data_1HT5 # _model_server_result.job_id kL1IIZCT47zrcG64YlkGnw _model_server_result.datetime_utc '2024-11-13 13:58:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ht5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":2681}' # _entry.id 1HT5 # _exptl.entry_id 1HT5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HT5 _cell.length_a 98.888 _cell.length_b 209.45 _cell.length_c 223.013 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HT5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 K N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 36 1_555 A SG CYS 15 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 5 A CYS 37 1_555 A SG CYS 127 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 9 A CYS 41 1_555 A SG CYS 25 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 27 A CYS 59 1_555 A SG CYS 37 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 537 A CYS 569 1_555 A SG CYS 543 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 4 B CYS 36 1_555 B SG CYS 15 B CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 B SG CYS 5 B CYS 37 1_555 B SG CYS 127 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 9 B CYS 41 1_555 B SG CYS 25 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 B SG CYS 27 B CYS 59 1_555 B SG CYS 37 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 B SG CYS 537 B CYS 569 1_555 B SG CYS 543 B CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A NE2 HIS 356 A HIS 388 1_555 I FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc2 B NE2 HIS 356 B HIS 388 1_555 R FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 402 n n C1 O1 NAG sing 403 n n C1 O5 NAG sing 404 n n C1 H1 NAG sing 405 n n C2 C3 NAG sing 406 n n C2 N2 NAG sing 407 n n C2 H2 NAG sing 408 n n C3 C4 NAG sing 409 n n C3 O3 NAG sing 410 n n C3 H3 NAG sing 411 n n C4 C5 NAG sing 412 n n C4 O4 NAG sing 413 n n C4 H4 NAG sing 414 n n C5 C6 NAG sing 415 n n C5 O5 NAG sing 416 n n C5 H5 NAG sing 417 n n C6 O6 NAG sing 418 n n C6 H61 NAG sing 419 n n C6 H62 NAG sing 420 n n C7 C8 NAG sing 421 n n C7 N2 NAG sing 422 n n C7 O7 NAG doub 423 n n C8 H81 NAG sing 424 n n C8 H82 NAG sing 425 n n C8 H83 NAG sing 426 n n N2 HN2 NAG sing 427 n n O1 HO1 NAG sing 428 n n O3 HO3 NAG sing 429 n n O4 HO4 NAG sing 430 n n O6 HO6 NAG sing 431 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1HT5 _atom_sites.fract_transf_matrix[1][1] 0.010112 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BOG A 1 1802 802 BOG BOG . D 3 NAG A 1 1661 661 NAG NAG . E 3 NAG A 1 1662 662 NAG NAG . F 3 NAG A 1 1671 671 NAG NAG . G 3 NAG A 1 1681 681 NAG NAG . H 3 NAG A 1 2672 672 NAG NAG . I 4 HEM A 1 601 601 HEM HEM . J 5 FL2 A 1 1701 701 FL2 FL2 . K 3 NAG B 1 1672 672 NAG NAG . L 2 BOG B 1 2802 802 BOG BOG . M 2 BOG B 1 2801 801 BOG BOG . N 3 NAG B 1 2661 661 NAG NAG . O 3 NAG B 1 2662 662 NAG NAG . P 3 NAG B 1 2671 671 NAG NAG . Q 3 NAG B 1 2681 681 NAG NAG . R 4 HEM B 1 601 601 HEM HEM . S 5 FL2 B 1 2701 701 FL2 FL2 . T 6 HOH A 1 2673 2 HOH WAT . T 6 HOH A 2 2674 5 HOH WAT . T 6 HOH A 3 2675 9 HOH WAT . T 6 HOH A 4 2676 11 HOH WAT . T 6 HOH A 5 2677 12 HOH WAT . T 6 HOH A 6 2678 14 HOH WAT . T 6 HOH A 7 2679 16 HOH WAT . T 6 HOH A 8 2680 18 HOH WAT . T 6 HOH A 9 2681 19 HOH WAT . T 6 HOH A 10 2682 21 HOH WAT . T 6 HOH A 11 2683 23 HOH WAT . T 6 HOH A 12 2684 25 HOH WAT . T 6 HOH A 13 2685 26 HOH WAT . T 6 HOH A 14 2686 28 HOH WAT . T 6 HOH A 15 2687 31 HOH WAT . T 6 HOH A 16 2688 32 HOH WAT . T 6 HOH A 17 2689 33 HOH WAT . T 6 HOH A 18 2690 37 HOH WAT . T 6 HOH A 19 2691 46 HOH WAT . T 6 HOH A 20 2692 47 HOH WAT . T 6 HOH A 21 2693 49 HOH WAT . T 6 HOH A 22 2694 53 HOH WAT . T 6 HOH A 23 2695 54 HOH WAT . T 6 HOH A 24 2696 55 HOH WAT . T 6 HOH A 25 2697 56 HOH WAT . T 6 HOH A 26 2698 57 HOH WAT . T 6 HOH A 27 2699 61 HOH WAT . T 6 HOH A 28 2700 62 HOH WAT . T 6 HOH A 29 2701 63 HOH WAT . T 6 HOH A 30 2702 67 HOH WAT . T 6 HOH A 31 2703 68 HOH WAT . T 6 HOH A 32 2704 70 HOH WAT . T 6 HOH A 33 2705 73 HOH WAT . T 6 HOH A 34 2706 75 HOH WAT . T 6 HOH A 35 2707 76 HOH WAT . T 6 HOH A 36 2708 77 HOH WAT . T 6 HOH A 37 2709 78 HOH WAT . T 6 HOH A 38 2710 80 HOH WAT . T 6 HOH A 39 2711 82 HOH WAT . T 6 HOH A 40 2712 83 HOH WAT . T 6 HOH A 41 2713 84 HOH WAT . T 6 HOH A 42 2714 85 HOH WAT . T 6 HOH A 43 2715 87 HOH WAT . T 6 HOH A 44 2716 88 HOH WAT . T 6 HOH A 45 2717 89 HOH WAT . T 6 HOH A 46 2718 90 HOH WAT . T 6 HOH A 47 2719 91 HOH WAT . T 6 HOH A 48 2720 92 HOH WAT . T 6 HOH A 49 2721 95 HOH WAT . T 6 HOH A 50 2722 96 HOH WAT . T 6 HOH A 51 2723 97 HOH WAT . T 6 HOH A 52 2724 100 HOH WAT . T 6 HOH A 53 2725 101 HOH WAT . T 6 HOH A 54 2726 102 HOH WAT . T 6 HOH A 55 2727 104 HOH WAT . T 6 HOH A 56 2728 105 HOH WAT . T 6 HOH A 57 2729 108 HOH WAT . T 6 HOH A 58 2730 109 HOH WAT . T 6 HOH A 59 2731 110 HOH WAT . T 6 HOH A 60 2732 111 HOH WAT . T 6 HOH A 61 2733 113 HOH WAT . T 6 HOH A 62 2734 114 HOH WAT . T 6 HOH A 63 2735 115 HOH WAT . T 6 HOH A 64 2736 118 HOH WAT . T 6 HOH A 65 2737 119 HOH WAT . T 6 HOH A 66 2738 123 HOH WAT . T 6 HOH A 67 2739 124 HOH WAT . T 6 HOH A 68 2740 129 HOH WAT . T 6 HOH A 69 2741 130 HOH WAT . T 6 HOH A 70 2742 132 HOH WAT . T 6 HOH A 71 2743 134 HOH WAT . T 6 HOH A 72 2744 136 HOH WAT . T 6 HOH A 73 2745 137 HOH WAT . T 6 HOH A 74 2746 139 HOH WAT . T 6 HOH A 75 2747 143 HOH WAT . T 6 HOH A 76 2748 144 HOH WAT . T 6 HOH A 77 2749 145 HOH WAT . T 6 HOH A 78 2750 148 HOH WAT . T 6 HOH A 79 2751 150 HOH WAT . U 6 HOH B 1 2803 1 HOH WAT . U 6 HOH B 2 2804 3 HOH WAT . U 6 HOH B 3 2805 4 HOH WAT . U 6 HOH B 4 2806 6 HOH WAT . U 6 HOH B 5 2807 7 HOH WAT . U 6 HOH B 6 2808 8 HOH WAT . U 6 HOH B 7 2809 10 HOH WAT . U 6 HOH B 8 2810 13 HOH WAT . U 6 HOH B 9 2811 15 HOH WAT . U 6 HOH B 10 2812 17 HOH WAT . U 6 HOH B 11 2813 20 HOH WAT . U 6 HOH B 12 2814 22 HOH WAT . U 6 HOH B 13 2815 24 HOH WAT . U 6 HOH B 14 2816 27 HOH WAT . U 6 HOH B 15 2817 29 HOH WAT . U 6 HOH B 16 2818 30 HOH WAT . U 6 HOH B 17 2819 34 HOH WAT . U 6 HOH B 18 2820 35 HOH WAT . U 6 HOH B 19 2821 36 HOH WAT . U 6 HOH B 20 2822 38 HOH WAT . U 6 HOH B 21 2823 39 HOH WAT . U 6 HOH B 22 2824 40 HOH WAT . U 6 HOH B 23 2825 41 HOH WAT . U 6 HOH B 24 2826 42 HOH WAT . U 6 HOH B 25 2827 43 HOH WAT . U 6 HOH B 26 2828 44 HOH WAT . U 6 HOH B 27 2829 45 HOH WAT . U 6 HOH B 28 2830 48 HOH WAT . U 6 HOH B 29 2831 50 HOH WAT . U 6 HOH B 30 2832 51 HOH WAT . U 6 HOH B 31 2833 52 HOH WAT . U 6 HOH B 32 2834 58 HOH WAT . U 6 HOH B 33 2835 59 HOH WAT . U 6 HOH B 34 2836 60 HOH WAT . U 6 HOH B 35 2837 64 HOH WAT . U 6 HOH B 36 2838 65 HOH WAT . U 6 HOH B 37 2839 66 HOH WAT . U 6 HOH B 38 2840 69 HOH WAT . U 6 HOH B 39 2841 71 HOH WAT . U 6 HOH B 40 2842 72 HOH WAT . U 6 HOH B 41 2843 74 HOH WAT . U 6 HOH B 42 2844 79 HOH WAT . U 6 HOH B 43 2845 81 HOH WAT . U 6 HOH B 44 2846 86 HOH WAT . U 6 HOH B 45 2847 93 HOH WAT . U 6 HOH B 46 2848 94 HOH WAT . U 6 HOH B 47 2849 98 HOH WAT . U 6 HOH B 48 2850 99 HOH WAT . U 6 HOH B 49 2851 103 HOH WAT . U 6 HOH B 50 2852 106 HOH WAT . U 6 HOH B 51 2853 107 HOH WAT . U 6 HOH B 52 2854 112 HOH WAT . U 6 HOH B 53 2855 116 HOH WAT . U 6 HOH B 54 2856 117 HOH WAT . U 6 HOH B 55 2857 120 HOH WAT . U 6 HOH B 56 2858 121 HOH WAT . U 6 HOH B 57 2859 122 HOH WAT . U 6 HOH B 58 2860 125 HOH WAT . U 6 HOH B 59 2861 126 HOH WAT . U 6 HOH B 60 2862 127 HOH WAT . U 6 HOH B 61 2863 128 HOH WAT . U 6 HOH B 62 2864 131 HOH WAT . U 6 HOH B 63 2865 133 HOH WAT . U 6 HOH B 64 2866 135 HOH WAT . U 6 HOH B 65 2867 138 HOH WAT . U 6 HOH B 66 2868 140 HOH WAT . U 6 HOH B 67 2869 141 HOH WAT . U 6 HOH B 68 2870 142 HOH WAT . U 6 HOH B 69 2871 146 HOH WAT . U 6 HOH B 70 2872 147 HOH WAT . U 6 HOH B 71 2873 149 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . Q 3 75.563 26.813 154.959 1 31.3 ? C1 NAG 2681 B 1 HETATM 2 C C2 NAG . . . Q 3 77.022 27.305 154.841 1 36.47 ? C2 NAG 2681 B 1 HETATM 3 C C3 NAG . . . Q 3 77.785 26.377 153.825 1 32.56 ? C3 NAG 2681 B 1 HETATM 4 C C4 NAG . . . Q 3 77.738 24.899 154.349 1 36.82 ? C4 NAG 2681 B 1 HETATM 5 C C5 NAG . . . Q 3 76.208 24.497 154.47 1 34.68 ? C5 NAG 2681 B 1 HETATM 6 C C6 NAG . . . Q 3 75.971 23.101 155.024 1 32.27 ? C6 NAG 2681 B 1 HETATM 7 C C7 NAG . . . Q 3 76.693 29.722 155.293 1 38.5 ? C7 NAG 2681 B 1 HETATM 8 C C8 NAG . . . Q 3 77.325 31.077 155.094 1 37.15 ? C8 NAG 2681 B 1 HETATM 9 N N2 NAG . . . Q 3 77.011 28.719 154.436 1 38.52 ? N2 NAG 2681 B 1 HETATM 10 O O3 NAG . . . Q 3 79.135 26.829 153.701 1 42.43 ? O3 NAG 2681 B 1 HETATM 11 O O4 NAG . . . Q 3 78.461 23.983 153.466 1 39.68 ? O4 NAG 2681 B 1 HETATM 12 O O5 NAG . . . Q 3 75.465 25.426 155.36 1 33.15 ? O5 NAG 2681 B 1 HETATM 13 O O6 NAG . . . Q 3 75.685 23.173 156.431 1 39.87 ? O6 NAG 2681 B 1 HETATM 14 O O7 NAG . . . Q 3 75.907 29.577 156.226 1 42.58 ? O7 NAG 2681 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #