data_1HMY
#
_model_server_result.job_id            SHRabC1Rb6LeTxgv99wzXg 
_model_server_result.datetime_utc      '2025-02-27 16:06:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hmy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":328}' 
#
_entry.id    1HMY 
#
_exptl.entry_id    1HMY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.5 
_cell.angle_gamma         90 
_cell.entry_id            1HMY 
_cell.length_a            55.3 
_cell.length_b            72.7 
_cell.length_c            91 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HMY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 275 n n 
N HN1 SAM sing 276 n n 
N HN2 SAM sing 277 n n 
CA C SAM sing 278 n n 
CA CB SAM sing 279 n n 
CA HA SAM sing 280 n n 
C O SAM doub 281 n n 
C OXT SAM sing 282 n n 
CB CG SAM sing 283 n n 
CB HB1 SAM sing 284 n n 
CB HB2 SAM sing 285 n n 
CG SD SAM sing 286 n n 
CG HG1 SAM sing 287 n n 
CG HG2 SAM sing 288 n n 
SD CE SAM sing 289 n n 
SD C5' SAM sing 290 n n 
CE HE1 SAM sing 291 n n 
CE HE2 SAM sing 292 n n 
CE HE3 SAM sing 293 n n 
C5' C4' SAM sing 294 n n 
C5' "H5'1" SAM sing 295 n n 
C5' "H5'2" SAM sing 296 n n 
C4' O4' SAM sing 297 n n 
C4' C3' SAM sing 298 n n 
C4' H4' SAM sing 299 n n 
O4' C1' SAM sing 300 n n 
C3' O3' SAM sing 301 n n 
C3' C2' SAM sing 302 n n 
C3' H3' SAM sing 303 n n 
O3' HO3' SAM sing 304 n n 
C2' O2' SAM sing 305 n n 
C2' C1' SAM sing 306 n n 
C2' H2' SAM sing 307 n n 
O2' HO2' SAM sing 308 n n 
C1' N9 SAM sing 309 n n 
C1' H1' SAM sing 310 n n 
N9 C8 SAM sing 311 n y 
N9 C4 SAM sing 312 n y 
C8 N7 SAM doub 313 n y 
C8 H8 SAM sing 314 n n 
N7 C5 SAM sing 315 n y 
C5 C6 SAM sing 316 n y 
C5 C4 SAM doub 317 n y 
C6 N6 SAM sing 318 n n 
C6 N1 SAM doub 319 n y 
N6 HN61 SAM sing 320 n n 
N6 HN62 SAM sing 321 n n 
N1 C2 SAM sing 322 n y 
C2 N3 SAM doub 323 n y 
C2 H2 SAM sing 324 n n 
N3 C4 SAM sing 325 n y 
#
_atom_sites.entry_id                     1HMY 
_atom_sites.fract_transf_matrix[1][1]    0.018083 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004009 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013755 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011256 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           SAM 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      328 
_pdbx_nonpoly_scheme.auth_seq_num     328 
_pdbx_nonpoly_scheme.pdb_mon_id       SAM 
_pdbx_nonpoly_scheme.auth_mon_id      SAM 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . B 2 13.651 18.544 26.463 1 7.05 ? N SAM 328 A 1 
HETATM 2 C CA SAM . . . B 2 13.26 17.661 27.495 1 4.76 ? CA SAM 328 A 1 
HETATM 3 C C SAM . . . B 2 13.927 18.452 28.605 1 5.58 ? C SAM 328 A 1 
HETATM 4 O O SAM . . . B 2 13.726 19.734 28.565 1 9.02 ? O SAM 328 A 1 
HETATM 5 O OXT SAM . . . B 2 13.991 17.993 29.811 1 16.71 ? OXT SAM 328 A 1 
HETATM 6 C CB SAM . . . B 2 13.983 16.346 27.205 1 8.59 ? CB SAM 328 A 1 
HETATM 7 C CG SAM . . . B 2 13.14 15.075 27.462 1 9.63 ? CG SAM 328 A 1 
HETATM 8 S SD SAM . . . B 2 13.972 13.542 26.942 1 8.37 ? SD SAM 328 A 1 
HETATM 9 C CE SAM . . . B 2 14.345 13.342 25.194 1 2 ? CE SAM 328 A 1 
HETATM 10 C C5' SAM . . . B 2 12.648 12.449 26.406 1 2 ? C5' SAM 328 A 1 
HETATM 11 C C4' SAM . . . B 2 11.458 12.517 27.245 1 9.56 ? C4' SAM 328 A 1 
HETATM 12 O O4' SAM . . . B 2 10.495 11.632 26.663 1 12.15 ? O4' SAM 328 A 1 
HETATM 13 C C3' SAM . . . B 2 11.686 12.044 28.695 1 16.67 ? C3' SAM 328 A 1 
HETATM 14 O O3' SAM . . . B 2 11.256 13.106 29.585 1 19.5 ? O3' SAM 328 A 1 
HETATM 15 C C2' SAM . . . B 2 10.711 10.82 28.749 1 19.94 ? C2' SAM 328 A 1 
HETATM 16 O O2' SAM . . . B 2 10.166 10.605 30.109 1 19.1 ? O2' SAM 328 A 1 
HETATM 17 C C1' SAM . . . B 2 9.594 11.29 27.755 1 18.99 ? C1' SAM 328 A 1 
HETATM 18 N N9 SAM . . . B 2 8.646 10.185 27.308 1 20.42 ? N9 SAM 328 A 1 
HETATM 19 C C8 SAM . . . B 2 9.037 8.939 26.773 1 19.09 ? C8 SAM 328 A 1 
HETATM 20 N N7 SAM . . . B 2 8.045 8.179 26.357 1 20.88 ? N7 SAM 328 A 1 
HETATM 21 C C5 SAM . . . B 2 6.857 8.96 26.615 1 20.79 ? C5 SAM 328 A 1 
HETATM 22 C C6 SAM . . . B 2 5.457 8.704 26.34 1 14.86 ? C6 SAM 328 A 1 
HETATM 23 N N6 SAM . . . B 2 4.998 7.541 25.766 1 10.25 ? N6 SAM 328 A 1 
HETATM 24 N N1 SAM . . . B 2 4.619 9.689 26.689 1 10.02 ? N1 SAM 328 A 1 
HETATM 25 C C2 SAM . . . B 2 5.065 10.812 27.264 1 12.31 ? C2 SAM 328 A 1 
HETATM 26 N N3 SAM . . . B 2 6.319 11.191 27.588 1 17.16 ? N3 SAM 328 A 1 
HETATM 27 C C4 SAM . . . B 2 7.205 10.192 27.214 1 20.26 ? C4 SAM 328 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           419 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#