data_1HU0 # _model_server_result.job_id I0D3oS3u64ErHvVcgtw8_g _model_server_result.datetime_utc '2024-11-15 10:55:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hu0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":328}' # _entry.id 1HU0 # _exptl.entry_id 1HU0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.11 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-OXOGUANINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1HU0 _cell.length_a 91.988 _cell.length_b 91.988 _cell.length_c 211.615 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HU0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DA 7 E DA 22 1_555 B P PED 8 E PED 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? covale ? covale2 B O3' PED 8 E PED 23 1_555 B P DG 9 E DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale3 B C1' PED 8 E PED 23 1_555 C NZ LYS 246 A LYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? metalc ? metalc1 G O HOH . E HOH 6 1_555 D CA CA . E CA 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? hydrog 'DG-DC PAIR' hydrog1 A N1 DG 1 D DG 1 1_555 B O2 DC 15 E DC 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N1 DG 2 D DG 2 1_555 B N3 DC 14 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N2 DG 2 D DG 2 1_555 B O2 DC 14 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O6 DG 2 D DG 2 1_555 B N4 DC 14 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N3 DT 3 D DT 3 1_555 B N1 DA 13 E DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O4 DT 3 D DT 3 1_555 B N6 DA 13 E DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 4 D DA 4 1_555 B N3 DT 12 E DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 4 D DA 4 1_555 B O4 DT 12 E DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DG 5 D DG 5 1_555 B N3 DC 11 E DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N2 DG 5 D DG 5 1_555 B O2 DC 11 E DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O6 DG 5 D DG 5 1_555 B N4 DC 11 E DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DA 6 D DA 6 1_555 B N3 DT 10 E DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 DA 6 D DA 6 1_555 B O4 DT 10 E DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DC 7 D DC 7 1_555 B N1 DG 9 E DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 DC 7 D DC 7 1_555 B O6 DG 9 E DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 DC 7 D DC 7 1_555 B N2 DG 9 E DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DT 9 D DT 9 1_555 B N1 DA 7 E DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O4 DT 9 D DT 9 1_555 B N6 DA 7 E DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DG 10 D DG 10 1_555 B N3 DC 6 E DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 DG 10 D DG 10 1_555 B O2 DC 6 E DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 DG 10 D DG 10 1_555 B N4 DC 6 E DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DG 11 D DG 11 1_555 B N3 DC 5 E DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 DG 11 D DG 11 1_555 B O2 DC 5 E DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 DG 11 D DG 11 1_555 B N4 DC 5 E DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N1 DA 12 D DA 12 1_555 B N3 DT 4 E DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N6 DA 12 D DA 12 1_555 B O4 DT 4 E DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 DC 13 D DC 13 1_555 B N1 DG 3 E DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 DC 13 D DC 13 1_555 B O6 DG 3 E DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 DC 13 D DC 13 1_555 B N2 DG 3 E DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 14 D DG 14 1_555 B N3 DC 2 E DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 14 D DG 14 1_555 B O2 DC 2 E DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 14 D DG 14 1_555 B N4 DC 2 E DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog33 A O2 DC 15 D DC 15 1_555 B N1 DG 1 E DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C5 H3 N5 O2' _chem_comp.formula_weight 165.11 _chem_comp.id OXG _chem_comp.mon_nstd_flag . _chem_comp.name 8-OXOGUANINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 OXG sing 386 n n N9 C4 OXG doub 387 n n C8 N7 OXG sing 388 n n C8 O8 OXG doub 389 n n N7 C5 OXG doub 390 n n C5 C6 OXG sing 391 n n C5 C4 OXG sing 392 n n C6 O6 OXG doub 393 n n C6 N1 OXG sing 394 n n N1 C2 OXG sing 395 n n N1 H1 OXG sing 396 n n C2 N2 OXG sing 397 n n C2 N3 OXG doub 398 n n N2 H21 OXG sing 399 n n N2 H22 OXG sing 400 n n N3 C4 OXG sing 401 n n # _atom_sites.entry_id 1HU0 _atom_sites.fract_transf_matrix[1][1] 0.010871 _atom_sites.fract_transf_matrix[1][2] 0.006276 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012553 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA E 1 100 100 CA CA . E 5 OXG A 1 328 150 OXG OXG . F 6 HOH D 1 83 83 HOH HOH . F 6 HOH D 2 89 89 HOH HOH . G 6 HOH E 1 6 6 HOH HOH . G 6 HOH E 2 36 36 HOH HOH . G 6 HOH E 3 47 47 HOH HOH . G 6 HOH E 4 60 60 HOH HOH . G 6 HOH E 5 74 74 HOH HOH . H 6 HOH A 1 329 1 HOH HOH . H 6 HOH A 2 330 2 HOH HOH . H 6 HOH A 3 331 3 HOH HOH . H 6 HOH A 4 332 4 HOH HOH . H 6 HOH A 5 333 5 HOH HOH . H 6 HOH A 6 334 7 HOH HOH . H 6 HOH A 7 335 8 HOH HOH . H 6 HOH A 8 336 9 HOH HOH . H 6 HOH A 9 337 10 HOH HOH . H 6 HOH A 10 338 11 HOH HOH . H 6 HOH A 11 339 12 HOH HOH . H 6 HOH A 12 340 13 HOH HOH . H 6 HOH A 13 341 14 HOH HOH . H 6 HOH A 14 342 15 HOH HOH . H 6 HOH A 15 343 16 HOH HOH . H 6 HOH A 16 344 17 HOH HOH . H 6 HOH A 17 345 18 HOH HOH . H 6 HOH A 18 346 19 HOH HOH . H 6 HOH A 19 347 20 HOH HOH . H 6 HOH A 20 348 21 HOH HOH . H 6 HOH A 21 349 22 HOH HOH . H 6 HOH A 22 350 23 HOH HOH . H 6 HOH A 23 351 24 HOH HOH . H 6 HOH A 24 352 25 HOH HOH . H 6 HOH A 25 353 26 HOH HOH . H 6 HOH A 26 354 27 HOH HOH . H 6 HOH A 27 355 28 HOH HOH . H 6 HOH A 28 356 29 HOH HOH . H 6 HOH A 29 357 30 HOH HOH . H 6 HOH A 30 358 31 HOH HOH . H 6 HOH A 31 359 32 HOH HOH . H 6 HOH A 32 360 33 HOH HOH . H 6 HOH A 33 361 34 HOH HOH . H 6 HOH A 34 362 35 HOH HOH . H 6 HOH A 35 363 37 HOH HOH . H 6 HOH A 36 364 38 HOH HOH . H 6 HOH A 37 365 39 HOH HOH . H 6 HOH A 38 366 40 HOH HOH . H 6 HOH A 39 367 41 HOH HOH . H 6 HOH A 40 368 42 HOH HOH . H 6 HOH A 41 369 43 HOH HOH . H 6 HOH A 42 370 44 HOH HOH . H 6 HOH A 43 371 45 HOH HOH . H 6 HOH A 44 372 46 HOH HOH . H 6 HOH A 45 373 48 HOH HOH . H 6 HOH A 46 374 49 HOH HOH . H 6 HOH A 47 375 50 HOH HOH . H 6 HOH A 48 376 51 HOH HOH . H 6 HOH A 49 377 52 HOH HOH . H 6 HOH A 50 378 53 HOH HOH . H 6 HOH A 51 379 54 HOH HOH . H 6 HOH A 52 380 55 HOH HOH . H 6 HOH A 53 381 56 HOH HOH . H 6 HOH A 54 382 57 HOH HOH . H 6 HOH A 55 383 58 HOH HOH . H 6 HOH A 56 384 59 HOH HOH . H 6 HOH A 57 385 61 HOH HOH . H 6 HOH A 58 386 62 HOH HOH . H 6 HOH A 59 387 63 HOH HOH . H 6 HOH A 60 388 64 HOH HOH . H 6 HOH A 61 389 65 HOH HOH . H 6 HOH A 62 390 66 HOH HOH . H 6 HOH A 63 391 67 HOH HOH . H 6 HOH A 64 392 68 HOH HOH . H 6 HOH A 65 393 69 HOH HOH . H 6 HOH A 66 394 70 HOH HOH . H 6 HOH A 67 395 71 HOH HOH . H 6 HOH A 68 396 72 HOH HOH . H 6 HOH A 69 397 73 HOH HOH . H 6 HOH A 70 398 75 HOH HOH . H 6 HOH A 71 399 76 HOH HOH . H 6 HOH A 72 400 77 HOH HOH . H 6 HOH A 73 401 78 HOH HOH . H 6 HOH A 74 402 79 HOH HOH . H 6 HOH A 75 403 80 HOH HOH . H 6 HOH A 76 404 81 HOH HOH . H 6 HOH A 77 405 82 HOH HOH . H 6 HOH A 78 406 84 HOH HOH . H 6 HOH A 79 407 85 HOH HOH . H 6 HOH A 80 408 86 HOH HOH . H 6 HOH A 81 409 87 HOH HOH . H 6 HOH A 82 410 88 HOH HOH . H 6 HOH A 83 411 90 HOH HOH . H 6 HOH A 84 412 91 HOH HOH . H 6 HOH A 85 413 92 HOH HOH . H 6 HOH A 86 414 93 HOH HOH . H 6 HOH A 87 415 94 HOH HOH . H 6 HOH A 88 416 95 HOH HOH . H 6 HOH A 89 417 96 HOH HOH . H 6 HOH A 90 418 97 HOH HOH . H 6 HOH A 91 419 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 OXG . . . E 5 20.23 23.322 34.028 1 66.26 ? N9 OXG 328 A 1 HETATM 2 C C8 OXG . . . E 5 20.346 21.962 34.143 1 66.35 ? C8 OXG 328 A 1 HETATM 3 N N7 OXG . . . E 5 20.42 21.335 33.002 1 66.54 ? N7 OXG 328 A 1 HETATM 4 C C5 OXG . . . E 5 20.348 22.352 32.057 1 65.92 ? C5 OXG 328 A 1 HETATM 5 C C6 OXG . . . E 5 20.382 22.296 30.633 1 64.94 ? C6 OXG 328 A 1 HETATM 6 O O6 OXG . . . E 5 20.487 21.305 29.895 1 62.36 ? O6 OXG 328 A 1 HETATM 7 N N1 OXG . . . E 5 20.286 23.566 30.074 1 66.04 ? N1 OXG 328 A 1 HETATM 8 C C2 OXG . . . E 5 20.177 24.744 30.783 1 66.42 ? C2 OXG 328 A 1 HETATM 9 N N2 OXG . . . E 5 20.115 25.874 30.051 1 65.08 ? N2 OXG 328 A 1 HETATM 10 N N3 OXG . . . E 5 20.14 24.811 32.108 1 65.89 ? N3 OXG 328 A 1 HETATM 11 C C4 OXG . . . E 5 20.231 23.589 32.676 1 66.55 ? C4 OXG 328 A 1 HETATM 12 O O8 OXG . . . E 5 20.378 21.373 35.23 1 67.61 ? O8 OXG 328 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #