data_1HLG # _model_server_result.job_id ksdMoesLW6g3M5Mo393zvw _model_server_result.datetime_utc '2024-11-23 00:37:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hlg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2}' # _entry.id 1HLG # _exptl.entry_id 1HLG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HLG _cell.length_a 244.33 _cell.length_b 244.33 _cell.length_c 244.33 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HLG _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 3 NAG 2 n C NAG 2 C 2 NAG C 4 NAG 2 n D NAG 1 D 1 NAG D 3 NAG 2 n D NAG 2 D 2 NAG D 4 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 219 A CYS 227 1_555 A SG CYS 228 A CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 B SG CYS 219 B CYS 227 1_555 B SG CYS 228 B CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 E C1 NAG . A NAG 1 1_555 A ND2 ASN 7 A ASN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale2 F C1 NAG . A NAG 2 1_555 A ND2 ASN 72 A ASN 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale3 G C1 NAG . A NAG 5 1_555 A ND2 ASN 300 A ASN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale4 A ND2 ASN 244 A ASN 252 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 H C1 NAG . B NAG 1 1_555 B ND2 ASN 7 B ASN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale6 I C1 NAG . B NAG 2 1_555 B ND2 ASN 72 B ASN 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale7 J C1 NAG . B NAG 5 1_555 B ND2 ASN 300 B ASN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale8 B ND2 ASN 244 B ASN 252 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1HLG _atom_sites.fract_transf_matrix[1][1] 0.004093 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 1 1 NAG NAG . F 3 NAG A 1 2 2 NAG NAG . G 3 NAG A 1 5 5 NAG NAG . H 3 NAG B 1 1 1 NAG NAG . I 3 NAG B 1 2 2 NAG NAG . J 3 NAG B 1 5 5 NAG NAG . K 4 HOH A 1 380 1 HOH HOH . K 4 HOH A 2 381 2 HOH HOH . K 4 HOH A 3 382 3 HOH HOH . K 4 HOH A 4 383 4 HOH HOH . K 4 HOH A 5 384 5 HOH HOH . K 4 HOH A 6 385 6 HOH HOH . K 4 HOH A 7 386 7 HOH HOH . K 4 HOH A 8 387 8 HOH HOH . K 4 HOH A 9 388 9 HOH HOH . K 4 HOH A 10 389 10 HOH HOH . K 4 HOH A 11 390 11 HOH HOH . K 4 HOH A 12 391 12 HOH HOH . K 4 HOH A 13 392 13 HOH HOH . K 4 HOH A 14 393 14 HOH HOH . K 4 HOH A 15 394 15 HOH HOH . K 4 HOH A 16 395 16 HOH HOH . K 4 HOH A 17 396 17 HOH HOH . K 4 HOH A 18 397 18 HOH HOH . K 4 HOH A 19 398 19 HOH HOH . K 4 HOH A 20 399 20 HOH HOH . K 4 HOH A 21 400 21 HOH HOH . K 4 HOH A 22 401 22 HOH HOH . K 4 HOH A 23 402 23 HOH HOH . K 4 HOH A 24 403 24 HOH HOH . K 4 HOH A 25 404 25 HOH HOH . K 4 HOH A 26 405 26 HOH HOH . K 4 HOH A 27 406 27 HOH HOH . K 4 HOH A 28 407 28 HOH HOH . K 4 HOH A 29 408 29 HOH HOH . K 4 HOH A 30 409 30 HOH HOH . K 4 HOH A 31 410 31 HOH HOH . K 4 HOH A 32 411 32 HOH HOH . K 4 HOH A 33 412 33 HOH HOH . K 4 HOH A 34 413 34 HOH HOH . K 4 HOH A 35 414 36 HOH HOH . K 4 HOH A 36 415 37 HOH HOH . K 4 HOH A 37 416 38 HOH HOH . K 4 HOH A 38 417 39 HOH HOH . K 4 HOH A 39 418 40 HOH HOH . K 4 HOH A 40 419 41 HOH HOH . K 4 HOH A 41 420 42 HOH HOH . K 4 HOH A 42 421 43 HOH HOH . K 4 HOH A 43 422 44 HOH HOH . K 4 HOH A 44 423 45 HOH HOH . K 4 HOH A 45 424 135 HOH HOH . K 4 HOH A 46 425 146 HOH HOH . L 4 HOH B 1 380 35 HOH HOH . L 4 HOH B 2 381 46 HOH HOH . L 4 HOH B 3 382 101 HOH HOH . L 4 HOH B 4 383 102 HOH HOH . L 4 HOH B 5 384 103 HOH HOH . L 4 HOH B 6 385 104 HOH HOH . L 4 HOH B 7 386 105 HOH HOH . L 4 HOH B 8 387 106 HOH HOH . L 4 HOH B 9 388 107 HOH HOH . L 4 HOH B 10 389 108 HOH HOH . L 4 HOH B 11 390 109 HOH HOH . L 4 HOH B 12 391 110 HOH HOH . L 4 HOH B 13 392 111 HOH HOH . L 4 HOH B 14 393 112 HOH HOH . L 4 HOH B 15 394 113 HOH HOH . L 4 HOH B 16 395 114 HOH HOH . L 4 HOH B 17 396 115 HOH HOH . L 4 HOH B 18 397 116 HOH HOH . L 4 HOH B 19 398 117 HOH HOH . L 4 HOH B 20 399 118 HOH HOH . L 4 HOH B 21 400 119 HOH HOH . L 4 HOH B 22 401 120 HOH HOH . L 4 HOH B 23 402 121 HOH HOH . L 4 HOH B 24 403 122 HOH HOH . L 4 HOH B 25 404 123 HOH HOH . L 4 HOH B 26 405 124 HOH HOH . L 4 HOH B 27 406 125 HOH HOH . L 4 HOH B 28 407 126 HOH HOH . L 4 HOH B 29 408 127 HOH HOH . L 4 HOH B 30 409 128 HOH HOH . L 4 HOH B 31 410 129 HOH HOH . L 4 HOH B 32 411 130 HOH HOH . L 4 HOH B 33 412 131 HOH HOH . L 4 HOH B 34 413 132 HOH HOH . L 4 HOH B 35 414 133 HOH HOH . L 4 HOH B 36 415 134 HOH HOH . L 4 HOH B 37 416 136 HOH HOH . L 4 HOH B 38 417 137 HOH HOH . L 4 HOH B 39 418 138 HOH HOH . L 4 HOH B 40 419 139 HOH HOH . L 4 HOH B 41 420 140 HOH HOH . L 4 HOH B 42 421 141 HOH HOH . L 4 HOH B 43 422 142 HOH HOH . L 4 HOH B 44 423 143 HOH HOH . L 4 HOH B 45 424 144 HOH HOH . L 4 HOH B 46 425 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 3 41.388 60.665 95.207 1 61.32 ? C1 NAG 2 A 1 HETATM 2 C C2 NAG . . . F 3 41.065 60.988 96.685 1 61.74 ? C2 NAG 2 A 1 HETATM 3 C C3 NAG . . . F 3 42.077 60.309 97.6 1 61.1 ? C3 NAG 2 A 1 HETATM 4 C C4 NAG . . . F 3 41.976 58.807 97.359 1 61.02 ? C4 NAG 2 A 1 HETATM 5 C C5 NAG . . . F 3 42.334 58.543 95.877 1 63.55 ? C5 NAG 2 A 1 HETATM 6 C C6 NAG . . . F 3 42.239 57.087 95.508 1 67.21 ? C6 NAG 2 A 1 HETATM 7 C C7 NAG . . . F 3 39.992 63.152 96.735 1 71.94 ? C7 NAG 2 A 1 HETATM 8 C C8 NAG . . . F 3 40.082 64.66 97.007 1 69.75 ? C8 NAG 2 A 1 HETATM 9 N N2 NAG . . . F 3 41.086 62.416 96.928 1 68.23 ? N2 NAG 2 A 1 HETATM 10 O O3 NAG . . . F 3 41.782 60.613 98.954 1 59.9 ? O3 NAG 2 A 1 HETATM 11 O O4 NAG . . . F 3 42.815 58.068 98.266 1 59.12 ? O4 NAG 2 A 1 HETATM 12 O O5 NAG . . . F 3 41.413 59.24 94.996 1 61.1 ? O5 NAG 2 A 1 HETATM 13 O O6 NAG . . . F 3 42.56 56.914 94.133 1 75.77 ? O6 NAG 2 A 1 HETATM 14 O O7 NAG . . . F 3 38.931 62.666 96.342 1 75.14 ? O7 NAG 2 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #