data_1HLM
#
_model_server_result.job_id            6tLlPvtc83WovKOr85qucQ 
_model_server_result.datetime_utc      '2025-03-05 21:13:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hlm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":159}' 
#
_entry.id    1HLM 
#
_exptl.entry_id    1HLM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1HLM 
_cell.length_a            77 
_cell.length_b            77 
_cell.length_c            61.5 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HLM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N GLY 2 A GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
metalc ? metalc1 A NE2 HIS 105 A HIS 104 1_555 C FE HEM . A HEM 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc2 C FE HEM . A HEM 159 1_555 B C CYN . A CYN 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? 
metalc ? metalc3 C FE HEM . A HEM 159 1_555 B N CYN . A CYN 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 123 n n 
CHA C4D HEM doub 124 n n 
CHA HHA HEM sing 125 n n 
CHB C4A HEM sing 126 n n 
CHB C1B HEM doub 127 n n 
CHB HHB HEM sing 128 n n 
CHC C4B HEM sing 129 n n 
CHC C1C HEM doub 130 n n 
CHC HHC HEM sing 131 n n 
CHD C4C HEM doub 132 n n 
CHD C1D HEM sing 133 n n 
CHD HHD HEM sing 134 n n 
C1A C2A HEM doub 135 n y 
C1A NA HEM sing 136 n y 
C2A C3A HEM sing 137 n y 
C2A CAA HEM sing 138 n n 
C3A C4A HEM doub 139 n y 
C3A CMA HEM sing 140 n n 
C4A NA HEM sing 141 n y 
CMA HMA HEM sing 142 n n 
CMA HMAA HEM sing 143 n n 
CMA HMAB HEM sing 144 n n 
CAA CBA HEM sing 145 n n 
CAA HAA HEM sing 146 n n 
CAA HAAA HEM sing 147 n n 
CBA CGA HEM sing 148 n n 
CBA HBA HEM sing 149 n n 
CBA HBAA HEM sing 150 n n 
CGA O1A HEM doub 151 n n 
CGA O2A HEM sing 152 n n 
C1B C2B HEM sing 153 n n 
C1B NB HEM sing 154 n n 
C2B C3B HEM doub 155 n n 
C2B CMB HEM sing 156 n n 
C3B C4B HEM sing 157 n n 
C3B CAB HEM sing 158 n n 
C4B NB HEM doub 159 n n 
CMB HMB HEM sing 160 n n 
CMB HMBA HEM sing 161 n n 
CMB HMBB HEM sing 162 n n 
CAB CBB HEM doub 163 n n 
CAB HAB HEM sing 164 n n 
CBB HBB HEM sing 165 n n 
CBB HBBA HEM sing 166 n n 
C1C C2C HEM sing 167 n y 
C1C NC HEM sing 168 n y 
C2C C3C HEM doub 169 n y 
C2C CMC HEM sing 170 n n 
C3C C4C HEM sing 171 n y 
C3C CAC HEM sing 172 n n 
C4C NC HEM sing 173 n y 
CMC HMC HEM sing 174 n n 
CMC HMCA HEM sing 175 n n 
CMC HMCB HEM sing 176 n n 
CAC CBC HEM doub 177 n n 
CAC HAC HEM sing 178 n n 
CBC HBC HEM sing 179 n n 
CBC HBCA HEM sing 180 n n 
C1D C2D HEM sing 181 n n 
C1D ND HEM doub 182 n n 
C2D C3D HEM doub 183 n n 
C2D CMD HEM sing 184 n n 
C3D C4D HEM sing 185 n n 
C3D CAD HEM sing 186 n n 
C4D ND HEM sing 187 n n 
CMD HMD HEM sing 188 n n 
CMD HMDA HEM sing 189 n n 
CMD HMDB HEM sing 190 n n 
CAD CBD HEM sing 191 n n 
CAD HAD HEM sing 192 n n 
CAD HADA HEM sing 193 n n 
CBD CGD HEM sing 194 n n 
CBD HBD HEM sing 195 n n 
CBD HBDA HEM sing 196 n n 
CGD O1D HEM doub 197 n n 
CGD O2D HEM sing 198 n n 
O2A H2A HEM sing 199 n n 
O2D H2D HEM sing 200 n n 
FE NA HEM sing 201 n n 
FE NB HEM sing 202 n n 
FE NC HEM sing 203 n n 
FE ND HEM sing 204 n n 
#
_atom_sites.entry_id                     1HLM 
_atom_sites.fract_transf_matrix[1][1]    0.012987 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012987 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01626 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CYN A 1 160 160 CYN CYN . 
C 3 HEM A 1 159 159 HEM HEM . 
D 4 HOH A 1 161 161 HOH HOH . 
D 4 HOH A 2 162 162 HOH HOH . 
D 4 HOH A 3 163 163 HOH HOH . 
D 4 HOH A 4 164 164 HOH HOH . 
D 4 HOH A 5 165 165 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 24.433 32.84 3.336 1 16.5 ? CHA HEM 159 A 1 
HETATM 2 C CHB HEM . . . C 3 22.424 29.788 6.343 1 18.45 ? CHB HEM 159 A 1 
HETATM 3 C CHC HEM . . . C 3 21.289 33.365 9.275 1 22.02 ? CHC HEM 159 A 1 
HETATM 4 C CHD HEM . . . C 3 23.47 36.412 6.331 1 26.01 ? CHD HEM 159 A 1 
HETATM 5 C C1A HEM . . . C 3 24.041 31.647 3.914 1 14.48 ? C1A HEM 159 A 1 
HETATM 6 C C2A HEM . . . C 3 24.289 30.388 3.371 1 13.81 ? C2A HEM 159 A 1 
HETATM 7 C C3A HEM . . . C 3 23.499 29.541 4.126 1 16.5 ? C3A HEM 159 A 1 
HETATM 8 C C4A HEM . . . C 3 23.081 30.302 5.221 1 17.65 ? C4A HEM 159 A 1 
HETATM 9 C CMA HEM . . . C 3 23.211 28.071 3.814 1 15.61 ? CMA HEM 159 A 1 
HETATM 10 C CAA HEM . . . C 3 25.272 29.968 2.258 1 13.49 ? CAA HEM 159 A 1 
HETATM 11 C CBA HEM . . . C 3 26.726 29.624 2.738 1 15.17 ? CBA HEM 159 A 1 
HETATM 12 C CGA HEM . . . C 3 27.75 29.212 1.647 1 18.69 ? CGA HEM 159 A 1 
HETATM 13 O O1A HEM . . . C 3 28.197 30.111 0.918 1 24.73 ? O1A HEM 159 A 1 
HETATM 14 O O2A HEM . . . C 3 28.135 28.031 1.579 1 7.46 ? O2A HEM 159 A 1 
HETATM 15 C C1B HEM . . . C 3 21.973 30.482 7.473 1 20.6 ? C1B HEM 159 A 1 
HETATM 16 C C2B HEM . . . C 3 21.585 29.882 8.671 1 20.96 ? C2B HEM 159 A 1 
HETATM 17 C C3B HEM . . . C 3 20.976 30.904 9.371 1 21.12 ? C3B HEM 159 A 1 
HETATM 18 C C4B HEM . . . C 3 21.396 32.071 8.743 1 22.84 ? C4B HEM 159 A 1 
HETATM 19 C CMB HEM . . . C 3 21.927 28.466 9.154 1 19.98 ? CMB HEM 159 A 1 
HETATM 20 C CAB HEM . . . C 3 20.113 30.843 10.455 1 19.66 ? CAB HEM 159 A 1 
HETATM 21 C CBB HEM . . . C 3 19.588 29.653 11.094 1 22 ? CBB HEM 159 A 1 
HETATM 22 C C1C HEM . . . C 3 21.735 34.567 8.727 1 23.43 ? C1C HEM 159 A 1 
HETATM 23 C C2C HEM . . . C 3 21.657 35.779 9.377 1 25.6 ? C2C HEM 159 A 1 
HETATM 24 C C3C HEM . . . C 3 22.43 36.639 8.621 1 24.85 ? C3C HEM 159 A 1 
HETATM 25 C C4C HEM . . . C 3 22.749 35.937 7.445 1 24.52 ? C4C HEM 159 A 1 
HETATM 26 C CMC HEM . . . C 3 20.917 36.086 10.664 1 26.09 ? CMC HEM 159 A 1 
HETATM 27 C CAC HEM . . . C 3 22.78 37.912 9.074 1 24.38 ? CAC HEM 159 A 1 
HETATM 28 C CBC HEM . . . C 3 23.583 38.91 8.381 1 26.44 ? CBC HEM 159 A 1 
HETATM 29 C C1D HEM . . . C 3 24.025 35.7 5.263 1 22.11 ? C1D HEM 159 A 1 
HETATM 30 C C2D HEM . . . C 3 24.744 36.251 4.221 1 22.6 ? C2D HEM 159 A 1 
HETATM 31 C C3D HEM . . . C 3 24.838 35.258 3.243 1 23.31 ? C3D HEM 159 A 1 
HETATM 32 C C4D HEM . . . C 3 24.387 34.116 3.893 1 18.9 ? C4D HEM 159 A 1 
HETATM 33 C CMD HEM . . . C 3 25.378 37.63 4.211 1 25.84 ? CMD HEM 159 A 1 
HETATM 34 C CAD HEM . . . C 3 25.468 35.345 1.839 1 24.03 ? CAD HEM 159 A 1 
HETATM 35 C CBD HEM . . . C 3 24.587 34.911 0.661 1 31.44 ? CBD HEM 159 A 1 
HETATM 36 C CGD HEM . . . C 3 25.312 34.437 -0.615 1 41.7 ? CGD HEM 159 A 1 
HETATM 37 O O1D HEM . . . C 3 25.274 33.24 -0.911 1 41.15 ? O1D HEM 159 A 1 
HETATM 38 O O2D HEM . . . C 3 25.865 35.243 -1.373 1 47.07 ? O2D HEM 159 A 1 
HETATM 39 N NA HEM . . . C 3 23.404 31.601 5.096 1 18.7 ? NA HEM 159 A 1 
HETATM 40 N NB HEM . . . C 3 21.948 31.816 7.55 1 19.35 ? NB HEM 159 A 1 
HETATM 41 N NC HEM . . . C 3 22.334 34.661 7.526 1 20.87 ? NC HEM 159 A 1 
HETATM 42 N ND HEM . . . C 3 23.929 34.381 5.126 1 19.52 ? ND HEM 159 A 1 
HETATM 43 FE FE HEM . . . C 3 23.294 33.07 6.599 1 15.68 ? FE HEM 159 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#