data_1HQ5 # _model_server_result.job_id dkN7aM8VlqlyLbxEKZjMrA _model_server_result.datetime_utc '2025-09-04 22:20:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hq5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":503}' # _entry.id 1HQ5 # _exptl.entry_id 1HQ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1HQ5 _cell.length_a 91.3 _cell.length_b 91.3 _cell.length_c 69.4 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2,3 B,F,G,H,J 2 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 91.3 0 0 5 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 45.65 79.068119 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 101 A HIS 101 1_555 C MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 A OD2 ASP 124 A ASP 124 1_555 C MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc3 A OD1 ASP 124 A ASP 124 1_555 D MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc4 A ND1 HIS 126 A HIS 126 1_555 D MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc5 A OD2 ASP 128 A ASP 128 1_555 C MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc6 A OD2 ASP 232 A ASP 232 1_555 C MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc7 A OD2 ASP 232 A ASP 232 1_555 D MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc8 A OD1 ASP 234 A ASP 234 1_555 D MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc9 A OD2 ASP 234 A ASP 234 1_555 D MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc10 C MN MN . A MN 500 1_555 E O1 S2C . A S2C 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc11 C MN MN . A MN 500 1_555 E O3 S2C . A S2C 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc12 D MN MN . A MN 501 1_555 E O2 S2C . A S2C 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc13 D MN MN . A MN 501 1_555 E O3 S2C . A S2C 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc14 B ND1 HIS 101 B HIS 101 1_555 F MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc15 B OD2 ASP 124 B ASP 124 1_555 F MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc16 B OD1 ASP 124 B ASP 124 1_555 G MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc17 B ND1 HIS 126 B HIS 126 1_555 G MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc18 B OD2 ASP 128 B ASP 128 1_555 F MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc19 B OD2 ASP 232 B ASP 232 1_555 F MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc20 B OD2 ASP 232 B ASP 232 1_555 G MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc21 B OD2 ASP 234 B ASP 234 1_555 G MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc22 B OD1 ASP 234 B ASP 234 1_555 G MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc23 F MN MN . B MN 502 1_555 H O1 S2C . B S2C 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc24 F MN MN . B MN 502 1_555 H O3 S2C . B S2C 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc25 G MN MN . B MN 503 1_555 H O2 S2C . B S2C 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc26 G MN MN . B MN 503 1_555 H O3 S2C . B S2C 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1HQ5 _atom_sites.fract_transf_matrix[1][1] 0.010953 _atom_sites.fract_transf_matrix[1][2] 0.006324 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 500 500 MN MN . D 2 MN A 1 501 501 MN MN . E 3 S2C A 1 551 551 S2C BEC . F 2 MN B 1 502 502 MN MN . G 2 MN B 1 503 503 MN MN . H 3 S2C B 1 552 552 S2C BEC . I 4 HOH A 1 601 601 HOH WAT . I 4 HOH A 2 602 602 HOH WAT . I 4 HOH A 3 605 605 HOH WAT . I 4 HOH A 4 607 607 HOH WAT . I 4 HOH A 5 609 609 HOH WAT . I 4 HOH A 6 611 611 HOH WAT . I 4 HOH A 7 614 614 HOH WAT . I 4 HOH A 8 615 615 HOH WAT . I 4 HOH A 9 616 616 HOH WAT . I 4 HOH A 10 618 618 HOH WAT . I 4 HOH A 11 619 619 HOH WAT . I 4 HOH A 12 621 621 HOH WAT . I 4 HOH A 13 624 624 HOH WAT . I 4 HOH A 14 625 625 HOH WAT . I 4 HOH A 15 626 626 HOH WAT . I 4 HOH A 16 627 627 HOH WAT . I 4 HOH A 17 628 628 HOH WAT . I 4 HOH A 18 630 630 HOH WAT . I 4 HOH A 19 631 631 HOH WAT . I 4 HOH A 20 632 632 HOH WAT . I 4 HOH A 21 633 633 HOH WAT . I 4 HOH A 22 634 634 HOH WAT . I 4 HOH A 23 637 637 HOH WAT . I 4 HOH A 24 639 639 HOH WAT . I 4 HOH A 25 640 640 HOH WAT . I 4 HOH A 26 642 642 HOH WAT . I 4 HOH A 27 649 649 HOH WAT . I 4 HOH A 28 650 650 HOH WAT . I 4 HOH A 29 651 651 HOH WAT . I 4 HOH A 30 652 652 HOH WAT . J 4 HOH B 1 603 603 HOH WAT . J 4 HOH B 2 604 604 HOH WAT . J 4 HOH B 3 606 606 HOH WAT . J 4 HOH B 4 608 608 HOH WAT . J 4 HOH B 5 610 610 HOH WAT . J 4 HOH B 6 612 612 HOH WAT . J 4 HOH B 7 613 613 HOH WAT . J 4 HOH B 8 617 617 HOH WAT . J 4 HOH B 9 620 620 HOH WAT . J 4 HOH B 10 622 622 HOH WAT . J 4 HOH B 11 623 623 HOH WAT . J 4 HOH B 12 629 629 HOH WAT . J 4 HOH B 13 635 635 HOH WAT . J 4 HOH B 14 636 636 HOH WAT . J 4 HOH B 15 638 638 HOH WAT . J 4 HOH B 16 641 641 HOH WAT . J 4 HOH B 17 643 643 HOH WAT . J 4 HOH B 18 644 644 HOH WAT . J 4 HOH B 19 645 645 HOH WAT . J 4 HOH B 20 646 646 HOH WAT . J 4 HOH B 21 647 647 HOH WAT . J 4 HOH B 22 648 648 HOH WAT . J 4 HOH B 23 653 653 HOH WAT . J 4 HOH B 24 654 654 HOH WAT . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 63.792 _atom_site.Cartn_y 17.999 _atom_site.Cartn_z 30.753 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 503 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #