data_1HLU # _model_server_result.job_id iSHdtPQNIFIQ84ScVyGRUQ _model_server_result.datetime_utc '2025-01-03 04:46:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hlu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 1HLU # _exptl.entry_id 1HLU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HLU _cell.length_a 38.14 _cell.length_b 72.24 _cell.length_c 185.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HLU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N ASP 2 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C GLU 72 A GLU 72 1_555 A N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 B C ACE 1 P ACE 0 1_555 B N ALA 2 P ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 D O2G ATP . A ATP 1 1_555 C CA CA . A CA 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc2 D O3G ATP . A ATP 1 1_555 C CA CA . A CA 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc3 D O2A ATP . A ATP 1 1_555 C CA CA . A CA 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc4 D O2B ATP . A ATP 1 1_555 C CA CA . A CA 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc5 D O3B ATP . A ATP 1 1_555 C CA CA . A CA 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc6 D O3A ATP . A ATP 1 1_555 C CA CA . A CA 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1HLU _atom_sites.fract_transf_matrix[1][1] 0.026219 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 376 2 CA CA . D 4 ATP A 1 1 1 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 7.484 20.589 64.023 1 79.98 ? PG ATP 1 A 1 HETATM 2 O O1G ATP . . . D 4 8.889 20.149 63.918 1 75.45 ? O1G ATP 1 A 1 HETATM 3 O O2G ATP . . . D 4 6.868 20.3 65.43 1 78.88 ? O2G ATP 1 A 1 HETATM 4 O O3G ATP . . . D 4 7.131 21.991 63.797 1 82.56 ? O3G ATP 1 A 1 HETATM 5 P PB ATP . . . D 4 4.993 19.289 62.741 1 85.11 ? PB ATP 1 A 1 HETATM 6 O O1B ATP . . . D 4 5.009 18.127 61.756 1 81.08 ? O1B ATP 1 A 1 HETATM 7 O O2B ATP . . . D 4 4.256 20.534 62.353 1 82.83 ? O2B ATP 1 A 1 HETATM 8 O O3B ATP . . . D 4 6.524 19.744 63.051 1 80.75 ? O3B ATP 1 A 1 HETATM 9 P PA ATP . . . D 4 3.495 18.851 65.426 1 79.36 ? PA ATP 1 A 1 HETATM 10 O O1A ATP . . . D 4 2.118 18.356 65.084 1 78.86 ? O1A ATP 1 A 1 HETATM 11 O O2A ATP . . . D 4 3.582 20.18 66.059 1 80.58 ? O2A ATP 1 A 1 HETATM 12 O O3A ATP . . . D 4 4.509 18.694 64.163 1 83.04 ? O3A ATP 1 A 1 HETATM 13 O O5' ATP . . . D 4 4.145 17.842 66.498 1 73.35 ? O5' ATP 1 A 1 HETATM 14 C C5' ATP . . . D 4 3.401 16.676 66.93 1 63.98 ? C5' ATP 1 A 1 HETATM 15 C C4' ATP . . . D 4 4.321 15.487 67.094 1 54.23 ? C4' ATP 1 A 1 HETATM 16 O O4' ATP . . . D 4 3.803 14.65 68.159 1 50.51 ? O4' ATP 1 A 1 HETATM 17 C C3' ATP . . . D 4 4.401 14.55 65.885 1 49.84 ? C3' ATP 1 A 1 HETATM 18 O O3' ATP . . . D 4 5.581 13.765 65.774 1 42.93 ? O3' ATP 1 A 1 HETATM 19 C C2' ATP . . . D 4 3.183 13.656 66.086 1 47.65 ? C2' ATP 1 A 1 HETATM 20 O O2' ATP . . . D 4 3.41 12.361 65.553 1 46.82 ? O2' ATP 1 A 1 HETATM 21 C C1' ATP . . . D 4 3.078 13.561 67.623 1 44.48 ? C1' ATP 1 A 1 HETATM 22 N N9 ATP . . . D 4 1.694 13.679 68.057 1 40.19 ? N9 ATP 1 A 1 HETATM 23 C C8 ATP . . . D 4 0.695 14.383 67.433 1 43.68 ? C8 ATP 1 A 1 HETATM 24 N N7 ATP . . . D 4 -0.486 14.253 67.982 1 46.02 ? N7 ATP 1 A 1 HETATM 25 C C5 ATP . . . D 4 -0.248 13.398 69.048 1 42.39 ? C5 ATP 1 A 1 HETATM 26 C C6 ATP . . . D 4 -1.121 12.872 70.024 1 40.06 ? C6 ATP 1 A 1 HETATM 27 N N6 ATP . . . D 4 -2.437 13.112 70.055 1 41.11 ? N6 ATP 1 A 1 HETATM 28 N N1 ATP . . . D 4 -0.574 12.058 70.953 1 36.82 ? N1 ATP 1 A 1 HETATM 29 C C2 ATP . . . D 4 0.746 11.799 70.902 1 40.44 ? C2 ATP 1 A 1 HETATM 30 N N3 ATP . . . D 4 1.651 12.236 70.034 1 40.51 ? N3 ATP 1 A 1 HETATM 31 C C4 ATP . . . D 4 1.08 13.044 69.122 1 42.19 ? C4 ATP 1 A 1 HETATM 32 H HO2' ATP . . . D 4 2.628 11.818 65.677 1 0 ? HO2' ATP 1 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #