data_1HNA # _model_server_result.job_id AEtMKAMijdppRdlrqGMD1w _model_server_result.datetime_utc '2024-11-05 01:30:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hna # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":218}' # _entry.id 1HNA # _exptl.entry_id 1HNA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 473.415 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLUTATHIONE S-(2,4 DINITROBENZENE)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HNA _cell.length_a 81.19 _cell.length_b 83.52 _cell.length_c 70.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HNA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 35.27 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H19 N5 O10 S' _chem_comp.formula_weight 473.415 _chem_comp.id GDN _chem_comp.mon_nstd_flag . _chem_comp.name 'GLUTATHIONE S-(2,4 DINITROBENZENE)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GDN sing 83 n n N1 HN1 GDN sing 84 n n N1 HN2A GDN sing 85 n n CA1 C1 GDN sing 86 n n CA1 CB1 GDN sing 87 n n CA1 HA1 GDN sing 88 n n C1 O11 GDN doub 89 n n C1 O12 GDN sing 90 n n O12 H12 GDN sing 91 n n CB1 CG1 GDN sing 92 n n CB1 HB11 GDN sing 93 n n CB1 HB12 GDN sing 94 n n CG1 CD1 GDN sing 95 n n CG1 HG11 GDN sing 96 n n CG1 HG12 GDN sing 97 n n CD1 OE1 GDN doub 98 n n CD1 N2 GDN sing 99 n n N2 CA2 GDN sing 100 n n N2 HN2 GDN sing 101 n n CA2 C2 GDN sing 102 n n CA2 CB2 GDN sing 103 n n CA2 HA2 GDN sing 104 n n C2 O2 GDN doub 105 n n C2 N3 GDN sing 106 n n CB2 SG2 GDN sing 107 n n CB2 HB21 GDN sing 108 n n CB2 HB22 GDN sing 109 n n SG2 C1' GDN sing 110 n n N3 CA3 GDN sing 111 n n N3 HN3 GDN sing 112 n n CA3 C3 GDN sing 113 n n CA3 HA31 GDN sing 114 n n CA3 HA32 GDN sing 115 n n C3 O31 GDN doub 116 n n C3 O32 GDN sing 117 n n O32 H32 GDN sing 118 n n C1' C2' GDN doub 119 n y C1' C6' GDN sing 120 n y C2' C3' GDN sing 121 n y C2' N2' GDN sing 122 n n C3' C4' GDN doub 123 n y C3' H3' GDN sing 124 n n C4' C5' GDN sing 125 n y C4' N4' GDN sing 126 n n C5' C6' GDN doub 127 n y C5' H5' GDN sing 128 n n C6' H6' GDN sing 129 n n N2' O2A GDN sing 130 n n N2' O2B GDN doub 131 n n N4' O4A GDN sing 132 n n N4' O4B GDN doub 133 n n # _atom_sites.entry_id 1HNA _atom_sites.fract_transf_matrix[1][1] 0.012317 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDN A 1 218 218 GDN GDN . C 3 HOH A 1 219 219 HOH HOH . C 3 HOH A 2 220 220 HOH HOH . C 3 HOH A 3 221 221 HOH HOH . C 3 HOH A 4 222 222 HOH HOH . C 3 HOH A 5 223 223 HOH HOH . C 3 HOH A 6 224 224 HOH HOH . C 3 HOH A 7 225 225 HOH HOH . C 3 HOH A 8 226 226 HOH HOH . C 3 HOH A 9 227 227 HOH HOH . C 3 HOH A 10 228 228 HOH HOH . C 3 HOH A 11 229 229 HOH HOH . C 3 HOH A 12 230 230 HOH HOH . C 3 HOH A 13 231 231 HOH HOH . C 3 HOH A 14 232 232 HOH HOH . C 3 HOH A 15 233 233 HOH HOH . C 3 HOH A 16 234 234 HOH HOH . C 3 HOH A 17 235 235 HOH HOH . C 3 HOH A 18 236 236 HOH HOH . C 3 HOH A 19 237 237 HOH HOH . C 3 HOH A 20 238 238 HOH HOH . C 3 HOH A 21 239 239 HOH HOH . C 3 HOH A 22 240 240 HOH HOH . C 3 HOH A 23 241 241 HOH HOH . C 3 HOH A 24 242 242 HOH HOH . C 3 HOH A 25 243 243 HOH HOH . C 3 HOH A 26 244 244 HOH HOH . C 3 HOH A 27 245 245 HOH HOH . C 3 HOH A 28 246 246 HOH HOH . C 3 HOH A 29 247 247 HOH HOH . C 3 HOH A 30 248 248 HOH HOH . C 3 HOH A 31 249 249 HOH HOH . C 3 HOH A 32 250 250 HOH HOH . C 3 HOH A 33 251 251 HOH HOH . C 3 HOH A 34 252 252 HOH HOH . C 3 HOH A 35 253 253 HOH HOH . C 3 HOH A 36 254 254 HOH HOH . C 3 HOH A 37 255 255 HOH HOH . C 3 HOH A 38 256 256 HOH HOH . C 3 HOH A 39 257 257 HOH HOH . C 3 HOH A 40 258 258 HOH HOH . C 3 HOH A 41 259 259 HOH HOH . C 3 HOH A 42 260 260 HOH HOH . C 3 HOH A 43 261 261 HOH HOH . C 3 HOH A 44 262 262 HOH HOH . C 3 HOH A 45 263 263 HOH HOH . C 3 HOH A 46 264 264 HOH HOH . C 3 HOH A 47 265 265 HOH HOH . C 3 HOH A 48 266 266 HOH HOH . C 3 HOH A 49 267 267 HOH HOH . C 3 HOH A 50 268 268 HOH HOH . C 3 HOH A 51 269 269 HOH HOH . C 3 HOH A 52 270 270 HOH HOH . C 3 HOH A 53 271 271 HOH HOH . C 3 HOH A 54 272 272 HOH HOH . C 3 HOH A 55 273 273 HOH HOH . C 3 HOH A 56 274 274 HOH HOH . C 3 HOH A 57 275 275 HOH HOH . C 3 HOH A 58 276 276 HOH HOH . C 3 HOH A 59 277 277 HOH HOH . C 3 HOH A 60 278 278 HOH HOH . C 3 HOH A 61 279 279 HOH HOH . C 3 HOH A 62 280 280 HOH HOH . C 3 HOH A 63 281 281 HOH HOH . C 3 HOH A 64 282 282 HOH HOH . C 3 HOH A 65 283 283 HOH HOH . C 3 HOH A 66 284 284 HOH HOH . C 3 HOH A 67 285 285 HOH HOH . C 3 HOH A 68 286 286 HOH HOH . C 3 HOH A 69 287 287 HOH HOH . C 3 HOH A 70 288 288 HOH HOH . C 3 HOH A 71 289 289 HOH HOH . C 3 HOH A 72 290 290 HOH HOH . C 3 HOH A 73 291 291 HOH HOH . C 3 HOH A 74 292 292 HOH HOH . C 3 HOH A 75 293 293 HOH HOH . C 3 HOH A 76 294 294 HOH HOH . C 3 HOH A 77 295 295 HOH HOH . C 3 HOH A 78 296 296 HOH HOH . C 3 HOH A 79 297 297 HOH HOH . C 3 HOH A 80 298 298 HOH HOH . C 3 HOH A 81 299 299 HOH HOH . C 3 HOH A 82 300 300 HOH HOH . C 3 HOH A 83 301 301 HOH HOH . C 3 HOH A 84 302 302 HOH HOH . C 3 HOH A 85 303 303 HOH HOH . C 3 HOH A 86 304 304 HOH HOH . C 3 HOH A 87 305 305 HOH HOH . C 3 HOH A 88 306 306 HOH HOH . C 3 HOH A 89 307 307 HOH HOH . C 3 HOH A 90 308 308 HOH HOH . C 3 HOH A 91 309 309 HOH HOH . C 3 HOH A 92 310 310 HOH HOH . C 3 HOH A 93 311 311 HOH HOH . C 3 HOH A 94 312 312 HOH HOH . C 3 HOH A 95 313 313 HOH HOH . C 3 HOH A 96 314 314 HOH HOH . C 3 HOH A 97 315 315 HOH HOH . C 3 HOH A 98 316 316 HOH HOH . C 3 HOH A 99 317 317 HOH HOH . C 3 HOH A 100 318 318 HOH HOH . C 3 HOH A 101 319 319 HOH HOH . C 3 HOH A 102 320 320 HOH HOH . C 3 HOH A 103 321 321 HOH HOH . C 3 HOH A 104 322 322 HOH HOH . C 3 HOH A 105 323 323 HOH HOH . C 3 HOH A 106 324 324 HOH HOH . C 3 HOH A 107 325 325 HOH HOH . C 3 HOH A 108 327 327 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GDN . . . B 2 2.162 19.979 23.252 1 15.48 ? N1 GDN 218 A 1 HETATM 2 C CA1 GDN . . . B 2 2.163 19.966 24.711 1 13.53 ? CA1 GDN 218 A 1 HETATM 3 C C1 GDN . . . B 2 1.109 19.018 25.251 1 11.07 ? C1 GDN 218 A 1 HETATM 4 O O11 GDN . . . B 2 0.21 18.661 24.475 1 12.82 ? O11 GDN 218 A 1 HETATM 5 O O12 GDN . . . B 2 1.199 18.607 26.422 1 12.08 ? O12 GDN 218 A 1 HETATM 6 C CB1 GDN . . . B 2 1.925 21.373 25.237 1 17.09 ? CB1 GDN 218 A 1 HETATM 7 C CG1 GDN . . . B 2 2.342 21.591 26.673 1 18.22 ? CG1 GDN 218 A 1 HETATM 8 C CD1 GDN . . . B 2 2.233 23.039 27.071 1 18.58 ? CD1 GDN 218 A 1 HETATM 9 O OE1 GDN . . . B 2 2.247 23.935 26.225 1 19.38 ? OE1 GDN 218 A 1 HETATM 10 N N2 GDN . . . B 2 2.024 23.268 28.356 1 20.24 ? N2 GDN 218 A 1 HETATM 11 C CA2 GDN . . . B 2 1.893 24.618 28.865 1 21.95 ? CA2 GDN 218 A 1 HETATM 12 C C2 GDN . . . B 2 2.907 24.883 29.985 1 23.74 ? C2 GDN 218 A 1 HETATM 13 O O2 GDN . . . B 2 2.686 25.73 30.84 1 26.21 ? O2 GDN 218 A 1 HETATM 14 C CB2 GDN . . . B 2 0.461 24.843 29.371 1 25.1 ? CB2 GDN 218 A 1 HETATM 15 S SG2 GDN . . . B 2 -0.845 24.763 28.096 1 27.76 ? SG2 GDN 218 A 1 HETATM 16 N N3 GDN . . . B 2 4.036 24.193 29.956 1 22.33 ? N3 GDN 218 A 1 HETATM 17 C CA3 GDN . . . B 2 5.088 24.338 30.952 1 24.26 ? CA3 GDN 218 A 1 HETATM 18 C C3 GDN . . . B 2 6.279 25.061 30.362 1 24.42 ? C3 GDN 218 A 1 HETATM 19 O O31 GDN . . . B 2 6.134 25.689 29.298 1 27.85 ? O31 GDN 218 A 1 HETATM 20 O O32 GDN . . . B 2 7.361 25.01 30.97 1 26.22 ? O32 GDN 218 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #