data_1HPX # _model_server_result.job_id yH1ztbWv67ebCAm_jhpk2A _model_server_result.datetime_utc '2024-11-24 18:57:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hpx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 1HPX # _exptl.entry_id 1HPX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 667.839 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-N-tert-butyl-3-[(2S,3S)-2-hydroxy-3-({N-[(isoquinolin-5-yloxy)acetyl]-S-methyl-L-cysteinyl}amino)-4-phenylbutanoyl]-1,3-thiazolidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HPX _cell.length_a 51.9 _cell.length_b 59.1 _cell.length_c 62.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HPX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H41 N5 O6 S2' _chem_comp.formula_weight 667.839 _chem_comp.id KNI _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-N-tert-butyl-3-[(2S,3S)-2-hydroxy-3-({N-[(isoquinolin-5-yloxy)acetyl]-S-methyl-L-cysteinyl}amino)-4-phenylbutanoyl]-1,3-thiazolidine-4-carboxamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms KNI-272;(N-TERT-BUTYL-THIOPROLINE)-(5-ISOQUINOLYLOXYACETYL-METHYLTHIOALANINE)-ALLOPHENYLNORSTATINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 KNI sing 173 n y C1 N1 KNI doub 174 n y C1 H1 KNI sing 175 n n C2 C3 KNI doub 176 n y C2 H2 KNI sing 177 n n C3 C4 KNI sing 178 n y C3 C6 KNI sing 179 n y C4 C5 KNI doub 180 n y C4 C9 KNI sing 181 n y C5 N1 KNI sing 182 n y C5 H5 KNI sing 183 n n C6 C7 KNI doub 184 n y C6 O1 KNI sing 185 n n C7 C8 KNI sing 186 n y C7 H7 KNI sing 187 n n C8 C9 KNI doub 188 n y C8 H8 KNI sing 189 n n C9 H9 KNI sing 190 n n C10 C11 KNI sing 191 n n C10 O1 KNI sing 192 n n C10 H101 KNI sing 193 n n C10 H102 KNI sing 194 n n C11 N2 KNI sing 195 n n C11 O3 KNI doub 196 n n C12 C26 KNI sing 197 n n C12 S1 KNI sing 198 n n C12 H121 KNI sing 199 n n C12 H122 KNI sing 200 n n C13 C26 KNI sing 201 n n C13 N3 KNI sing 202 n n C13 O6 KNI doub 203 n n C14 C15 KNI sing 204 n n C14 C16 KNI sing 205 n n C14 N3 KNI sing 206 n n C14 H14 KNI sing 207 n n C15 C17 KNI sing 208 n n C15 O2 KNI sing 209 n n C15 H15 KNI sing 210 n n C16 C28 KNI sing 211 n n C16 H161 KNI sing 212 n n C16 H162 KNI sing 213 n n C17 N4 KNI sing 214 n n C17 O4 KNI doub 215 n n C18 C19 KNI sing 216 n n C18 C21 KNI sing 217 n n C18 N4 KNI sing 218 n n C18 H18 KNI sing 219 n n C19 S2 KNI sing 220 n n C19 H191 KNI sing 221 n n C19 H192 KNI sing 222 n n C20 N4 KNI sing 223 n n C20 S2 KNI sing 224 n n C20 H201 KNI sing 225 n n C20 H202 KNI sing 226 n n C21 N5 KNI sing 227 n n C21 O5 KNI doub 228 n n C22 C23 KNI sing 229 n n C22 C24 KNI sing 230 n n C22 C25 KNI sing 231 n n C22 N5 KNI sing 232 n n C23 H231 KNI sing 233 n n C23 H232 KNI sing 234 n n C23 H233 KNI sing 235 n n C24 H241 KNI sing 236 n n C24 H242 KNI sing 237 n n C24 H243 KNI sing 238 n n C25 H251 KNI sing 239 n n C25 H252 KNI sing 240 n n C25 H253 KNI sing 241 n n C26 N2 KNI sing 242 n n C26 H26 KNI sing 243 n n C27 S1 KNI sing 244 n n C27 H271 KNI sing 245 n n C27 H272 KNI sing 246 n n C27 H273 KNI sing 247 n n C28 C29 KNI doub 248 n y C28 C33 KNI sing 249 n y C29 C30 KNI sing 250 n y C29 H29 KNI sing 251 n n C30 C31 KNI doub 252 n y C30 H30 KNI sing 253 n n C31 C32 KNI sing 254 n y C31 H31 KNI sing 255 n n C32 C33 KNI doub 256 n y C32 H32 KNI sing 257 n n C33 H33 KNI sing 258 n n N2 HN2 KNI sing 259 n n N3 HN3 KNI sing 260 n n N5 HN5 KNI sing 261 n n O2 HO2 KNI sing 262 n n # _atom_sites.entry_id 1HPX _atom_sites.fract_transf_matrix[1][1] 0.019268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 KNI B 1 900 900 KNI KNI . D 3 HOH A 1 426 426 HOH HOH . E 3 HOH B 1 301 301 HOH HOH . E 3 HOH B 2 406 406 HOH HOH . E 3 HOH B 3 566 566 HOH HOH . E 3 HOH B 4 607 607 HOH HOH . E 3 HOH B 5 608 608 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KNI . . . C 2 6.848 1.181 6.159 1 31.81 ? C1 KNI 900 B 1 HETATM 2 C C2 KNI . . . C 2 6.303 2.017 7.116 1 31.46 ? C2 KNI 900 B 1 HETATM 3 C C3 KNI . . . C 2 6.886 3.273 7.363 1 30.02 ? C3 KNI 900 B 1 HETATM 4 C C4 KNI . . . C 2 7.991 3.592 6.613 1 31.19 ? C4 KNI 900 B 1 HETATM 5 C C5 KNI . . . C 2 8.468 2.649 5.645 1 31.22 ? C5 KNI 900 B 1 HETATM 6 C C6 KNI . . . C 2 6.352 4.17 8.347 1 28.81 ? C6 KNI 900 B 1 HETATM 7 C C7 KNI . . . C 2 7 5.388 8.521 1 29.66 ? C7 KNI 900 B 1 HETATM 8 C C8 KNI . . . C 2 8.109 5.715 7.774 1 32.04 ? C8 KNI 900 B 1 HETATM 9 C C9 KNI . . . C 2 8.629 4.846 6.816 1 32.83 ? C9 KNI 900 B 1 HETATM 10 C C10 KNI . . . C 2 5.14 4.375 10.352 1 22.94 ? C10 KNI 900 B 1 HETATM 11 C C11 KNI . . . C 2 4.067 3.683 11.106 1 20.49 ? C11 KNI 900 B 1 HETATM 12 N N1 KNI . . . C 2 7.907 1.459 5.427 1 32.44 ? N1 KNI 900 B 1 HETATM 13 O O1 KNI . . . C 2 5.235 3.791 9.082 1 25.21 ? O1 KNI 900 B 1 HETATM 14 O O3 KNI . . . C 2 3.327 4.297 11.852 1 22.09 ? O3 KNI 900 B 1 HETATM 15 N N2 KNI . . . C 2 3.955 2.384 10.893 1 21.41 ? N2 KNI 900 B 1 HETATM 16 C C26 KNI . . . C 2 3.028 1.603 11.696 1 22.03 ? C26 KNI 900 B 1 HETATM 17 C C12 KNI . . . C 2 1.944 1.001 10.835 1 24.82 ? C12 KNI 900 B 1 HETATM 18 S S1 KNI . . . C 2 0.668 0.435 11.993 1 31.66 ? S1 KNI 900 B 1 HETATM 19 C C27 KNI . . . C 2 -0.158 2.056 12.16 1 28.64 ? C27 KNI 900 B 1 HETATM 20 C C13 KNI . . . C 2 3.783 0.542 12.457 1 19.38 ? C13 KNI 900 B 1 HETATM 21 O O6 KNI . . . C 2 3.758 -0.629 12.111 1 19.61 ? O6 KNI 900 B 1 HETATM 22 C C17 KNI . . . C 2 5.339 -1.386 16.33 1 19.01 ? C17 KNI 900 B 1 HETATM 23 N N3 KNI . . . C 2 4.496 0.982 13.492 1 17.23 ? N3 KNI 900 B 1 HETATM 24 O O4 KNI . . . C 2 6.324 -1.234 17.045 1 17.77 ? O4 KNI 900 B 1 HETATM 25 C C15 KNI . . . C 2 4.705 -0.18 15.642 1 17.64 ? C15 KNI 900 B 1 HETATM 26 C C28 KNI . . . C 2 7.372 0.9 12.976 1 19.72 ? C28 KNI 900 B 1 HETATM 27 C C16 KNI . . . C 2 6.775 0.654 14.347 1 17.12 ? C16 KNI 900 B 1 HETATM 28 C C31 KNI . . . C 2 8.465 1.319 10.446 1 20.3 ? C31 KNI 900 B 1 HETATM 29 C C14 KNI . . . C 2 5.35 0.082 14.274 1 18.12 ? C14 KNI 900 B 1 HETATM 30 O O2 KNI . . . C 2 4.949 0.934 16.427 1 17.78 ? O2 KNI 900 B 1 HETATM 31 C C29 KNI . . . C 2 7.401 2.166 12.426 1 20.68 ? C29 KNI 900 B 1 HETATM 32 C C33 KNI . . . C 2 7.899 -0.146 12.245 1 20.35 ? C33 KNI 900 B 1 HETATM 33 C C30 KNI . . . C 2 7.949 2.368 11.171 1 21.38 ? C30 KNI 900 B 1 HETATM 34 C C32 KNI . . . C 2 8.437 0.066 10.993 1 20.29 ? C32 KNI 900 B 1 HETATM 35 N N4 KNI . . . C 2 4.742 -2.565 16.064 1 20.71 ? N4 KNI 900 B 1 HETATM 36 C C20 KNI . . . C 2 3.544 -2.664 15.224 1 20.81 ? C20 KNI 900 B 1 HETATM 37 C C18 KNI . . . C 2 5.373 -3.819 16.506 1 19.84 ? C18 KNI 900 B 1 HETATM 38 C C19 KNI . . . C 2 4.427 -4.993 16.258 1 18.96 ? C19 KNI 900 B 1 HETATM 39 S S2 KNI . . . C 2 3.263 -4.44 14.973 1 25.22 ? S2 KNI 900 B 1 HETATM 40 C C21 KNI . . . C 2 6.653 -3.979 15.741 1 19.96 ? C21 KNI 900 B 1 HETATM 41 O O5 KNI . . . C 2 6.746 -3.574 14.588 1 21.99 ? O5 KNI 900 B 1 HETATM 42 N N5 KNI . . . C 2 7.637 -4.575 16.403 1 16.49 ? N5 KNI 900 B 1 HETATM 43 C C22 KNI . . . C 2 9.013 -4.639 15.892 1 17.46 ? C22 KNI 900 B 1 HETATM 44 C C23 KNI . . . C 2 9.556 -3.249 15.542 1 17.61 ? C23 KNI 900 B 1 HETATM 45 C C24 KNI . . . C 2 9.097 -5.567 14.678 1 18.08 ? C24 KNI 900 B 1 HETATM 46 C C25 KNI . . . C 2 9.88 -5.183 17.021 1 17.58 ? C25 KNI 900 B 1 HETATM 47 H H2 KNI . . . C 2 5.462 1.763 7.709 1 15 ? H2 KNI 900 B 1 HETATM 48 H H1 KNI . . . C 2 6.383 0.216 6.001 1 15 ? H1 KNI 900 B 1 HETATM 49 H H5 KNI . . . C 2 9.336 2.914 5.059 1 15 ? H5 KNI 900 B 1 HETATM 50 H H7 KNI . . . C 2 6.644 6.089 9.258 1 15 ? H7 KNI 900 B 1 HETATM 51 H H8 KNI . . . C 2 8.607 6.66 7.934 1 15 ? H8 KNI 900 B 1 HETATM 52 H H9 KNI . . . C 2 9.509 5.125 6.251 1 15 ? H9 KNI 900 B 1 HETATM 53 H H101 KNI . . . C 2 4.908 5.44 10.28 1 15 ? H101 KNI 900 B 1 HETATM 54 H H102 KNI . . . C 2 6.065 4.272 10.92 1 15 ? H102 KNI 900 B 1 HETATM 55 H HN2 KNI . . . C 2 4.542 1.915 10.237 1 15 ? HN2 KNI 900 B 1 HETATM 56 H H26 KNI . . . C 2 2.537 2.226 12.444 1 15 ? H26 KNI 900 B 1 HETATM 57 H H121 KNI . . . C 2 2.302 0.156 10.249 1 15 ? H121 KNI 900 B 1 HETATM 58 H H122 KNI . . . C 2 1.512 1.728 10.147 1 15 ? H122 KNI 900 B 1 HETATM 59 H H271 KNI . . . C 2 -0.988 1.969 12.855 1 15 ? H271 KNI 900 B 1 HETATM 60 H H272 KNI . . . C 2 -0.541 2.377 11.191 1 15 ? H272 KNI 900 B 1 HETATM 61 H H273 KNI . . . C 2 0.538 2.811 12.523 1 15 ? H273 KNI 900 B 1 HETATM 62 H HN3 KNI . . . C 2 4.476 1.951 13.75 1 15 ? HN3 KNI 900 B 1 HETATM 63 H H15 KNI . . . C 2 3.62 -0.263 15.574 1 15 ? H15 KNI 900 B 1 HETATM 64 H H161 KNI . . . C 2 7.437 -0.007 14.91 1 15 ? H161 KNI 900 B 1 HETATM 65 H H162 KNI . . . C 2 6.759 1.59 14.911 1 15 ? H162 KNI 900 B 1 HETATM 66 H H31 KNI . . . C 2 8.887 1.478 9.463 1 15 ? H31 KNI 900 B 1 HETATM 67 H H14 KNI . . . C 2 5.427 -0.878 13.76 1 15 ? H14 KNI 900 B 1 HETATM 68 H HO2 KNI . . . C 2 5.877 0.783 16.664 1 15 ? HO2 KNI 900 B 1 HETATM 69 H H29 KNI . . . C 2 6.993 3 12.984 1 15 ? H29 KNI 900 B 1 HETATM 70 H H33 KNI . . . C 2 7.884 -1.138 12.675 1 15 ? H33 KNI 900 B 1 HETATM 71 H H30 KNI . . . C 2 7.975 3.365 10.758 1 15 ? H30 KNI 900 B 1 HETATM 72 H H32 KNI . . . C 2 8.849 -0.762 10.435 1 15 ? H32 KNI 900 B 1 HETATM 73 H H201 KNI . . . C 2 2.687 -2.203 15.712 1 15 ? H201 KNI 900 B 1 HETATM 74 H H202 KNI . . . C 2 3.705 -2.186 14.257 1 15 ? H202 KNI 900 B 1 HETATM 75 H H18 KNI . . . C 2 5.597 -3.754 17.573 1 15 ? H18 KNI 900 B 1 HETATM 76 H H191 KNI . . . C 2 3.861 -5.207 17.164 1 15 ? H191 KNI 900 B 1 HETATM 77 H H192 KNI . . . C 2 4.934 -5.915 15.968 1 15 ? H192 KNI 900 B 1 HETATM 78 H HN5 KNI . . . C 2 7.441 -4.932 17.32 1 15 ? HN5 KNI 900 B 1 HETATM 79 H H231 KNI . . . C 2 10.609 -3.299 15.265 1 15 ? H231 KNI 900 B 1 HETATM 80 H H232 KNI . . . C 2 9.47 -2.559 16.382 1 15 ? H232 KNI 900 B 1 HETATM 81 H H233 KNI . . . C 2 9.037 -2.794 14.699 1 15 ? H233 KNI 900 B 1 HETATM 82 H H241 KNI . . . C 2 10.113 -5.614 14.289 1 15 ? H241 KNI 900 B 1 HETATM 83 H H242 KNI . . . C 2 8.454 -5.241 13.864 1 15 ? H242 KNI 900 B 1 HETATM 84 H H243 KNI . . . C 2 8.795 -6.582 14.938 1 15 ? H243 KNI 900 B 1 HETATM 85 H H251 KNI . . . C 2 10.897 -5.385 16.679 1 15 ? H251 KNI 900 B 1 HETATM 86 H H252 KNI . . . C 2 9.487 -6.117 17.421 1 15 ? H252 KNI 900 B 1 HETATM 87 H H253 KNI . . . C 2 9.956 -4.474 17.846 1 15 ? H253 KNI 900 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 87 #