data_1HLT # _model_server_result.job_id 8TyVp9ywwbo3k6vahOWRgw _model_server_result.datetime_utc '2024-10-24 04:32:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hlt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 1HLT # _exptl.entry_id 1HLT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 453.986 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HLT _cell.length_a 50.9 _cell.length_b 50.9 _cell.length_c 325.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HLT _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf5 C SG CYS 3 J CYS 1 1_555 D SG CYS 119 K CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? disulf ? disulf6 D SG CYS 28 K CYS 42 1_555 D SG CYS 44 K CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf7 D SG CYS 173 K CYS 168 1_555 D SG CYS 187 K CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 D SG CYS 201 K CYS 191 1_555 D SG CYS 231 K CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? covale ? covale1 F C3 0G6 . H 0G6 1 1_555 B NE2 HIS 43 H HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? covale ? covale2 F C2 0G6 . H 0G6 1 1_555 B OG SER 205 H SER 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.724 ? covale ? covale3 G C3 0G6 . K 0G6 1 1_555 D NE2 HIS 43 K HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.663 ? covale ? covale4 G C2 0G6 . K 0G6 1 1_555 D OG SER 205 K SER 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? # _chem_comp.formula 'C21 H34 Cl N6 O3 1' _chem_comp.formula_weight 453.986 _chem_comp.id 0G6 _chem_comp.mon_nstd_flag . _chem_comp.name D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms PPACK # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 0G6 sing 1 n n N H 0G6 sing 2 n n N H2 0G6 sing 3 n n CA C 0G6 sing 4 n n CA CB 0G6 sing 5 n n CA HA 0G6 sing 6 n n C O 0G6 doub 7 n n C N1 0G6 sing 8 n n CB CG 0G6 sing 9 n n CB HB2 0G6 sing 10 n n CB HB3 0G6 sing 11 n n CG CD1 0G6 doub 12 n y CG CD2 0G6 sing 13 n y CD1 CE1 0G6 sing 14 n y CD1 HD1 0G6 sing 15 n n CD2 CE2 0G6 doub 16 n y CD2 HD2 0G6 sing 17 n n CE1 CZ 0G6 doub 18 n y CE1 HE1 0G6 sing 19 n n CE2 CZ 0G6 sing 20 n y CE2 HE2 0G6 sing 21 n n CZ HZ 0G6 sing 22 n n N1 CA1 0G6 sing 23 n n N1 CD 0G6 sing 24 n n CA1 C1 0G6 sing 25 n n CA1 CB1 0G6 sing 26 n n CA1 HA1 0G6 sing 27 n n C1 O1 0G6 doub 28 n n C1 N2 0G6 sing 29 n n CB1 CG1 0G6 sing 30 n n CB1 HB21 0G6 sing 31 n n CB1 HB31 0G6 sing 32 n n CG1 CD 0G6 sing 33 n n CG1 HG2 0G6 sing 34 n n CG1 HG3 0G6 sing 35 n n CD HD21 0G6 sing 36 n n CD HD3 0G6 sing 37 n n N2 CA2 0G6 sing 38 n n N2 H1 0G6 sing 39 n n CA2 C2 0G6 sing 40 n n CA2 CB2 0G6 sing 41 n n CA2 HA2 0G6 sing 42 n n C2 O2 0G6 sing 43 n n C2 C3 0G6 sing 44 n n CB2 CG2 0G6 sing 45 n n CB2 HB22 0G6 sing 46 n n CB2 HB32 0G6 sing 47 n n CG2 CD3 0G6 sing 48 n n CG2 HG21 0G6 sing 49 n n CG2 HG31 0G6 sing 50 n n CD3 NE 0G6 sing 51 n n CD3 HD22 0G6 sing 52 n n CD3 HD31 0G6 sing 53 n n NE CZ1 0G6 sing 54 n n NE HE 0G6 sing 55 n n CZ1 NH1 0G6 sing 56 n n CZ1 NH2 0G6 doub 57 n n NH1 HH11 0G6 sing 58 n n NH1 HH12 0G6 sing 59 n n NH2 HH21 0G6 sing 60 n n NH2 HH22 0G6 sing 61 n n C3 H11 0G6 sing 62 n n C3 H21 0G6 sing 63 n n CL C3 0G6 sing 64 n n C2 H33 0G6 sing 65 n n O2 H34 0G6 sing 66 n n # _atom_sites.entry_id 1HLT _atom_sites.fract_transf_matrix[1][1] 0.019646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 0G6 H 1 1 1 0G6 DPN . G 4 0G6 K 1 1 1 0G6 DPN . H 5 HOH L 1 902 902 HOH HOH . H 5 HOH L 2 903 903 HOH HOH . H 5 HOH L 3 907 907 HOH HOH . H 5 HOH L 4 910 910 HOH HOH . H 5 HOH L 5 926 926 HOH HOH . H 5 HOH L 6 945 945 HOH HOH . I 5 HOH H 1 703 703 HOH HOH . I 5 HOH H 2 759 759 HOH HOH . I 5 HOH H 3 901 901 HOH HOH . I 5 HOH H 4 904 904 HOH HOH . I 5 HOH H 5 905 905 HOH HOH . I 5 HOH H 6 906 906 HOH HOH . I 5 HOH H 7 908 908 HOH HOH . I 5 HOH H 8 909 909 HOH HOH . I 5 HOH H 9 911 911 HOH HOH . I 5 HOH H 10 912 912 HOH HOH . I 5 HOH H 11 913 913 HOH HOH . I 5 HOH H 12 914 914 HOH HOH . I 5 HOH H 13 915 915 HOH HOH . I 5 HOH H 14 916 916 HOH HOH . I 5 HOH H 15 917 917 HOH HOH . I 5 HOH H 16 918 918 HOH HOH . I 5 HOH H 17 919 919 HOH HOH . I 5 HOH H 18 920 920 HOH HOH . I 5 HOH H 19 921 921 HOH HOH . I 5 HOH H 20 922 922 HOH HOH . I 5 HOH H 21 923 923 HOH HOH . I 5 HOH H 22 924 924 HOH HOH . I 5 HOH H 23 927 927 HOH HOH . I 5 HOH H 24 928 928 HOH HOH . I 5 HOH H 25 929 929 HOH HOH . I 5 HOH H 26 930 930 HOH HOH . I 5 HOH H 27 931 931 HOH HOH . I 5 HOH H 28 932 932 HOH HOH . I 5 HOH H 29 933 933 HOH HOH . I 5 HOH H 30 934 934 HOH HOH . I 5 HOH H 31 935 935 HOH HOH . I 5 HOH H 32 936 936 HOH HOH . I 5 HOH H 33 937 937 HOH HOH . I 5 HOH H 34 938 938 HOH HOH . I 5 HOH H 35 939 939 HOH HOH . I 5 HOH H 36 940 940 HOH HOH . I 5 HOH H 37 942 942 HOH HOH . I 5 HOH H 38 943 943 HOH HOH . I 5 HOH H 39 944 944 HOH HOH . I 5 HOH H 40 946 946 HOH HOH . I 5 HOH H 41 947 947 HOH HOH . I 5 HOH H 42 948 948 HOH HOH . I 5 HOH H 43 949 949 HOH HOH . I 5 HOH H 44 950 950 HOH HOH . J 5 HOH J 1 710 710 HOH HOH . J 5 HOH J 2 726 726 HOH HOH . J 5 HOH J 3 730 730 HOH HOH . J 5 HOH J 4 739 739 HOH HOH . J 5 HOH J 5 741 741 HOH HOH . J 5 HOH J 6 751 751 HOH HOH . K 5 HOH K 1 701 701 HOH HOH . K 5 HOH K 2 702 702 HOH HOH . K 5 HOH K 3 704 704 HOH HOH . K 5 HOH K 4 705 705 HOH HOH . K 5 HOH K 5 706 706 HOH HOH . K 5 HOH K 6 707 707 HOH HOH . K 5 HOH K 7 708 708 HOH HOH . K 5 HOH K 8 709 709 HOH HOH . K 5 HOH K 9 711 711 HOH HOH . K 5 HOH K 10 712 712 HOH HOH . K 5 HOH K 11 713 713 HOH HOH . K 5 HOH K 12 714 714 HOH HOH . K 5 HOH K 13 715 715 HOH HOH . K 5 HOH K 14 716 716 HOH HOH . K 5 HOH K 15 717 717 HOH HOH . K 5 HOH K 16 718 718 HOH HOH . K 5 HOH K 17 719 719 HOH HOH . K 5 HOH K 18 720 720 HOH HOH . K 5 HOH K 19 721 721 HOH HOH . K 5 HOH K 20 722 722 HOH HOH . K 5 HOH K 21 723 723 HOH HOH . K 5 HOH K 22 724 724 HOH HOH . K 5 HOH K 23 725 725 HOH HOH . K 5 HOH K 24 727 727 HOH HOH . K 5 HOH K 25 728 728 HOH HOH . K 5 HOH K 26 729 729 HOH HOH . K 5 HOH K 27 731 731 HOH HOH . K 5 HOH K 28 732 732 HOH HOH . K 5 HOH K 29 733 733 HOH HOH . K 5 HOH K 30 734 734 HOH HOH . K 5 HOH K 31 735 735 HOH HOH . K 5 HOH K 32 736 736 HOH HOH . K 5 HOH K 33 737 737 HOH HOH . K 5 HOH K 34 738 738 HOH HOH . K 5 HOH K 35 740 740 HOH HOH . K 5 HOH K 36 742 742 HOH HOH . K 5 HOH K 37 743 743 HOH HOH . K 5 HOH K 38 744 744 HOH HOH . K 5 HOH K 39 745 745 HOH HOH . K 5 HOH K 40 746 746 HOH HOH . K 5 HOH K 41 747 747 HOH HOH . K 5 HOH K 42 748 748 HOH HOH . K 5 HOH K 43 749 749 HOH HOH . K 5 HOH K 44 750 750 HOH HOH . K 5 HOH K 45 752 752 HOH HOH . K 5 HOH K 46 753 753 HOH HOH . K 5 HOH K 47 754 754 HOH HOH . K 5 HOH K 48 755 755 HOH HOH . K 5 HOH K 49 756 756 HOH HOH . K 5 HOH K 50 757 757 HOH HOH . K 5 HOH K 51 758 758 HOH HOH . K 5 HOH K 52 761 761 HOH HOH . K 5 HOH K 53 762 762 HOH HOH . K 5 HOH K 54 763 763 HOH HOH . K 5 HOH K 55 764 764 HOH HOH . K 5 HOH K 56 765 765 HOH HOH . K 5 HOH K 57 766 766 HOH HOH . K 5 HOH K 58 767 767 HOH HOH . K 5 HOH K 59 768 768 HOH HOH . K 5 HOH K 60 769 769 HOH HOH . K 5 HOH K 61 770 770 HOH HOH . K 5 HOH K 62 771 771 HOH HOH . K 5 HOH K 63 772 772 HOH HOH . K 5 HOH K 64 941 941 HOH HOH . L 5 HOH R 1 760 760 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 0G6 . . . F 4 2.433 35.275 23.294 1 13.47 ? N 0G6 1 H 1 HETATM 2 C CA 0G6 . . . F 4 1.095 35.935 23.236 1 12.92 ? CA 0G6 1 H 1 HETATM 3 C C 0G6 . . . F 4 0.123 35.02 22.535 1 13.11 ? C 0G6 1 H 1 HETATM 4 O O 0G6 . . . F 4 0.148 33.816 22.789 1 12.5 ? O 0G6 1 H 1 HETATM 5 C CB 0G6 . . . F 4 0.69 36.281 24.647 1 12.28 ? CB 0G6 1 H 1 HETATM 6 C CG 0G6 . . . F 4 -0.65 36.856 24.9 1 12 ? CG 0G6 1 H 1 HETATM 7 C CD1 0G6 . . . F 4 -0.974 38.113 24.458 1 12.39 ? CD1 0G6 1 H 1 HETATM 8 C CD2 0G6 . . . F 4 -1.557 36.174 25.684 1 12 ? CD2 0G6 1 H 1 HETATM 9 C CE1 0G6 . . . F 4 -2.221 38.682 24.709 1 13.69 ? CE1 0G6 1 H 1 HETATM 10 C CE2 0G6 . . . F 4 -2.814 36.682 25.939 1 12.01 ? CE2 0G6 1 H 1 HETATM 11 C CZ 0G6 . . . F 4 -3.144 37.957 25.448 1 13.58 ? CZ 0G6 1 H 1 HETATM 12 N N1 0G6 . . . F 4 -0.724 35.621 21.726 1 14.04 ? N1 0G6 1 H 1 HETATM 13 C CA1 0G6 . . . F 4 -1.752 34.806 21.019 1 14.73 ? CA1 0G6 1 H 1 HETATM 14 C C1 0G6 . . . F 4 -0.896 33.794 20.231 1 15.27 ? C1 0G6 1 H 1 HETATM 15 O O1 0G6 . . . F 4 0.143 34.295 19.738 1 15.47 ? O1 0G6 1 H 1 HETATM 16 C CB1 0G6 . . . F 4 -2.602 35.741 20.245 1 14.37 ? CB1 0G6 1 H 1 HETATM 17 C CG1 0G6 . . . F 4 -2.156 37.108 20.528 1 14.17 ? CG1 0G6 1 H 1 HETATM 18 C CD 0G6 . . . F 4 -0.887 37.012 21.391 1 14.44 ? CD 0G6 1 H 1 HETATM 19 N N2 0G6 . . . F 4 -1.23 32.565 20.269 1 15.8 ? N2 0G6 1 H 1 HETATM 20 C CA2 0G6 . . . F 4 -0.946 31.22 19.931 1 16.05 ? CA2 0G6 1 H 1 HETATM 21 C C2 0G6 . . . F 4 -1.855 30.581 18.955 1 15.91 ? C2 0G6 1 H 1 HETATM 22 O O2 0G6 . . . F 4 -1.221 29.887 17.885 1 16.38 ? O2 0G6 1 H 1 HETATM 23 C CB2 0G6 . . . F 4 -0.513 30.298 21.063 1 16.43 ? CB2 0G6 1 H 1 HETATM 24 C CG2 0G6 . . . F 4 0.935 29.765 21.038 1 16.95 ? CG2 0G6 1 H 1 HETATM 25 C CD3 0G6 . . . F 4 1.129 28.925 22.258 1 17.21 ? CD3 0G6 1 H 1 HETATM 26 N NE 0G6 . . . F 4 2.33 29.334 23.011 1 18.24 ? NE 0G6 1 H 1 HETATM 27 C CZ1 0G6 . . . F 4 2.804 28.408 23.91 1 18.53 ? CZ1 0G6 1 H 1 HETATM 28 N NH1 0G6 . . . F 4 2.126 27.268 24.081 1 18.03 ? NH1 0G6 1 H 1 HETATM 29 N NH2 0G6 . . . F 4 3.929 28.629 24.594 1 18.65 ? NH2 0G6 1 H 1 HETATM 30 C C3 0G6 . . . F 4 -2.93 31.382 18.293 1 15.25 ? C3 0G6 1 H 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #