data_1HQL # _model_server_result.job_id fqPLidftn-6x6y4VCiRLlw _model_server_result.datetime_utc '2024-11-02 19:29:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hql # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 1HQL # _exptl.entry_id 1HQL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HQL _cell.length_a 111.21 _cell.length_b 51.28 _cell.length_c 77.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HQL _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 111.21 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLA MBG C1 O1 . O3 HO3 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C MBG 1 C 1 MBG C 402 MBG 2 n C GLA 2 C 2 GLA C 401 GAL 3 n D NAG 1 D 1 NAG E 502 NAG 3 n D NAG 2 D 2 NAG E 501 NAG 2 n E MBG 1 E 1 MBG D 402 MBG 2 n E GLA 2 E 2 GLA D 401 GAL 3 n F NAG 1 F 1 NAG F 502 NAG 3 n F NAG 2 F 2 NAG F 501 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 27 A ASN 27 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale2 B ND2 ASN 27 B ASN 27 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale3 C O3 MBG . C MBG 1 1_555 C C1 GLA . C GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale4 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale5 E O3 MBG . E MBG 1 1_555 E C1 GLA . E GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale6 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? metalc ? metalc1 A OE2 GLU 128 A GLU 128 1_555 G MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc2 A OD2 ASP 130 A ASP 130 1_555 G MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc3 A OD2 ASP 130 A ASP 130 1_555 H CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc4 A OD1 ASP 130 A ASP 130 1_555 H CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc5 A O TRP 132 A TRP 132 1_555 H CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc6 A OD1 ASN 134 A ASN 134 1_555 H CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc7 A OE1 GLU 139 A GLU 139 1_555 G MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc8 A OE2 GLU 139 A GLU 139 1_555 H CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc9 A NE2 HIS 144 A HIS 144 1_555 G MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc10 G MN MN . A MN 301 1_555 K O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc11 G MN MN . A MN 301 1_555 K O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc12 H CA CA . A CA 302 1_555 K O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc13 H CA CA . A CA 302 1_555 K O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc14 B OE2 GLU 128 B GLU 128 1_555 I MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc15 B OD2 ASP 130 B ASP 130 1_555 I MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc16 B OD1 ASP 130 B ASP 130 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc17 B OD2 ASP 130 B ASP 130 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc18 B O TRP 132 B TRP 132 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc19 B OD1 ASN 134 B ASN 134 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc20 B OE1 GLU 139 B GLU 139 1_555 I MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc21 B OE2 GLU 139 B GLU 139 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc22 B NE2 HIS 144 B HIS 144 1_555 I MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc23 I MN MN . B MN 301 1_555 L O HOH . B HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc24 I MN MN . B MN 301 1_555 L O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc25 J CA CA . B CA 302 1_555 L O HOH . B HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc26 J CA CA . B CA 302 1_555 L O HOH . B HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1HQL _atom_sites.fract_transf_matrix[1][1] 0.008992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012968 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 MN A 1 301 301 MN MN . H 5 CA A 1 302 302 CA CA . I 4 MN B 1 301 301 MN MN . J 5 CA B 1 302 302 CA CA . K 6 HOH A 1 503 1 HOH HOH . K 6 HOH A 2 504 2 HOH HOH . K 6 HOH A 3 505 3 HOH HOH . K 6 HOH A 4 506 4 HOH HOH . K 6 HOH A 5 507 5 HOH HOH . K 6 HOH A 6 508 6 HOH HOH . K 6 HOH A 7 509 7 HOH HOH . K 6 HOH A 8 510 8 HOH HOH . K 6 HOH A 9 511 9 HOH HOH . K 6 HOH A 10 512 10 HOH HOH . K 6 HOH A 11 513 11 HOH HOH . K 6 HOH A 12 514 12 HOH HOH . K 6 HOH A 13 515 13 HOH HOH . K 6 HOH A 14 516 14 HOH HOH . K 6 HOH A 15 517 15 HOH HOH . K 6 HOH A 16 518 16 HOH HOH . K 6 HOH A 17 519 35 HOH HOH . K 6 HOH A 18 520 40 HOH HOH . K 6 HOH A 19 521 43 HOH HOH . K 6 HOH A 20 522 44 HOH HOH . K 6 HOH A 21 523 46 HOH HOH . K 6 HOH A 22 524 52 HOH HOH . K 6 HOH A 23 525 53 HOH HOH . K 6 HOH A 24 526 54 HOH HOH . K 6 HOH A 25 527 57 HOH HOH . K 6 HOH A 26 528 62 HOH HOH . K 6 HOH A 27 529 64 HOH HOH . K 6 HOH A 28 530 69 HOH HOH . K 6 HOH A 29 531 70 HOH HOH . K 6 HOH A 30 532 73 HOH HOH . K 6 HOH A 31 533 81 HOH HOH . K 6 HOH A 32 534 84 HOH HOH . K 6 HOH A 33 535 85 HOH HOH . K 6 HOH A 34 536 88 HOH HOH . K 6 HOH A 35 537 93 HOH HOH . K 6 HOH A 36 538 94 HOH HOH . K 6 HOH A 37 539 95 HOH HOH . K 6 HOH A 38 540 99 HOH HOH . K 6 HOH A 39 541 100 HOH HOH . K 6 HOH A 40 542 103 HOH HOH . K 6 HOH A 41 543 105 HOH HOH . K 6 HOH A 42 544 106 HOH HOH . K 6 HOH A 43 545 107 HOH HOH . K 6 HOH A 44 546 108 HOH HOH . K 6 HOH A 45 547 109 HOH HOH . K 6 HOH A 46 548 111 HOH HOH . L 6 HOH B 1 503 17 HOH HOH . L 6 HOH B 2 504 18 HOH HOH . L 6 HOH B 3 505 19 HOH HOH . L 6 HOH B 4 506 20 HOH HOH . L 6 HOH B 5 507 21 HOH HOH . L 6 HOH B 6 508 22 HOH HOH . L 6 HOH B 7 509 23 HOH HOH . L 6 HOH B 8 510 24 HOH HOH . L 6 HOH B 9 511 25 HOH HOH . L 6 HOH B 10 512 26 HOH HOH . L 6 HOH B 11 513 27 HOH HOH . L 6 HOH B 12 514 28 HOH HOH . L 6 HOH B 13 515 29 HOH HOH . L 6 HOH B 14 516 30 HOH HOH . L 6 HOH B 15 517 31 HOH HOH . L 6 HOH B 16 518 32 HOH HOH . L 6 HOH B 17 519 33 HOH HOH . L 6 HOH B 18 520 34 HOH HOH . L 6 HOH B 19 521 36 HOH HOH . L 6 HOH B 20 522 37 HOH HOH . L 6 HOH B 21 523 38 HOH HOH . L 6 HOH B 22 524 39 HOH HOH . L 6 HOH B 23 525 41 HOH HOH . L 6 HOH B 24 526 42 HOH HOH . L 6 HOH B 25 527 45 HOH HOH . L 6 HOH B 26 528 47 HOH HOH . L 6 HOH B 27 529 48 HOH HOH . L 6 HOH B 28 530 49 HOH HOH . L 6 HOH B 29 531 50 HOH HOH . L 6 HOH B 30 532 51 HOH HOH . L 6 HOH B 31 533 55 HOH HOH . L 6 HOH B 32 534 56 HOH HOH . L 6 HOH B 33 535 58 HOH HOH . L 6 HOH B 34 536 59 HOH HOH . L 6 HOH B 35 537 60 HOH HOH . L 6 HOH B 36 538 61 HOH HOH . L 6 HOH B 37 539 63 HOH HOH . L 6 HOH B 38 540 65 HOH HOH . L 6 HOH B 39 541 66 HOH HOH . L 6 HOH B 40 542 67 HOH HOH . L 6 HOH B 41 543 68 HOH HOH . L 6 HOH B 42 544 71 HOH HOH . L 6 HOH B 43 545 72 HOH HOH . L 6 HOH B 44 546 74 HOH HOH . L 6 HOH B 45 547 75 HOH HOH . L 6 HOH B 46 548 76 HOH HOH . L 6 HOH B 47 549 77 HOH HOH . L 6 HOH B 48 550 78 HOH HOH . L 6 HOH B 49 551 79 HOH HOH . L 6 HOH B 50 552 80 HOH HOH . L 6 HOH B 51 553 82 HOH HOH . L 6 HOH B 52 554 83 HOH HOH . L 6 HOH B 53 555 86 HOH HOH . L 6 HOH B 54 556 87 HOH HOH . L 6 HOH B 55 557 89 HOH HOH . L 6 HOH B 56 558 90 HOH HOH . L 6 HOH B 57 559 91 HOH HOH . L 6 HOH B 58 560 92 HOH HOH . L 6 HOH B 59 561 96 HOH HOH . L 6 HOH B 60 562 97 HOH HOH . L 6 HOH B 61 563 98 HOH HOH . L 6 HOH B 62 564 101 HOH HOH . L 6 HOH B 63 565 102 HOH HOH . L 6 HOH B 64 566 104 HOH HOH . L 6 HOH B 65 567 110 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x 45.359 _atom_site.Cartn_y 17.335 _atom_site.Cartn_z 59.385 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #