data_1HT1 # _model_server_result.job_id Ymht5G8ZhuNRj3YZaqcRAg _model_server_result.datetime_utc '2025-04-21 13:21:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ht1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":450}' # _entry.id 1HT1 # _exptl.entry_id 1HT1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1HT1 _cell.length_a 172.022 _cell.length_b 172.022 _cell.length_c 276.569 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HT1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 24-meric 24 author_defined_assembly 1 ? dodecameric 12 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression E,F,G,H,I,J,K,L,M,N,O,P 1 1,2,3 A,B,C,D 2 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 86.011 148.975422 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -86.011 148.975422 0 4 'crystal symmetry operation' 2_675 -y+1,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 297.950844 0 5 'crystal symmetry operation' 3_465 -x+y-1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -258.033 148.975422 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1HT1 _atom_sites.fract_transf_matrix[1][1] 0.005813 _atom_sites.fract_transf_matrix[1][2] 0.003356 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 ADP E 1 450 450 ADP ADP . N 3 ADP F 1 1450 450 ADP ADP . O 3 ADP G 1 2450 450 ADP ADP . P 3 ADP I 1 3450 450 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . M 3 -15.365 128.631 100.776 1 57.5 ? PB ADP 450 E 1 HETATM 2 O O1B ADP . . . M 3 -13.914 128.58 100.425 1 56.8 ? O1B ADP 450 E 1 HETATM 3 O O2B ADP . . . M 3 -15.758 127.451 101.697 1 55.02 ? O2B ADP 450 E 1 HETATM 4 O O3B ADP . . . M 3 -16.221 128.65 99.582 1 58.99 ? O3B ADP 450 E 1 HETATM 5 P PA ADP . . . M 3 -14.922 130.46 102.989 1 52.65 ? PA ADP 450 E 1 HETATM 6 O O1A ADP . . . M 3 -15.589 131.641 103.429 1 58.41 ? O1A ADP 450 E 1 HETATM 7 O O2A ADP . . . M 3 -14.786 129.284 103.832 1 58.13 ? O2A ADP 450 E 1 HETATM 8 O O3A ADP . . . M 3 -15.622 129.885 101.654 1 54.76 ? O3A ADP 450 E 1 HETATM 9 O O5' ADP . . . M 3 -13.442 130.838 102.715 1 51.36 ? O5' ADP 450 E 1 HETATM 10 C C5' ADP . . . M 3 -13.097 132.005 101.994 1 48.07 ? C5' ADP 450 E 1 HETATM 11 C C4' ADP . . . M 3 -12.593 133.128 102.936 1 46.91 ? C4' ADP 450 E 1 HETATM 12 O O4' ADP . . . M 3 -13.128 134.358 102.353 1 45.29 ? O4' ADP 450 E 1 HETATM 13 C C3' ADP . . . M 3 -13.12 133.16 104.397 1 47.52 ? C3' ADP 450 E 1 HETATM 14 O O3' ADP . . . M 3 -12.045 133.204 105.33 1 49.97 ? O3' ADP 450 E 1 HETATM 15 C C2' ADP . . . M 3 -13.953 134.449 104.595 1 47.94 ? C2' ADP 450 E 1 HETATM 16 O O2' ADP . . . M 3 -13.413 135.28 105.666 1 50.52 ? O2' ADP 450 E 1 HETATM 17 C C1' ADP . . . M 3 -13.917 135.184 103.214 1 46.25 ? C1' ADP 450 E 1 HETATM 18 N N9 ADP . . . M 3 -15.363 135.23 102.643 1 44.93 ? N9 ADP 450 E 1 HETATM 19 C C8 ADP . . . M 3 -15.825 134.582 101.567 1 43.93 ? C8 ADP 450 E 1 HETATM 20 N N7 ADP . . . M 3 -17.05 134.804 101.323 1 44.17 ? N7 ADP 450 E 1 HETATM 21 C C5 ADP . . . M 3 -17.468 135.672 102.302 1 42.84 ? C5 ADP 450 E 1 HETATM 22 C C6 ADP . . . M 3 -18.722 136.326 102.611 1 41.75 ? C6 ADP 450 E 1 HETATM 23 N N6 ADP . . . M 3 -19.836 136.135 101.856 1 41.8 ? N6 ADP 450 E 1 HETATM 24 N N1 ADP . . . M 3 -18.778 137.167 103.716 1 41.41 ? N1 ADP 450 E 1 HETATM 25 C C2 ADP . . . M 3 -17.679 137.364 104.472 1 40.58 ? C2 ADP 450 E 1 HETATM 26 N N3 ADP . . . M 3 -16.468 136.795 104.254 1 41.25 ? N3 ADP 450 E 1 HETATM 27 C C4 ADP . . . M 3 -16.421 135.958 103.152 1 43.86 ? C4 ADP 450 E 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #