data_1HQY # _model_server_result.job_id AjZrrQTZz_48IOPX_ruT8g _model_server_result.datetime_utc '2024-12-30 16:27:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hqy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1450}' # _entry.id 1HQY # _exptl.entry_id 1HQY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1HQY _cell.length_a 172.022 _cell.length_b 172.022 _cell.length_c 276.569 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HQY _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dodecameric 12 author_defined_assembly 1 ? hexameric 6 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1,2,4 C,D 2 1,3,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 86.011 148.975422 0 3 'crystal symmetry operation' 2_675 -y+1,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 297.950844 0 4 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -86.011 148.975422 0 5 'crystal symmetry operation' 3_465 -x+y-1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -258.033 148.975422 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1HQY _atom_sites.fract_transf_matrix[1][1] 0.005813 _atom_sites.fract_transf_matrix[1][2] 0.003356 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006713 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 ADP E 1 450 450 ADP ADP . H 3 ADP F 1 1450 1450 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . H 3 17.764 127.315 -37.398 1 64.99 ? PB ADP 1450 F 1 HETATM 2 O O1B ADP . . . H 3 18.43 126.059 -37.83 1 62.68 ? O1B ADP 1450 F 1 HETATM 3 O O2B ADP . . . H 3 16.61 127.003 -36.424 1 62.94 ? O2B ADP 1450 F 1 HETATM 4 O O3B ADP . . . H 3 17.282 128.094 -38.549 1 65.97 ? O3B ADP 1450 F 1 HETATM 5 P PA ADP . . . H 3 19.597 127.942 -35.168 1 59.95 ? PA ADP 1450 F 1 HETATM 6 O O1A ADP . . . H 3 20.316 129.129 -34.808 1 63.53 ? O1A ADP 1450 F 1 HETATM 7 O O2A ADP . . . H 3 18.627 127.327 -34.273 1 64.12 ? O2A ADP 1450 F 1 HETATM 8 O O3A ADP . . . H 3 18.754 128.177 -36.542 1 63.43 ? O3A ADP 1450 F 1 HETATM 9 O O5' ADP . . . H 3 20.661 126.81 -35.383 1 59.34 ? O5' ADP 1450 F 1 HETATM 10 C C5' ADP . . . H 3 21.838 127.035 -36.16 1 57.25 ? C5' ADP 1450 F 1 HETATM 11 C C4' ADP . . . H 3 23.113 127.201 -35.295 1 54.03 ? C4' ADP 1450 F 1 HETATM 12 O O4' ADP . . . H 3 23.845 128.304 -35.918 1 54.53 ? O4' ADP 1450 F 1 HETATM 13 C C3' ADP . . . H 3 22.964 127.659 -33.829 1 53.78 ? C3' ADP 1450 F 1 HETATM 14 O O3' ADP . . . H 3 23.655 126.757 -32.969 1 53.46 ? O3' ADP 1450 F 1 HETATM 15 C C2' ADP . . . H 3 23.622 129.059 -33.676 1 53.62 ? C2' ADP 1450 F 1 HETATM 16 O O2' ADP . . . H 3 24.663 129.088 -32.673 1 55.47 ? O2' ADP 1450 F 1 HETATM 17 C C1' ADP . . . H 3 24.185 129.409 -35.073 1 53.17 ? C1' ADP 1450 F 1 HETATM 18 N N9 ADP . . . H 3 23.48 130.693 -35.611 1 52.83 ? N9 ADP 1450 F 1 HETATM 19 C C8 ADP . . . H 3 22.66 130.773 -36.658 1 50.98 ? C8 ADP 1450 F 1 HETATM 20 N N7 ADP . . . H 3 22.231 131.943 -36.878 1 51.66 ? N7 ADP 1450 F 1 HETATM 21 C C5 ADP . . . H 3 22.802 132.736 -35.912 1 51.09 ? C5 ADP 1450 F 1 HETATM 22 C C6 ADP . . . H 3 22.741 134.144 -35.602 1 51.16 ? C6 ADP 1450 F 1 HETATM 23 N N6 ADP . . . H 3 21.987 134.997 -36.347 1 53.95 ? N6 ADP 1450 F 1 HETATM 24 N N1 ADP . . . H 3 23.468 134.626 -34.521 1 51.47 ? N1 ADP 1450 F 1 HETATM 25 C C2 ADP . . . H 3 24.215 133.782 -33.785 1 51.1 ? C2 ADP 1450 F 1 HETATM 26 N N3 ADP . . . H 3 24.328 132.447 -34.009 1 51.89 ? N3 ADP 1450 F 1 HETATM 27 C C4 ADP . . . H 3 23.596 131.98 -35.095 1 52.34 ? C4 ADP 1450 F 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #