data_1HLK # _model_server_result.job_id k1BdRLfbpoF_r2RxkSZLNA _model_server_result.datetime_utc '2025-03-01 04:23:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hlk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2003}' # _entry.id 1HLK # _exptl.entry_id 1HLK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 322.267 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7,8-DIHYDROXY-1-METHOXY-3-METHYL-10-OXO-4,10-DIHYDRO-1H,3H-PYRANO[4,3-B]CHROMENE-9-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 92.8 _cell.angle_beta 95.3 _cell.angle_gamma 98 _cell.entry_id 1HLK _cell.length_a 41.8 _cell.length_b 44.2 _cell.length_c 58.5 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HLK _symmetry.cell_setting triclinic _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 50 A THR 70 1_555 E NA NA . A NA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc2 A NE2 HIS 79 A HIS 99 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc3 A ND1 HIS 81 A HIS 101 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 A OD2 ASP 83 A ASP 103 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc5 A O ASP 83 A ASP 103 1_555 E NA NA . A NA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc6 A NE2 HIS 142 A HIS 162 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc7 A SG CYS 161 A CYS 181 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc8 A NE2 HIS 203 A HIS 223 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc9 D ZN ZN . A ZN 1002 1_555 F O19 113 . A 113 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc10 E NA NA . A NA 2001 1_555 K O HOH . A HOH 2016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc11 B O ASN 35 B ASN 55 1_555 I NA NA . B NA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc12 B NE2 HIS 79 B HIS 99 1_555 G ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc13 B ND1 HIS 81 B HIS 101 1_555 G ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc14 B OD2 ASP 83 B ASP 103 1_555 H ZN ZN . B ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc15 B O ASP 83 B ASP 103 1_555 I NA NA . B NA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc16 B NE2 HIS 142 B HIS 162 1_555 G ZN ZN . B ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc17 B SG CYS 161 B CYS 181 1_555 H ZN ZN . B ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc18 B NE2 HIS 203 B HIS 223 1_555 H ZN ZN . B ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc19 G ZN ZN . B ZN 1003 1_555 L O HOH . B HOH 2018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc20 H ZN ZN . B ZN 1004 1_555 J O19 113 . B 113 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc21 H ZN ZN . B ZN 1004 1_555 L O HOH . B HOH 2018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? # _chem_comp.formula 'C15 H14 O8' _chem_comp.formula_weight 322.267 _chem_comp.id 113 _chem_comp.mon_nstd_flag . _chem_comp.name '7,8-DIHYDROXY-1-METHOXY-3-METHYL-10-OXO-4,10-DIHYDRO-1H,3H-PYRANO[4,3-B]CHROMENE-9-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 113 doub 1 n y C1 C6 113 sing 2 n y C1 O17 113 sing 3 n n C2 C3 113 sing 4 n y C2 H2 113 sing 5 n n C3 C4 113 doub 6 n y C3 O8 113 sing 7 n y C4 C5 113 sing 8 n y C4 C11 113 sing 9 n y C5 C6 113 doub 10 n y C5 C18 113 sing 11 n n C6 O16 113 sing 12 n n O8 C9 113 sing 13 n y C9 C10 113 doub 14 n y C9 C12 113 sing 15 n n C10 C11 113 sing 16 n y C10 C15 113 sing 17 n n C11 O31 113 doub 18 n n C12 C13 113 sing 19 n n C12 H121 113 sing 20 n n C12 H122 113 sing 21 n n C13 O14 113 sing 22 n n C13 C26 113 sing 23 n n C13 H13 113 sing 24 n n O14 C15 113 sing 25 n n C15 O20 113 sing 26 n n C15 H15 113 sing 27 n n O16 H16 113 sing 28 n n O17 H17 113 sing 29 n n C18 O19 113 sing 30 n n C18 O30 113 doub 31 n n O19 H19 113 sing 32 n n O20 C22 113 sing 33 n n C22 H221 113 sing 34 n n C22 H222 113 sing 35 n n C22 H223 113 sing 36 n n C26 H261 113 sing 37 n n C26 H262 113 sing 38 n n C26 H263 113 sing 39 n n # _atom_sites.entry_id 1HLK _atom_sites.fract_transf_matrix[1][1] 0.023923 _atom_sites.fract_transf_matrix[1][2] 0.003362 _atom_sites.fract_transf_matrix[1][3] 0.002434 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022847 _atom_sites.fract_transf_matrix[2][3] 0.001433 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1001 ZN ZN . D 2 ZN A 1 1002 1002 ZN ZN . E 3 NA A 1 2001 2001 NA NA . F 4 113 A 1 2002 101 113 113 . G 2 ZN B 1 1003 1003 ZN ZN . H 2 ZN B 1 1004 1004 ZN ZN . I 3 NA B 1 2002 2002 NA NA . J 4 113 B 1 2003 102 113 113 . K 5 HOH A 1 2003 6 HOH HOH . K 5 HOH A 2 2004 9 HOH HOH . K 5 HOH A 3 2005 10 HOH HOH . K 5 HOH A 4 2006 14 HOH HOH . K 5 HOH A 5 2007 20 HOH HOH . K 5 HOH A 6 2008 21 HOH HOH . K 5 HOH A 7 2009 22 HOH HOH . K 5 HOH A 8 2010 23 HOH HOH . K 5 HOH A 9 2011 24 HOH HOH . K 5 HOH A 10 2012 25 HOH HOH . K 5 HOH A 11 2013 27 HOH HOH . K 5 HOH A 12 2014 30 HOH HOH . K 5 HOH A 13 2015 31 HOH HOH . K 5 HOH A 14 2016 32 HOH HOH . K 5 HOH A 15 2017 37 HOH HOH . K 5 HOH A 16 2018 38 HOH HOH . K 5 HOH A 17 2019 40 HOH HOH . K 5 HOH A 18 2020 42 HOH HOH . K 5 HOH A 19 2021 44 HOH HOH . K 5 HOH A 20 2022 46 HOH HOH . K 5 HOH A 21 2023 48 HOH HOH . K 5 HOH A 22 2024 50 HOH HOH . K 5 HOH A 23 2025 54 HOH HOH . K 5 HOH A 24 2026 55 HOH HOH . K 5 HOH A 25 2027 56 HOH HOH . K 5 HOH A 26 2028 58 HOH HOH . K 5 HOH A 27 2029 59 HOH HOH . K 5 HOH A 28 2030 61 HOH HOH . K 5 HOH A 29 2031 71 HOH HOH . K 5 HOH A 30 2032 73 HOH HOH . K 5 HOH A 31 2033 75 HOH HOH . K 5 HOH A 32 2034 76 HOH HOH . K 5 HOH A 33 2035 77 HOH HOH . K 5 HOH A 34 2036 79 HOH HOH . K 5 HOH A 35 2037 82 HOH HOH . K 5 HOH A 36 2038 83 HOH HOH . L 5 HOH B 1 2004 1 HOH HOH . L 5 HOH B 2 2005 2 HOH HOH . L 5 HOH B 3 2006 3 HOH HOH . L 5 HOH B 4 2007 4 HOH HOH . L 5 HOH B 5 2008 5 HOH HOH . L 5 HOH B 6 2009 7 HOH HOH . L 5 HOH B 7 2010 8 HOH HOH . L 5 HOH B 8 2011 11 HOH HOH . L 5 HOH B 9 2012 12 HOH HOH . L 5 HOH B 10 2013 13 HOH HOH . L 5 HOH B 11 2014 15 HOH HOH . L 5 HOH B 12 2015 16 HOH HOH . L 5 HOH B 13 2016 17 HOH HOH . L 5 HOH B 14 2017 18 HOH HOH . L 5 HOH B 15 2018 19 HOH HOH . L 5 HOH B 16 2019 26 HOH HOH . L 5 HOH B 17 2020 28 HOH HOH . L 5 HOH B 18 2021 29 HOH HOH . L 5 HOH B 19 2022 33 HOH HOH . L 5 HOH B 20 2023 34 HOH HOH . L 5 HOH B 21 2024 35 HOH HOH . L 5 HOH B 22 2025 36 HOH HOH . L 5 HOH B 23 2026 39 HOH HOH . L 5 HOH B 24 2027 41 HOH HOH . L 5 HOH B 25 2028 43 HOH HOH . L 5 HOH B 26 2029 45 HOH HOH . L 5 HOH B 27 2030 47 HOH HOH . L 5 HOH B 28 2031 49 HOH HOH . L 5 HOH B 29 2032 51 HOH HOH . L 5 HOH B 30 2033 52 HOH HOH . L 5 HOH B 31 2034 53 HOH HOH . L 5 HOH B 32 2035 57 HOH HOH . L 5 HOH B 33 2036 60 HOH HOH . L 5 HOH B 34 2037 62 HOH HOH . L 5 HOH B 35 2038 63 HOH HOH . L 5 HOH B 36 2039 64 HOH HOH . L 5 HOH B 37 2040 65 HOH HOH . L 5 HOH B 38 2041 66 HOH HOH . L 5 HOH B 39 2042 67 HOH HOH . L 5 HOH B 40 2043 68 HOH HOH . L 5 HOH B 41 2044 69 HOH HOH . L 5 HOH B 42 2045 70 HOH HOH . L 5 HOH B 43 2046 72 HOH HOH . L 5 HOH B 44 2047 74 HOH HOH . L 5 HOH B 45 2048 78 HOH HOH . L 5 HOH B 46 2049 80 HOH HOH . L 5 HOH B 47 2050 81 HOH HOH . L 5 HOH B 48 2051 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 113 . . . J 4 3.724 12.267 -1.891 1 35.75 ? C1 113 2003 B 1 HETATM 2 C C2 113 . . . J 4 4.147 12.957 -0.755 1 35.39 ? C2 113 2003 B 1 HETATM 3 C C3 113 . . . J 4 3.27 13.127 0.315 1 35.59 ? C3 113 2003 B 1 HETATM 4 C C4 113 . . . J 4 1.974 12.561 0.281 1 35.67 ? C4 113 2003 B 1 HETATM 5 C C5 113 . . . J 4 1.521 11.947 -0.927 1 35.57 ? C5 113 2003 B 1 HETATM 6 C C6 113 . . . J 4 2.431 11.769 -1.993 1 35.17 ? C6 113 2003 B 1 HETATM 7 O O8 113 . . . J 4 3.701 13.861 1.399 1 35.95 ? O8 113 2003 B 1 HETATM 8 C C9 113 . . . J 4 2.963 13.957 2.556 1 36.81 ? C9 113 2003 B 1 HETATM 9 C C10 113 . . . J 4 1.697 13.487 2.654 1 36.97 ? C10 113 2003 B 1 HETATM 10 C C11 113 . . . J 4 1.161 12.652 1.521 1 35.49 ? C11 113 2003 B 1 HETATM 11 C C12 113 . . . J 4 3.678 14.636 3.699 1 37.81 ? C12 113 2003 B 1 HETATM 12 C C13 113 . . . J 4 2.675 15.277 4.669 1 37.32 ? C13 113 2003 B 1 HETATM 13 O O14 113 . . . J 4 1.622 14.361 4.953 1 38.44 ? O14 113 2003 B 1 HETATM 14 C C15 113 . . . J 4 0.85 13.819 3.88 1 37.23 ? C15 113 2003 B 1 HETATM 15 O O16 113 . . . J 4 2.134 11.12 -3.181 1 31.22 ? O16 113 2003 B 1 HETATM 16 O O17 113 . . . J 4 4.557 12.047 -2.969 1 37.58 ? O17 113 2003 B 1 HETATM 17 C C18 113 . . . J 4 0.131 11.498 -1.132 1 35.3 ? C18 113 2003 B 1 HETATM 18 O O19 113 . . . J 4 -0.028 10.172 -1.273 1 35.86 ? O19 113 2003 B 1 HETATM 19 O O20 113 . . . J 4 -0.266 14.648 3.577 1 37.55 ? O20 113 2003 B 1 HETATM 20 C C22 113 . . . J 4 -1.508 14.442 4.207 1 33.49 ? C22 113 2003 B 1 HETATM 21 C C26 113 . . . J 4 3.311 15.702 5.996 1 37.85 ? C26 113 2003 B 1 HETATM 22 O O30 113 . . . J 4 -0.797 12.27 -1.174 1 34.13 ? O30 113 2003 B 1 HETATM 23 O O31 113 . . . J 4 0.1 12.097 1.678 1 34.87 ? O31 113 2003 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #