data_1HNB
#
_model_server_result.job_id            zchZTXmaVCYCso4FuoYQjQ 
_model_server_result.datetime_utc      '2024-10-13 10:24:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hnb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":218}' 
#
_entry.id    1HNB 
#
_exptl.entry_id    1HNB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              473.415 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLUTATHIONE S-(2,4 DINITROBENZENE)' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1HNB 
_cell.length_a            57 
_cell.length_b            86.08 
_cell.length_c            105.85 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HNB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C16 H19 N5 O10 S' 
_chem_comp.formula_weight    473.415 
_chem_comp.id                GDN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'GLUTATHIONE S-(2,4 DINITROBENZENE)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 CA1 GDN sing 83 n n 
N1 HN1 GDN sing 84 n n 
N1 HN2A GDN sing 85 n n 
CA1 C1 GDN sing 86 n n 
CA1 CB1 GDN sing 87 n n 
CA1 HA1 GDN sing 88 n n 
C1 O11 GDN doub 89 n n 
C1 O12 GDN sing 90 n n 
O12 H12 GDN sing 91 n n 
CB1 CG1 GDN sing 92 n n 
CB1 HB11 GDN sing 93 n n 
CB1 HB12 GDN sing 94 n n 
CG1 CD1 GDN sing 95 n n 
CG1 HG11 GDN sing 96 n n 
CG1 HG12 GDN sing 97 n n 
CD1 OE1 GDN doub 98 n n 
CD1 N2 GDN sing 99 n n 
N2 CA2 GDN sing 100 n n 
N2 HN2 GDN sing 101 n n 
CA2 C2 GDN sing 102 n n 
CA2 CB2 GDN sing 103 n n 
CA2 HA2 GDN sing 104 n n 
C2 O2 GDN doub 105 n n 
C2 N3 GDN sing 106 n n 
CB2 SG2 GDN sing 107 n n 
CB2 HB21 GDN sing 108 n n 
CB2 HB22 GDN sing 109 n n 
SG2 C1' GDN sing 110 n n 
N3 CA3 GDN sing 111 n n 
N3 HN3 GDN sing 112 n n 
CA3 C3 GDN sing 113 n n 
CA3 HA31 GDN sing 114 n n 
CA3 HA32 GDN sing 115 n n 
C3 O31 GDN doub 116 n n 
C3 O32 GDN sing 117 n n 
O32 H32 GDN sing 118 n n 
C1' C2' GDN doub 119 n y 
C1' C6' GDN sing 120 n y 
C2' C3' GDN sing 121 n y 
C2' N2' GDN sing 122 n n 
C3' C4' GDN doub 123 n y 
C3' H3' GDN sing 124 n n 
C4' C5' GDN sing 125 n y 
C4' N4' GDN sing 126 n n 
C5' C6' GDN doub 127 n y 
C5' H5' GDN sing 128 n n 
C6' H6' GDN sing 129 n n 
N2' O2A GDN sing 130 n n 
N2' O2B GDN doub 131 n n 
N4' O4A GDN sing 132 n n 
N4' O4B GDN doub 133 n n 
#
_atom_sites.entry_id                     1HNB 
_atom_sites.fract_transf_matrix[1][1]    0.017544 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011617 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009447 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GDN A 1 218 218 GDN GDN . 
D 2 GDN B 1 218 218 GDN GDN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 GDN . . . D 2 13.425 24.347 27.854 1 14.93 ? N1 GDN 218 B 1 
HETATM 2 C CA1 GDN . . . D 2 13.869 25.72 28.062 1 6.51 ? CA1 GDN 218 B 1 
HETATM 3 C C1 GDN . . . D 2 12.685 26.682 28.162 1 6 ? C1 GDN 218 B 1 
HETATM 4 O O11 GDN . . . D 2 12.592 27.391 29.182 1 8.82 ? O11 GDN 218 B 1 
HETATM 5 O O12 GDN . . . D 2 11.86 26.716 27.227 1 10.73 ? O12 GDN 218 B 1 
HETATM 6 C CB1 GDN . . . D 2 14.809 26.153 26.933 1 6.38 ? CB1 GDN 218 B 1 
HETATM 7 C CG1 GDN . . . D 2 14.278 25.874 25.541 1 6 ? CG1 GDN 218 B 1 
HETATM 8 C CD1 GDN . . . D 2 15.063 26.57 24.451 1 7.98 ? CD1 GDN 218 B 1 
HETATM 9 O OE1 GDN . . . D 2 14.942 27.787 24.296 1 8.6 ? OE1 GDN 218 B 1 
HETATM 10 N N2 GDN . . . D 2 16.087 25.887 23.951 1 11.56 ? N2 GDN 218 B 1 
HETATM 11 C CA2 GDN . . . D 2 16.911 26.439 22.877 1 18.84 ? CA2 GDN 218 B 1 
HETATM 12 C C2 GDN . . . D 2 16.599 25.64 21.614 1 16.9 ? C2 GDN 218 B 1 
HETATM 13 O O2 GDN . . . D 2 17.367 24.761 21.226 1 25.11 ? O2 GDN 218 B 1 
HETATM 14 C CB2 GDN . . . D 2 18.417 26.358 23.21 1 16.42 ? CB2 GDN 218 B 1 
HETATM 15 S SG2 GDN . . . D 2 19.007 27.343 24.635 1 18.12 ? SG2 GDN 218 B 1 
HETATM 16 N N3 GDN . . . D 2 15.335 25.701 21.22 1 12.37 ? N3 GDN 218 B 1 
HETATM 17 C CA3 GDN . . . D 2 14.799 25.021 20.046 1 14.6 ? CA3 GDN 218 B 1 
HETATM 18 C C3 GDN . . . D 2 13.288 25.112 20.192 1 19.27 ? C3 GDN 218 B 1 
HETATM 19 O O31 GDN . . . D 2 12.8 25.027 21.343 1 18.96 ? O31 GDN 218 B 1 
HETATM 20 O O32 GDN . . . D 2 12.589 25.283 19.167 1 17.74 ? O32 GDN 218 B 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#