data_1HUP # _model_server_result.job_id FccvbQvRAi1gVePrqa7I5A _model_server_result.datetime_utc '2024-11-14 19:27:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 1HUP # _exptl.entry_id 1HUP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1HUP _cell.length_a 76.68 _cell.length_b 76.68 _cell.length_c 58.58 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 38.34 -66.406828 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 76.68 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 135 1_555 A SG CYS 137 A CYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 115 A CYS 202 1_555 A SG CYS 129 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A OD1 ASP 81 A ASP 168 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc2 A OD2 ASP 81 A ASP 168 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc3 A OE1 GLU 85 A GLU 172 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc4 A OE2 GLU 85 A GLU 172 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc5 A OE1 GLU 85 A GLU 172 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc6 A OD1 ASN 102 A ASN 189 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc7 A OD1 ASN 102 A ASN 189 5_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc8 A OE1 GLU 103 A GLU 190 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc9 A OE1 GLU 103 A GLU 190 5_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc10 A OE1 GLU 105 A GLU 192 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc11 A OD1 ASN 107 A ASN 194 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc12 A OD1 ASN 108 A ASN 195 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc13 A O GLU 113 A GLU 200 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc14 A OE1 GLU 113 A GLU 200 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc15 A OD1 ASP 114 A ASP 201 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc16 A OD1 ASP 114 A ASP 201 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc17 A OD2 ASP 114 A ASP 201 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc18 A OE1 GLN 123 A GLN 210 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc19 A OE1 GLN 123 A GLN 210 5_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc20 A OD1 ASN 125 A ASN 212 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc21 A O ASP 126 A ASP 213 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc22 A OD1 ASP 126 A ASP 213 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc23 B CA CA . A CA 301 1_555 G O HOH . A HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc24 C CA CA . A CA 302 1_555 E S SO4 . A SO4 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.155 ? metalc ? metalc25 C CA CA . A CA 302 1_555 E O4 SO4 . A SO4 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc26 C CA CA . A CA 302 1_555 E O2 SO4 . A SO4 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc27 C CA CA . A CA 302 1_555 E S SO4 . A SO4 304 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.155 ? metalc ? metalc28 C CA CA . A CA 302 1_555 E O1 SO4 . A SO4 304 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc29 C CA CA . A CA 302 1_555 E O3 SO4 . A SO4 304 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc30 F CA CA . A CA 305 1_555 G O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc31 F CA CA . A CA 305 1_555 G O HOH . A HOH 306 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1HUP _atom_sites.fract_transf_matrix[1][1] 0.013041 _atom_sites.fract_transf_matrix[1][2] 0.007529 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 301 CA CA . C 2 CA A 1 302 302 CA CA . D 2 CA A 1 303 303 CA CA . E 3 SO4 A 1 304 304 SO4 SO4 . F 2 CA A 1 305 305 CA CA . G 4 HOH A 1 306 306 HOH HOH . G 4 HOH A 2 313 313 HOH HOH . G 4 HOH A 3 314 314 HOH HOH . G 4 HOH A 4 315 315 HOH HOH . G 4 HOH A 5 316 316 HOH HOH . G 4 HOH A 6 317 317 HOH HOH . G 4 HOH A 7 318 318 HOH HOH . G 4 HOH A 8 319 319 HOH HOH . G 4 HOH A 9 320 320 HOH HOH . G 4 HOH A 10 321 321 HOH HOH . G 4 HOH A 11 322 322 HOH HOH . G 4 HOH A 12 323 323 HOH HOH . G 4 HOH A 13 324 324 HOH HOH . G 4 HOH A 14 325 325 HOH HOH . G 4 HOH A 15 326 326 HOH HOH . G 4 HOH A 16 327 327 HOH HOH . G 4 HOH A 17 328 328 HOH HOH . G 4 HOH A 18 331 331 HOH HOH . G 4 HOH A 19 332 332 HOH HOH . G 4 HOH A 20 334 334 HOH HOH . G 4 HOH A 21 335 335 HOH HOH . G 4 HOH A 22 339 339 HOH HOH . G 4 HOH A 23 340 340 HOH HOH . G 4 HOH A 24 341 341 HOH HOH . G 4 HOH A 25 346 346 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 17.85 _atom_site.Cartn_y 6.136 _atom_site.Cartn_z 9.204 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 60.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #