data_1HMP # _model_server_result.job_id 0HaiyFn4KQEWgDFFNebbZQ _model_server_result.datetime_utc '2024-11-18 00:43:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hmp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 1HMP # _exptl.entry_id 1HMP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HMP _cell.length_a 129.5 _cell.length_b 66.45 _cell.length_c 52.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HMP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 129.5 66.45 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 1HMP _atom_sites.fract_transf_matrix[1][1] 0.007722 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015049 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018904 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5GP A 1 300 300 5GP 5GP . D 2 5GP B 1 800 800 5GP 5GP . E 3 HOH A 1 807 807 HOH HOH . E 3 HOH A 2 814 814 HOH HOH . E 3 HOH A 3 821 821 HOH HOH . E 3 HOH A 4 824 824 HOH HOH . E 3 HOH A 5 825 825 HOH HOH . E 3 HOH A 6 826 826 HOH HOH . E 3 HOH A 7 827 827 HOH HOH . E 3 HOH A 8 828 828 HOH HOH . E 3 HOH A 9 841 841 HOH HOH . E 3 HOH A 10 843 843 HOH HOH . E 3 HOH A 11 844 844 HOH HOH . E 3 HOH A 12 849 849 HOH HOH . E 3 HOH A 13 850 850 HOH HOH . E 3 HOH A 14 855 855 HOH HOH . E 3 HOH A 15 857 857 HOH HOH . E 3 HOH A 16 858 858 HOH HOH . E 3 HOH A 17 859 859 HOH HOH . E 3 HOH A 18 860 860 HOH HOH . E 3 HOH A 19 864 864 HOH HOH . E 3 HOH A 20 866 866 HOH HOH . E 3 HOH A 21 872 872 HOH HOH . E 3 HOH A 22 874 874 HOH HOH . E 3 HOH A 23 877 877 HOH HOH . E 3 HOH A 24 878 878 HOH HOH . E 3 HOH A 25 880 880 HOH HOH . E 3 HOH A 26 881 881 HOH HOH . E 3 HOH A 27 882 882 HOH HOH . E 3 HOH A 28 884 884 HOH HOH . E 3 HOH A 29 885 885 HOH HOH . E 3 HOH A 30 886 886 HOH HOH . E 3 HOH A 31 891 891 HOH HOH . E 3 HOH A 32 893 893 HOH HOH . E 3 HOH A 33 896 896 HOH HOH . E 3 HOH A 34 900 900 HOH HOH . E 3 HOH A 35 901 901 HOH HOH . E 3 HOH A 36 902 902 HOH HOH . E 3 HOH A 37 903 903 HOH HOH . E 3 HOH A 38 904 904 HOH HOH . E 3 HOH A 39 905 905 HOH HOH . E 3 HOH A 40 906 906 HOH HOH . E 3 HOH A 41 908 908 HOH HOH . E 3 HOH A 42 909 909 HOH HOH . E 3 HOH A 43 912 912 HOH HOH . E 3 HOH A 44 913 913 HOH HOH . E 3 HOH A 45 914 914 HOH HOH . E 3 HOH A 46 915 915 HOH HOH . E 3 HOH A 47 916 916 HOH HOH . F 3 HOH B 1 801 801 HOH HOH . F 3 HOH B 2 802 802 HOH HOH . F 3 HOH B 3 803 803 HOH HOH . F 3 HOH B 4 804 804 HOH HOH . F 3 HOH B 5 805 805 HOH HOH . F 3 HOH B 6 811 811 HOH HOH . F 3 HOH B 7 812 812 HOH HOH . F 3 HOH B 8 818 818 HOH HOH . F 3 HOH B 9 820 820 HOH HOH . F 3 HOH B 10 823 823 HOH HOH . F 3 HOH B 11 833 833 HOH HOH . F 3 HOH B 12 835 835 HOH HOH . F 3 HOH B 13 836 836 HOH HOH . F 3 HOH B 14 837 837 HOH HOH . F 3 HOH B 15 839 839 HOH HOH . F 3 HOH B 16 845 845 HOH HOH . F 3 HOH B 17 848 848 HOH HOH . F 3 HOH B 18 851 851 HOH HOH . F 3 HOH B 19 853 853 HOH HOH . F 3 HOH B 20 854 854 HOH HOH . F 3 HOH B 21 856 856 HOH HOH . F 3 HOH B 22 861 861 HOH HOH . F 3 HOH B 23 865 865 HOH HOH . F 3 HOH B 24 867 867 HOH HOH . F 3 HOH B 25 868 868 HOH HOH . F 3 HOH B 26 870 870 HOH HOH . F 3 HOH B 27 876 876 HOH HOH . F 3 HOH B 28 879 879 HOH HOH . F 3 HOH B 29 887 887 HOH HOH . F 3 HOH B 30 889 889 HOH HOH . F 3 HOH B 31 890 890 HOH HOH . F 3 HOH B 32 894 894 HOH HOH . F 3 HOH B 33 895 895 HOH HOH . F 3 HOH B 34 898 898 HOH HOH . F 3 HOH B 35 899 899 HOH HOH . F 3 HOH B 36 910 910 HOH HOH . F 3 HOH B 37 911 911 HOH HOH . F 3 HOH B 38 917 917 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . C 2 37.893 49.622 10.663 1 28.68 ? P 5GP 300 A 1 HETATM 2 O O1P 5GP . . . C 2 37.829 50.694 9.664 1 28.43 ? O1P 5GP 300 A 1 HETATM 3 O O2P 5GP . . . C 2 38.881 49.847 11.769 1 24.92 ? O2P 5GP 300 A 1 HETATM 4 O O3P 5GP . . . C 2 36.552 49.144 11.108 1 33.41 ? O3P 5GP 300 A 1 HETATM 5 O O5' 5GP . . . C 2 38.48 48.413 9.803 1 33.01 ? O5' 5GP 300 A 1 HETATM 6 C C5' 5GP . . . C 2 39.134 48.704 8.572 1 30.96 ? C5' 5GP 300 A 1 HETATM 7 C C4' 5GP . . . C 2 39.703 47.466 7.91 1 26.69 ? C4' 5GP 300 A 1 HETATM 8 O O4' 5GP . . . C 2 39.752 47.758 6.493 1 26.27 ? O4' 5GP 300 A 1 HETATM 9 C C3' 5GP . . . C 2 41.151 47.079 8.311 1 25.97 ? C3' 5GP 300 A 1 HETATM 10 O O3' 5GP . . . C 2 41.214 46.004 9.306 1 20.55 ? O3' 5GP 300 A 1 HETATM 11 C C2' 5GP . . . C 2 41.743 46.601 6.992 1 28.89 ? C2' 5GP 300 A 1 HETATM 12 O O2' 5GP . . . C 2 41.498 45.23 6.751 1 27.79 ? O2' 5GP 300 A 1 HETATM 13 C C1' 5GP . . . C 2 41.04 47.496 5.976 1 27.86 ? C1' 5GP 300 A 1 HETATM 14 N N9 5GP . . . C 2 41.778 48.742 5.896 1 30.15 ? N9 5GP 300 A 1 HETATM 15 C C8 5GP . . . C 2 41.678 49.874 6.667 1 22.01 ? C8 5GP 300 A 1 HETATM 16 N N7 5GP . . . C 2 42.676 50.682 6.47 1 26.57 ? N7 5GP 300 A 1 HETATM 17 C C5 5GP . . . C 2 43.535 50.026 5.571 1 28.28 ? C5 5GP 300 A 1 HETATM 18 C C6 5GP . . . C 2 44.749 50.46 4.94 1 20.36 ? C6 5GP 300 A 1 HETATM 19 O O6 5GP . . . C 2 45.303 51.562 5.003 1 14.2 ? O6 5GP 300 A 1 HETATM 20 N N1 5GP . . . C 2 45.287 49.476 4.099 1 25.84 ? N1 5GP 300 A 1 HETATM 21 C C2 5GP . . . C 2 44.694 48.256 3.834 1 23.54 ? C2 5GP 300 A 1 HETATM 22 N N2 5GP . . . C 2 45.318 47.502 2.923 1 18.58 ? N2 5GP 300 A 1 HETATM 23 N N3 5GP . . . C 2 43.532 47.86 4.369 1 23.24 ? N3 5GP 300 A 1 HETATM 24 C C4 5GP . . . C 2 43.012 48.79 5.238 1 29.5 ? C4 5GP 300 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 380 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #