data_1HL3
#
_model_server_result.job_id            OyAKYSFb7yzj-unHKxDWDg 
_model_server_result.datetime_utc      '2024-11-02 11:35:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hl3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":600}' 
#
_entry.id    1HL3 
#
_exptl.entry_id    1HL3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1HL3 
_cell.length_a            84.811 
_cell.length_b            84.811 
_cell.length_c            159.719 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HL3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 42.4055 73.448481 53.239667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     1HL3 
_atom_sites.fract_transf_matrix[1][1]    0.011791 
_atom_sites.fract_transf_matrix[1][2]    0.006807 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013615 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006261 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAD A 1 600 600 NAD NAD . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
D 4 HOH A 5 2005 2005 HOH HOH . 
D 4 HOH A 6 2006 2006 HOH HOH . 
D 4 HOH A 7 2007 2007 HOH HOH . 
D 4 HOH A 8 2008 2008 HOH HOH . 
D 4 HOH A 9 2009 2009 HOH HOH . 
D 4 HOH A 10 2010 2010 HOH HOH . 
D 4 HOH A 11 2011 2011 HOH HOH . 
D 4 HOH A 12 2012 2012 HOH HOH . 
D 4 HOH A 13 2013 2013 HOH HOH . 
D 4 HOH A 14 2014 2014 HOH HOH . 
D 4 HOH A 15 2015 2015 HOH HOH . 
D 4 HOH A 16 2016 2016 HOH HOH . 
D 4 HOH A 17 2017 2017 HOH HOH . 
D 4 HOH A 18 2018 2018 HOH HOH . 
D 4 HOH A 19 2019 2019 HOH HOH . 
D 4 HOH A 20 2020 2020 HOH HOH . 
D 4 HOH A 21 2021 2021 HOH HOH . 
D 4 HOH A 22 2022 2022 HOH HOH . 
D 4 HOH A 23 2023 2023 HOH HOH . 
D 4 HOH A 24 2024 2024 HOH HOH . 
D 4 HOH A 25 2025 2025 HOH HOH . 
D 4 HOH A 26 2026 2026 HOH HOH . 
D 4 HOH A 27 2027 2027 HOH HOH . 
D 4 HOH A 28 2028 2028 HOH HOH . 
D 4 HOH A 29 2029 2029 HOH HOH . 
D 4 HOH A 30 2030 2030 HOH HOH . 
D 4 HOH A 31 2031 2031 HOH HOH . 
D 4 HOH A 32 2032 2032 HOH HOH . 
D 4 HOH A 33 2033 2033 HOH HOH . 
D 4 HOH A 34 2034 2034 HOH HOH . 
D 4 HOH A 35 2035 2035 HOH HOH . 
D 4 HOH A 36 2036 2036 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . C 3 2.782 23.375 26.209 1 52.87 ? PA NAD 600 A 1 
HETATM 2 O O1A NAD . . . C 3 1.463 22.725 26.371 1 55.36 ? O1A NAD 600 A 1 
HETATM 3 O O2A NAD . . . C 3 3.56 23.773 25.003 1 52 ? O2A NAD 600 A 1 
HETATM 4 O O5B NAD . . . C 3 3.122 24.238 27.515 1 49.87 ? O5B NAD 600 A 1 
HETATM 5 C C5B NAD . . . C 3 2.323 24.17 28.742 1 49.88 ? C5B NAD 600 A 1 
HETATM 6 C C4B NAD . . . C 3 3.184 23.581 29.837 1 49.68 ? C4B NAD 600 A 1 
HETATM 7 O O4B NAD . . . C 3 2.314 23.553 31.032 1 50.79 ? O4B NAD 600 A 1 
HETATM 8 C C3B NAD . . . C 3 3.638 22.087 29.644 1 50.26 ? C3B NAD 600 A 1 
HETATM 9 O O3B NAD . . . C 3 5.095 21.998 29.651 1 48.35 ? O3B NAD 600 A 1 
HETATM 10 C C2B NAD . . . C 3 2.98 21.29 30.766 1 50.67 ? C2B NAD 600 A 1 
HETATM 11 O O2B NAD . . . C 3 3.672 20.204 31.291 1 51.61 ? O2B NAD 600 A 1 
HETATM 12 C C1B NAD . . . C 3 2.648 22.403 31.778 1 50.92 ? C1B NAD 600 A 1 
HETATM 13 N N9A NAD . . . C 3 1.473 22.097 32.583 1 51.07 ? N9A NAD 600 A 1 
HETATM 14 C C8A NAD . . . C 3 0.31 21.363 32.346 1 51.03 ? C8A NAD 600 A 1 
HETATM 15 N N7A NAD . . . C 3 -0.522 21.338 33.376 1 50.76 ? N7A NAD 600 A 1 
HETATM 16 C C5A NAD . . . C 3 0.042 22.061 34.355 1 51.68 ? C5A NAD 600 A 1 
HETATM 17 C C6A NAD . . . C 3 -0.376 22.4 35.728 1 51.49 ? C6A NAD 600 A 1 
HETATM 18 N N6A NAD . . . C 3 -1.518 21.996 36.245 1 50.29 ? N6A NAD 600 A 1 
HETATM 19 N N1A NAD . . . C 3 0.528 23.192 36.43 1 52.81 ? N1A NAD 600 A 1 
HETATM 20 C C2A NAD . . . C 3 1.709 23.639 35.964 1 52.15 ? C2A NAD 600 A 1 
HETATM 21 N N3A NAD . . . C 3 2.156 23.343 34.669 1 50.22 ? N3A NAD 600 A 1 
HETATM 22 C C4A NAD . . . C 3 1.295 22.545 33.899 1 51.51 ? C4A NAD 600 A 1 
HETATM 23 O O3 NAD . . . C 3 1.903 24.665 25.773 1 55.76 ? O3 NAD 600 A 1 
HETATM 24 P PN NAD . . . C 3 2.215 26.175 25.166 1 55.59 ? PN NAD 600 A 1 
HETATM 25 O O1N NAD . . . C 3 2.299 26.079 23.7 1 54.35 ? O1N NAD 600 A 1 
HETATM 26 O O2N NAD . . . C 3 3.388 26.705 25.93 1 54.5 ? O2N NAD 600 A 1 
HETATM 27 O O5D NAD . . . C 3 0.833 26.942 25.539 1 53.69 ? O5D NAD 600 A 1 
HETATM 28 C C5D NAD . . . C 3 0.493 27.189 26.939 1 55.22 ? C5D NAD 600 A 1 
HETATM 29 C C4D NAD . . . C 3 -0.887 27.722 27.058 1 56.29 ? C4D NAD 600 A 1 
HETATM 30 O O4D NAD . . . C 3 -1.139 28.746 26 1 56.71 ? O4D NAD 600 A 1 
HETATM 31 C C3D NAD . . . C 3 -2.018 26.65 26.857 1 56.95 ? C3D NAD 600 A 1 
HETATM 32 O O3D NAD . . . C 3 -2.981 26.723 27.925 1 56.93 ? O3D NAD 600 A 1 
HETATM 33 C C2D NAD . . . C 3 -2.662 27.018 25.509 1 56.76 ? C2D NAD 600 A 1 
HETATM 34 O O2D NAD . . . C 3 -3.99 26.582 25.398 1 56.79 ? O2D NAD 600 A 1 
HETATM 35 C C1D NAD . . . C 3 -2.477 28.578 25.477 1 57.42 ? C1D NAD 600 A 1 
HETATM 36 N N1N NAD . . . C 3 -2.586 29.175 24.094 1 47.87 ? N1N NAD 600 A 1 
HETATM 37 C C2N NAD . . . C 3 -3.268 30.447 24.113 1 45.59 ? C2N NAD 600 A 1 
HETATM 38 C C3N NAD . . . C 3 -2.857 31.551 23.485 1 41.45 ? C3N NAD 600 A 1 
HETATM 39 C C7N NAD . . . C 3 -3.66 32.832 23.576 1 39.4 ? C7N NAD 600 A 1 
HETATM 40 O O7N NAD . . . C 3 -4.197 33.267 22.534 1 40.08 ? O7N NAD 600 A 1 
HETATM 41 N N7N NAD . . . C 3 -3.774 33.458 24.753 1 35.34 ? N7N NAD 600 A 1 
HETATM 42 C C4N NAD . . . C 3 -1.584 31.601 22.654 1 43.17 ? C4N NAD 600 A 1 
HETATM 43 C C5N NAD . . . C 3 -0.839 30.281 22.62 1 46.86 ? C5N NAD 600 A 1 
HETATM 44 C C6N NAD . . . C 3 -1.348 29.146 23.321 1 48.15 ? C6N NAD 600 A 1 
#
_model_server_stats.io_time_ms              106 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#