data_1HQY # _model_server_result.job_id oBYvxWbzLlgHJGjzTJEMUA _model_server_result.datetime_utc '2024-12-21 15:05:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hqy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":450}' # _entry.id 1HQY # _exptl.entry_id 1HQY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1HQY _cell.length_a 172.022 _cell.length_b 172.022 _cell.length_c 276.569 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HQY _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dodecameric 12 author_defined_assembly 1 ? hexameric 6 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1,2,4 C,D 2 1,3,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 86.011 148.975422 0 3 'crystal symmetry operation' 2_675 -y+1,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 297.950844 0 4 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -86.011 148.975422 0 5 'crystal symmetry operation' 3_465 -x+y-1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -258.033 148.975422 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1HQY _atom_sites.fract_transf_matrix[1][1] 0.005813 _atom_sites.fract_transf_matrix[1][2] 0.003356 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006713 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 ADP E 1 450 450 ADP ADP . H 3 ADP F 1 1450 1450 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . G 3 -15.25 128.76 -37.45 1 66.72 ? PB ADP 450 E 1 HETATM 2 O O1B ADP . . . G 3 -13.781 128.654 -37.693 1 66.78 ? O1B ADP 450 E 1 HETATM 3 O O2B ADP . . . G 3 -15.741 127.593 -36.568 1 64.61 ? O2B ADP 450 E 1 HETATM 4 O O3B ADP . . . G 3 -16.009 128.815 -38.705 1 68.42 ? O3B ADP 450 E 1 HETATM 5 P PA ADP . . . G 3 -14.865 130.604 -35.235 1 58.44 ? PA ADP 450 E 1 HETATM 6 O O1A ADP . . . G 3 -15.554 131.782 -34.823 1 60.93 ? O1A ADP 450 E 1 HETATM 7 O O2A ADP . . . G 3 -14.734 129.436 -34.38 1 61.4 ? O2A ADP 450 E 1 HETATM 8 O O3A ADP . . . G 3 -15.529 130.015 -36.582 1 62.69 ? O3A ADP 450 E 1 HETATM 9 O O5' ADP . . . G 3 -13.376 130.999 -35.482 1 56.75 ? O5' ADP 450 E 1 HETATM 10 C C5' ADP . . . G 3 -13.018 132.166 -36.214 1 53.92 ? C5' ADP 450 E 1 HETATM 11 C C4' ADP . . . G 3 -12.531 133.315 -35.283 1 51.73 ? C4' ADP 450 E 1 HETATM 12 O O4' ADP . . . G 3 -13.075 134.534 -35.886 1 50.82 ? O4' ADP 450 E 1 HETATM 13 C C3' ADP . . . G 3 -13.066 133.369 -33.83 1 51.8 ? C3' ADP 450 E 1 HETATM 14 O O3' ADP . . . G 3 -11.994 133.464 -32.897 1 52.57 ? O3' ADP 450 E 1 HETATM 15 C C2' ADP . . . G 3 -13.925 134.644 -33.662 1 52.24 ? C2' ADP 450 E 1 HETATM 16 O O2' ADP . . . G 3 -13.433 135.496 -32.592 1 54.78 ? O2' ADP 450 E 1 HETATM 17 C C1' ADP . . . G 3 -13.885 135.365 -35.048 1 50.3 ? C1' ADP 450 E 1 HETATM 18 N N9 ADP . . . G 3 -15.329 135.386 -35.613 1 49.26 ? N9 ADP 450 E 1 HETATM 19 C C8 ADP . . . G 3 -15.79 134.712 -36.669 1 48.4 ? C8 ADP 450 E 1 HETATM 20 N N7 ADP . . . G 3 -17.016 134.914 -36.909 1 49.16 ? N7 ADP 450 E 1 HETATM 21 C C5 ADP . . . G 3 -17.435 135.798 -35.948 1 48.1 ? C5 ADP 450 E 1 HETATM 22 C C6 ADP . . . G 3 -18.695 136.44 -35.646 1 47.86 ? C6 ADP 450 E 1 HETATM 23 N N6 ADP . . . G 3 -19.805 136.213 -36.396 1 49.55 ? N6 ADP 450 E 1 HETATM 24 N N1 ADP . . . G 3 -18.759 137.307 -34.563 1 47.42 ? N1 ADP 450 E 1 HETATM 25 C C2 ADP . . . G 3 -17.657 137.533 -33.816 1 46.08 ? C2 ADP 450 E 1 HETATM 26 N N3 ADP . . . G 3 -16.44 136.974 -34.029 1 47.19 ? N3 ADP 450 E 1 HETATM 27 C C4 ADP . . . G 3 -16.391 136.112 -35.112 1 48.65 ? C4 ADP 450 E 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #