATM 38 C C3N NAD . . . B 2 -1.731 33.281 23.875 1 31.94 ? C3N NAD 600 A 1 HETATM 39 C C7N NAD . . . B 2 -2.55 34.578 23.766 1 29.89 ? C7N NAD 600 A 1 HETATM 40 O O7N NAD . . . B 2 -2.828 34.985 22.626 1 30.57 ? O7N NAD 600 A 1 HETATM 41 N N7N NAD . . . B 2 -2.907 35.258 24.861 1 25.83 ? N7N NAD 600 A 1 HETATM 42 C C4N NAD . . . B 2 -0.497 33.219 23.015 1 33.66 ? C4N NAD 600 A 1 HETATM 43 C C5N NAD . . . B 2 0.277 31.935 23.174 1 37.35 ? C5N NAD 600 A 1 HETATM 44 C C6N NAD . . . B 2 -0.175 30.921 24.046 1 38.64 ? C6N NAD 600 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 389 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #