data_1HKX # _model_server_result.job_id fT0A25TiTv2YKy9T3q-d9g _model_server_result.datetime_utc '2024-10-16 12:30:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hkx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1475}' # _entry.id 1HKX # _exptl.entry_id 1HKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.91 _cell.angle_gamma 90 _cell.entry_id 1HKX _cell.length_a 147.946 _cell.length_b 118.043 _cell.length_c 157.82 _cell.Z_PDB 56 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 83 n n S1 HS1 DTT sing 84 n n C1 C2 DTT sing 85 n n C1 H11 DTT sing 86 n n C1 H12 DTT sing 87 n n C2 O2 DTT sing 88 n n C2 C3 DTT sing 89 n n C2 H2 DTT sing 90 n n O2 HO2 DTT sing 91 n n C3 O3 DTT sing 92 n n C3 C4 DTT sing 93 n n C3 H3 DTT sing 94 n n O3 HO3 DTT sing 95 n n C4 S4 DTT sing 96 n n C4 H41 DTT sing 97 n n C4 H42 DTT sing 98 n n S4 HS2 DTT sing 99 n n # _atom_sites.entry_id 1HKX _atom_sites.fract_transf_matrix[1][1] 0.006759 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002582 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 2 DTT A 1 1475 1475 DTT DTT . P 3 CL A 1 1476 1476 CL CL . Q 4 TBR A 1 2000 2000 TBR TBR . R 3 CL B 1 1475 1475 CL CL . S 3 CL C 1 1475 1475 CL CL . T 3 CL D 1 1475 1475 CL CL . U 3 CL E 1 1475 1475 CL CL . V 3 CL F 1 1475 1475 CL CL . W 3 CL G 1 1475 1475 CL CL . X 3 CL H 1 1475 1475 CL CL . Y 3 CL I 1 1475 1475 CL CL . Z 3 CL J 1 1475 1475 CL CL . AA 3 CL K 1 1475 1475 CL CL . BA 3 CL L 1 1475 1475 CL CL . CA 3 CL M 1 1475 1475 CL CL . DA 3 CL N 1 1475 1475 CL CL . EA 5 HOH A 1 2001 2001 HOH HOH . EA 5 HOH A 2 2002 2002 HOH HOH . EA 5 HOH A 3 2003 2003 HOH HOH . EA 5 HOH A 4 2004 2004 HOH HOH . EA 5 HOH A 5 2005 2005 HOH HOH . EA 5 HOH A 6 2006 2006 HOH HOH . FA 5 HOH B 1 2001 2001 HOH HOH . FA 5 HOH B 2 2002 2002 HOH HOH . FA 5 HOH B 3 2003 2003 HOH HOH . FA 5 HOH B 4 2004 2004 HOH HOH . GA 5 HOH C 1 2001 2001 HOH HOH . GA 5 HOH C 2 2002 2002 HOH HOH . GA 5 HOH C 3 2003 2003 HOH HOH . GA 5 HOH C 4 2004 2004 HOH HOH . GA 5 HOH C 5 2005 2005 HOH HOH . HA 5 HOH D 1 2001 2001 HOH HOH . HA 5 HOH D 2 2002 2002 HOH HOH . HA 5 HOH D 3 2003 2003 HOH HOH . HA 5 HOH D 4 2004 2004 HOH HOH . IA 5 HOH E 1 2001 2001 HOH HOH . IA 5 HOH E 2 2002 2002 HOH HOH . IA 5 HOH E 3 2003 2003 HOH HOH . IA 5 HOH E 4 2004 2004 HOH HOH . JA 5 HOH F 1 2001 2001 HOH HOH . JA 5 HOH F 2 2002 2002 HOH HOH . JA 5 HOH F 3 2003 2003 HOH HOH . JA 5 HOH F 4 2004 2004 HOH HOH . KA 5 HOH G 1 2001 2001 HOH HOH . KA 5 HOH G 2 2002 2002 HOH HOH . KA 5 HOH G 3 2003 2003 HOH HOH . KA 5 HOH G 4 2004 2004 HOH HOH . KA 5 HOH G 5 2005 2005 HOH HOH . KA 5 HOH G 6 2006 2006 HOH HOH . KA 5 HOH G 7 2007 2007 HOH HOH . LA 5 HOH H 1 2001 2001 HOH HOH . LA 5 HOH H 2 2002 2002 HOH HOH . LA 5 HOH H 3 2003 2003 HOH HOH . LA 5 HOH H 4 2004 2004 HOH HOH . LA 5 HOH H 5 2005 2005 HOH HOH . LA 5 HOH H 6 2006 2006 HOH HOH . MA 5 HOH I 1 2001 2001 HOH HOH . MA 5 HOH I 2 2002 2002 HOH HOH . NA 5 HOH J 1 2001 2001 HOH HOH . NA 5 HOH J 2 2002 2002 HOH HOH . NA 5 HOH J 3 2003 2003 HOH HOH . OA 5 HOH K 1 2001 2001 HOH HOH . OA 5 HOH K 2 2002 2002 HOH HOH . OA 5 HOH K 3 2003 2003 HOH HOH . OA 5 HOH K 4 2004 2004 HOH HOH . PA 5 HOH L 1 2001 2001 HOH HOH . PA 5 HOH L 2 2002 2002 HOH HOH . PA 5 HOH L 3 2003 2003 HOH HOH . PA 5 HOH L 4 2004 2004 HOH HOH . PA 5 HOH L 5 2005 2005 HOH HOH . QA 5 HOH M 1 2001 2001 HOH HOH . QA 5 HOH M 2 2002 2002 HOH HOH . QA 5 HOH M 3 2003 2003 HOH HOH . QA 5 HOH M 4 2004 2004 HOH HOH . RA 5 HOH N 1 2001 2001 HOH HOH . RA 5 HOH N 2 2002 2002 HOH HOH . RA 5 HOH N 3 2003 2003 HOH HOH . RA 5 HOH N 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . O 2 1.745 -5.529 31.187 1 72.28 ? S1 DTT 1475 A 1 HETATM 2 C C1 DTT . . . O 2 1.092 -4.09 30.36 1 77.37 ? C1 DTT 1475 A 1 HETATM 3 C C2 DTT . . . O 2 -0.088 -4.669 29.653 1 75.45 ? C2 DTT 1475 A 1 HETATM 4 O O2 DTT . . . O 2 -0.848 -4.849 30.431 1 77.65 ? O2 DTT 1475 A 1 HETATM 5 C C3 DTT . . . O 2 -0.48 -3.869 28.463 1 75.28 ? C3 DTT 1475 A 1 HETATM 6 O O3 DTT . . . O 2 -0.36 -2.57 28.856 1 73.54 ? O3 DTT 1475 A 1 HETATM 7 C C4 DTT . . . O 2 -1.801 -3.9 27.925 1 74.57 ? C4 DTT 1475 A 1 HETATM 8 S S4 DTT . . . O 2 -1.615 -5.436 27.184 1 79.5 ? S4 DTT 1475 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 8 #