data_1HPC
#
_model_server_result.job_id            CmKhspixA5phSBekc3Wsxw 
_model_server_result.datetime_utc      '2025-02-05 12:01:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hpc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":132}' 
#
_entry.id    1HPC 
#
_exptl.entry_id    1HPC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              206.326 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'LIPOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1HPC 
_cell.length_a            57.3 
_cell.length_b            57.3 
_cell.length_c            136.8 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HPC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 63 A LYS 63 1_555 C C1 LPB . A LPB 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? 
covale ? covale2 B NZ LYS 63 B LYS 63 1_555 D C1 LPA . B LPA 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C8 H14 O2 S2' 
_chem_comp.formula_weight    206.326 
_chem_comp.id                LPA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'LIPOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '5-[(3R)-1,2-dithiolan-3-yl]pentanoic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 LPA sing 168 n n 
C1 O2 LPA doub 169 n n 
C1 O1 LPA sing 170 n n 
O1 HO1 LPA sing 171 n n 
C3 C2 LPA sing 172 n n 
C2 H2 LPA sing 173 n n 
C2 H2A LPA sing 174 n n 
C4 C3 LPA sing 175 n n 
C3 H3 LPA sing 176 n n 
C3 H3A LPA sing 177 n n 
C5 C4 LPA sing 178 n n 
C4 H4 LPA sing 179 n n 
C4 H4A LPA sing 180 n n 
C6 C5 LPA sing 181 n n 
C5 H5 LPA sing 182 n n 
C5 H5A LPA sing 183 n n 
C7 C6 LPA sing 184 n n 
C6 S6 LPA sing 185 n n 
C6 H6 LPA sing 186 n n 
S8 S6 LPA sing 187 n n 
C8 C7 LPA sing 188 n n 
C7 H7 LPA sing 189 n n 
C7 H7A LPA sing 190 n n 
C8 S8 LPA sing 191 n n 
C8 H8 LPA sing 192 n n 
C8 H8A LPA sing 193 n n 
#
_atom_sites.entry_id                     1HPC 
_atom_sites.fract_transf_matrix[1][1]    0.017452 
_atom_sites.fract_transf_matrix[1][2]    0.010076 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020152 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00731 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LPB A 1 132 63 LPB LPA . 
D 3 LPA B 1 132 63 LPA LPA . 
E 4 HOH A 1 133 1 HOH HOH . 
E 4 HOH A 2 134 2 HOH HOH . 
E 4 HOH A 3 135 3 HOH HOH . 
E 4 HOH A 4 136 4 HOH HOH . 
E 4 HOH A 5 137 5 HOH HOH . 
E 4 HOH A 6 138 6 HOH HOH . 
E 4 HOH A 7 139 7 HOH HOH . 
E 4 HOH A 8 140 8 HOH HOH . 
E 4 HOH A 9 141 9 HOH HOH . 
E 4 HOH A 10 142 10 HOH HOH . 
E 4 HOH A 11 143 11 HOH HOH . 
E 4 HOH A 12 144 12 HOH HOH . 
E 4 HOH A 13 145 13 HOH HOH . 
E 4 HOH A 14 146 14 HOH HOH . 
E 4 HOH A 15 147 15 HOH HOH . 
E 4 HOH A 16 148 16 HOH HOH . 
E 4 HOH A 17 149 17 HOH HOH . 
E 4 HOH A 18 150 18 HOH HOH . 
E 4 HOH A 19 151 19 HOH HOH . 
E 4 HOH A 20 152 20 HOH HOH . 
E 4 HOH A 21 153 21 HOH HOH . 
E 4 HOH A 22 154 22 HOH HOH . 
E 4 HOH A 23 155 23 HOH HOH . 
E 4 HOH A 24 156 24 HOH HOH . 
E 4 HOH A 25 157 25 HOH HOH . 
E 4 HOH A 26 158 26 HOH HOH . 
E 4 HOH A 27 159 27 HOH HOH . 
E 4 HOH A 28 160 28 HOH HOH . 
E 4 HOH A 29 161 29 HOH HOH . 
E 4 HOH A 30 162 30 HOH HOH . 
E 4 HOH A 31 163 31 HOH HOH . 
E 4 HOH A 32 164 32 HOH HOH . 
E 4 HOH A 33 165 33 HOH HOH . 
E 4 HOH A 34 166 34 HOH HOH . 
E 4 HOH A 35 167 35 HOH HOH . 
E 4 HOH A 36 168 36 HOH HOH . 
E 4 HOH A 37 169 37 HOH HOH . 
E 4 HOH A 38 170 38 HOH HOH . 
E 4 HOH A 39 171 39 HOH HOH . 
E 4 HOH A 40 172 40 HOH HOH . 
E 4 HOH A 41 173 41 HOH HOH . 
E 4 HOH A 42 174 42 HOH HOH . 
E 4 HOH A 43 175 43 HOH HOH . 
E 4 HOH A 44 176 44 HOH HOH . 
E 4 HOH A 45 177 45 HOH HOH . 
E 4 HOH A 46 178 46 HOH HOH . 
E 4 HOH A 47 179 47 HOH HOH . 
E 4 HOH A 48 180 48 HOH HOH . 
E 4 HOH A 49 181 49 HOH HOH . 
E 4 HOH A 50 182 50 HOH HOH . 
E 4 HOH A 51 183 51 HOH HOH . 
E 4 HOH A 52 184 53 HOH HOH . 
E 4 HOH A 53 185 56 HOH HOH . 
E 4 HOH A 54 186 57 HOH HOH . 
E 4 HOH A 55 187 58 HOH HOH . 
E 4 HOH A 56 188 59 HOH HOH . 
E 4 HOH A 57 189 60 HOH HOH . 
E 4 HOH A 58 190 61 HOH HOH . 
E 4 HOH A 59 191 62 HOH HOH . 
E 4 HOH A 60 192 63 HOH HOH . 
E 4 HOH A 61 193 64 HOH HOH . 
E 4 HOH A 62 194 65 HOH HOH . 
E 4 HOH A 63 195 66 HOH HOH . 
E 4 HOH A 64 196 67 HOH HOH . 
E 4 HOH A 65 197 68 HOH HOH . 
E 4 HOH A 66 198 69 HOH HOH . 
E 4 HOH A 67 199 70 HOH HOH . 
E 4 HOH A 68 200 71 HOH HOH . 
E 4 HOH A 69 201 72 HOH HOH . 
E 4 HOH A 70 202 74 HOH HOH . 
E 4 HOH A 71 203 75 HOH HOH . 
E 4 HOH A 72 204 77 HOH HOH . 
E 4 HOH A 73 205 78 HOH HOH . 
E 4 HOH A 74 206 79 HOH HOH . 
E 4 HOH A 75 207 80 HOH HOH . 
E 4 HOH A 76 208 81 HOH HOH . 
E 4 HOH A 77 209 82 HOH HOH . 
E 4 HOH A 78 210 83 HOH HOH . 
E 4 HOH A 79 211 84 HOH HOH . 
E 4 HOH A 80 212 85 HOH HOH . 
E 4 HOH A 81 213 86 HOH HOH . 
E 4 HOH A 82 214 87 HOH HOH . 
E 4 HOH A 83 215 88 HOH HOH . 
E 4 HOH A 84 216 89 HOH HOH . 
E 4 HOH A 85 217 90 HOH HOH . 
E 4 HOH A 86 218 91 HOH HOH . 
E 4 HOH A 87 219 92 HOH HOH . 
E 4 HOH A 88 220 93 HOH HOH . 
E 4 HOH A 89 221 94 HOH HOH . 
E 4 HOH A 90 222 95 HOH HOH . 
E 4 HOH A 91 223 96 HOH HOH . 
E 4 HOH A 92 224 97 HOH HOH . 
E 4 HOH A 93 225 98 HOH HOH . 
E 4 HOH A 94 226 99 HOH HOH . 
E 4 HOH A 95 227 153 HOH HOH . 
F 4 HOH B 1 133 73 HOH HOH . 
F 4 HOH B 2 134 76 HOH HOH . 
F 4 HOH B 3 135 1 HOH HOH . 
F 4 HOH B 4 136 2 HOH HOH . 
F 4 HOH B 5 137 3 HOH HOH . 
F 4 HOH B 6 138 4 HOH HOH . 
F 4 HOH B 7 139 5 HOH HOH . 
F 4 HOH B 8 140 6 HOH HOH . 
F 4 HOH B 9 141 7 HOH HOH . 
F 4 HOH B 10 142 8 HOH HOH . 
F 4 HOH B 11 143 9 HOH HOH . 
F 4 HOH B 12 144 10 HOH HOH . 
F 4 HOH B 13 145 11 HOH HOH . 
F 4 HOH B 14 146 12 HOH HOH . 
F 4 HOH B 15 147 13 HOH HOH . 
F 4 HOH B 16 148 14 HOH HOH . 
F 4 HOH B 17 149 15 HOH HOH . 
F 4 HOH B 18 150 16 HOH HOH . 
F 4 HOH B 19 151 17 HOH HOH . 
F 4 HOH B 20 152 18 HOH HOH . 
F 4 HOH B 21 153 19 HOH HOH . 
F 4 HOH B 22 154 20 HOH HOH . 
F 4 HOH B 23 155 21 HOH HOH . 
F 4 HOH B 24 156 22 HOH HOH . 
F 4 HOH B 25 157 23 HOH HOH . 
F 4 HOH B 26 158 24 HOH HOH . 
F 4 HOH B 27 159 25 HOH HOH . 
F 4 HOH B 28 160 26 HOH HOH . 
F 4 HOH B 29 161 27 HOH HOH . 
F 4 HOH B 30 162 28 HOH HOH . 
F 4 HOH B 31 163 29 HOH HOH . 
F 4 HOH B 32 164 30 HOH HOH . 
F 4 HOH B 33 165 31 HOH HOH . 
F 4 HOH B 34 166 32 HOH HOH . 
F 4 HOH B 35 167 33 HOH HOH . 
F 4 HOH B 36 168 34 HOH HOH . 
F 4 HOH B 37 169 35 HOH HOH . 
F 4 HOH B 38 170 36 HOH HOH . 
F 4 HOH B 39 171 37 HOH HOH . 
F 4 HOH B 40 172 38 HOH HOH . 
F 4 HOH B 41 173 39 HOH HOH . 
F 4 HOH B 42 174 40 HOH HOH . 
F 4 HOH B 43 175 41 HOH HOH . 
F 4 HOH B 44 176 42 HOH HOH . 
F 4 HOH B 45 177 43 HOH HOH . 
F 4 HOH B 46 178 44 HOH HOH . 
F 4 HOH B 47 179 45 HOH HOH . 
F 4 HOH B 48 180 46 HOH HOH . 
F 4 HOH B 49 181 47 HOH HOH . 
F 4 HOH B 50 182 48 HOH HOH . 
F 4 HOH B 51 183 49 HOH HOH . 
F 4 HOH B 52 184 50 HOH HOH . 
F 4 HOH B 53 185 51 HOH HOH . 
F 4 HOH B 54 186 52 HOH HOH . 
F 4 HOH B 55 187 54 HOH HOH . 
F 4 HOH B 56 188 55 HOH HOH . 
F 4 HOH B 57 189 100 HOH HOH . 
F 4 HOH B 58 190 101 HOH HOH . 
F 4 HOH B 59 191 102 HOH HOH . 
F 4 HOH B 60 192 103 HOH HOH . 
F 4 HOH B 61 193 104 HOH HOH . 
F 4 HOH B 62 194 105 HOH HOH . 
F 4 HOH B 63 195 106 HOH HOH . 
F 4 HOH B 64 196 107 HOH HOH . 
F 4 HOH B 65 197 108 HOH HOH . 
F 4 HOH B 66 198 109 HOH HOH . 
F 4 HOH B 67 199 110 HOH HOH . 
F 4 HOH B 68 200 111 HOH HOH . 
F 4 HOH B 69 201 112 HOH HOH . 
F 4 HOH B 70 202 113 HOH HOH . 
F 4 HOH B 71 203 114 HOH HOH . 
F 4 HOH B 72 204 115 HOH HOH . 
F 4 HOH B 73 205 116 HOH HOH . 
F 4 HOH B 74 206 117 HOH HOH . 
F 4 HOH B 75 207 118 HOH HOH . 
F 4 HOH B 76 208 119 HOH HOH . 
F 4 HOH B 77 209 120 HOH HOH . 
F 4 HOH B 78 210 121 HOH HOH . 
F 4 HOH B 79 211 122 HOH HOH . 
F 4 HOH B 80 212 123 HOH HOH . 
F 4 HOH B 81 213 124 HOH HOH . 
F 4 HOH B 82 214 125 HOH HOH . 
F 4 HOH B 83 215 126 HOH HOH . 
F 4 HOH B 84 216 127 HOH HOH . 
F 4 HOH B 85 217 128 HOH HOH . 
F 4 HOH B 86 218 129 HOH HOH . 
F 4 HOH B 87 219 130 HOH HOH . 
F 4 HOH B 88 220 131 HOH HOH . 
F 4 HOH B 89 221 132 HOH HOH . 
F 4 HOH B 90 222 133 HOH HOH . 
F 4 HOH B 91 223 134 HOH HOH . 
F 4 HOH B 92 224 135 HOH HOH . 
F 4 HOH B 93 225 136 HOH HOH . 
F 4 HOH B 94 226 137 HOH HOH . 
F 4 HOH B 95 227 138 HOH HOH . 
F 4 HOH B 96 228 139 HOH HOH . 
F 4 HOH B 97 229 140 HOH HOH . 
F 4 HOH B 98 230 141 HOH HOH . 
F 4 HOH B 99 231 142 HOH HOH . 
F 4 HOH B 100 232 143 HOH HOH . 
F 4 HOH B 101 233 144 HOH HOH . 
F 4 HOH B 102 234 145 HOH HOH . 
F 4 HOH B 103 235 146 HOH HOH . 
F 4 HOH B 104 236 147 HOH HOH . 
F 4 HOH B 105 237 148 HOH HOH . 
F 4 HOH B 106 238 149 HOH HOH . 
F 4 HOH B 107 239 150 HOH HOH . 
F 4 HOH B 108 240 151 HOH HOH . 
F 4 HOH B 109 241 152 HOH HOH . 
F 4 HOH B 110 242 154 HOH HOH . 
F 4 HOH B 111 243 155 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LPA . . . D 3 13.77 -8.687 9.356 1 44.09 ? C1 LPA 132 B 1 
HETATM 2 C C2 LPA . . . D 3 12.35 -8.147 9.419 1 44.68 ? C2 LPA 132 B 1 
HETATM 3 O O2 LPA . . . D 3 14.332 -9.131 8.382 1 46.19 ? O2 LPA 132 B 1 
HETATM 4 C C3 LPA . . . D 3 11.781 -7.507 8.143 1 44.1 ? C3 LPA 132 B 1 
HETATM 5 C C4 LPA . . . D 3 11.794 -5.992 8.296 1 42.46 ? C4 LPA 132 B 1 
HETATM 6 C C5 LPA . . . D 3 12.434 -5.319 7.089 1 40.54 ? C5 LPA 132 B 1 
HETATM 7 C C6 LPA . . . D 3 11.683 -4.087 6.599 1 41.41 ? C6 LPA 132 B 1 
HETATM 8 S S6 LPA . . . D 3 12.115 -3.429 4.941 1 46.74 ? S6 LPA 132 B 1 
HETATM 9 C C7 LPA . . . D 3 10.185 -3.986 6.853 1 42.12 ? C7 LPA 132 B 1 
HETATM 10 C C8 LPA . . . D 3 9.747 -2.673 6.285 1 43.64 ? C8 LPA 132 B 1 
HETATM 11 S S8 LPA . . . D 3 10.268 -2.607 4.577 1 49.18 ? S8 LPA 132 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           11 
#