data_1HUT # _model_server_result.job_id pxqO2i58r9UdkPruszg6qw _model_server_result.datetime_utc '2024-12-27 01:06:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hut # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 1HUT # _exptl.entry_id 1HUT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.962 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-prolinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HUT _cell.length_a 56.52 _cell.length_b 77.44 _cell.length_c 99.52 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HUT _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 9 L CYS 1 1_555 C SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 C SG CYS 28 H CYS 42 1_555 C SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 C SG CYS 173 H CYS 168 1_555 C SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf4 C SG CYS 201 H CYS 191 1_555 C SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? hydrog TYPE_6_PAIR hydrog1 A N7 DG 1 D DG 401 1_555 A N2 DG 6 D DG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog2 A O6 DG 1 D DG 401 1_555 A N1 DG 6 D DG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog3 A N1 DG 1 D DG 401 1_555 A O6 DG 15 D DG 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog4 A N2 DG 1 D DG 401 1_555 A N7 DG 15 D DG 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog5 A N1 DG 2 D DG 402 1_555 A O6 DG 5 D DG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog6 A O6 DG 2 D DG 402 1_555 A N2 DG 14 D DG 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog7 A N1 DG 5 D DG 405 1_555 A O6 DG 11 D DG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog8 A O6 DG 6 D DG 406 1_555 A N1 DG 10 D DG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog9 A N7 DG 10 D DG 410 1_555 A N2 DG 15 D DG 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog10 A N1 DG 11 D DG 411 1_555 A O6 DG 14 D DG 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog11 A N2 DG 11 D DG 411 1_555 A N7 DG 14 D DG 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C21 H31 Cl N6 O3' _chem_comp.formula_weight 450.962 _chem_comp.id 0G7 _chem_comp.mon_nstd_flag . _chem_comp.name D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-prolinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'd-Phe-Pro-Arg chloromethylketone (PPACK)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O 0G7 doub 1 n n N CA 0G7 sing 2 n n N HN 0G7 sing 3 n n N HNA 0G7 sing 4 n n C1 CA1 0G7 sing 5 n n C1 O1 0G7 doub 6 n n N1 C 0G7 sing 7 n n N1 CA1 0G7 sing 8 n n C2 CA2 0G7 sing 9 n n C2 O2 0G7 doub 10 n n N2 C1 0G7 sing 11 n n N2 HN2 0G7 sing 12 n n C3 C2 0G7 sing 13 n n C3 CL1 0G7 sing 14 n n C3 H3 0G7 sing 15 n n C3 H3A 0G7 sing 16 n n CA C 0G7 sing 17 n n CA CB 0G7 sing 18 n n CA HA 0G7 sing 19 n n CB CG 0G7 sing 20 n n CB HB 0G7 sing 21 n n CB HBA 0G7 sing 22 n n CD N1 0G7 sing 23 n n CD CG1 0G7 sing 24 n n NE CD3 0G7 sing 25 n n NE CZ1 0G7 sing 26 n n NE HNE 0G7 sing 27 n n CG CD1 0G7 doub 28 n y CG CD2 0G7 sing 29 n y CZ HZ 0G7 sing 30 n n CA1 HA1 0G7 sing 31 n n CA2 N2 0G7 sing 32 n n CA2 CB2 0G7 sing 33 n n CA2 HA2 0G7 sing 34 n n CB1 CA1 0G7 sing 35 n n CB1 HB1 0G7 sing 36 n n CB1 HB1A 0G7 sing 37 n n CB2 HB2 0G7 sing 38 n n CB2 HB2A 0G7 sing 39 n n CD1 CE1 0G7 sing 40 n y CD1 HD1 0G7 sing 41 n n CD2 CE2 0G7 doub 42 n y CD2 HD2 0G7 sing 43 n n CD3 CG2 0G7 sing 44 n n CD3 HD3 0G7 sing 45 n n CD3 HD3A 0G7 sing 46 n n CE1 CZ 0G7 doub 47 n y CE1 HE1 0G7 sing 48 n n CE2 CZ 0G7 sing 49 n y CE2 HE2 0G7 sing 50 n n CG1 CB1 0G7 sing 51 n n CG2 CB2 0G7 sing 52 n n CG2 HG2 0G7 sing 53 n n CG2 HG2A 0G7 sing 54 n n NH1 HNH1 0G7 sing 55 n n NH1 HNHA 0G7 sing 56 n n NH2 CZ1 0G7 doub 57 n n NH2 HNH2 0G7 sing 58 n n CZ1 NH1 0G7 sing 59 n n CD HD 0G7 sing 60 n n CD H29 0G7 sing 61 n n CG1 HG1 0G7 sing 62 n n CG1 H31 0G7 sing 63 n n # _atom_sites.entry_id 1HUT _atom_sites.fract_transf_matrix[1][1] 0.017693 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 0G7 H 1 1 1 0G7 DPN . E 5 HOH D 1 504 504 HOH HOH . E 5 HOH D 2 512 512 HOH HOH . E 5 HOH D 3 514 514 HOH HOH . E 5 HOH D 4 526 526 HOH HOH . E 5 HOH D 5 544 544 HOH HOH . E 5 HOH D 6 574 574 HOH HOH . E 5 HOH D 7 578 578 HOH HOH . E 5 HOH D 8 583 583 HOH HOH . E 5 HOH D 9 599 599 HOH HOH . E 5 HOH D 10 602 602 HOH HOH . E 5 HOH D 11 603 603 HOH HOH . E 5 HOH D 12 615 615 HOH HOH . E 5 HOH D 13 618 618 HOH HOH . E 5 HOH D 14 621 621 HOH HOH . E 5 HOH D 15 623 623 HOH HOH . E 5 HOH D 16 624 624 HOH HOH . E 5 HOH D 17 630 630 HOH HOH . E 5 HOH D 18 632 632 HOH HOH . E 5 HOH D 19 634 634 HOH HOH . E 5 HOH D 20 637 637 HOH HOH . E 5 HOH D 21 644 644 HOH HOH . E 5 HOH D 22 645 645 HOH HOH . E 5 HOH D 23 648 648 HOH HOH . E 5 HOH D 24 652 652 HOH HOH . E 5 HOH D 25 677 677 HOH HOH . F 5 HOH L 1 501 501 HOH HOH . F 5 HOH L 2 519 519 HOH HOH . F 5 HOH L 3 521 521 HOH HOH . F 5 HOH L 4 540 540 HOH HOH . F 5 HOH L 5 543 543 HOH HOH . F 5 HOH L 6 582 582 HOH HOH . F 5 HOH L 7 597 597 HOH HOH . F 5 HOH L 8 598 598 HOH HOH . F 5 HOH L 9 640 640 HOH HOH . F 5 HOH L 10 651 651 HOH HOH . F 5 HOH L 11 666 666 HOH HOH . F 5 HOH L 12 671 671 HOH HOH . F 5 HOH L 13 678 678 HOH HOH . F 5 HOH L 14 681 681 HOH HOH . F 5 HOH L 15 686 686 HOH HOH . G 5 HOH H 1 502 502 HOH HOH . G 5 HOH H 2 503 503 HOH HOH . G 5 HOH H 3 505 505 HOH HOH . G 5 HOH H 4 506 506 HOH HOH . G 5 HOH H 5 508 508 HOH HOH . G 5 HOH H 6 509 509 HOH HOH . G 5 HOH H 7 510 510 HOH HOH . G 5 HOH H 8 511 511 HOH HOH . G 5 HOH H 9 516 516 HOH HOH . G 5 HOH H 10 517 517 HOH HOH . G 5 HOH H 11 518 518 HOH HOH . G 5 HOH H 12 523 523 HOH HOH . G 5 HOH H 13 525 525 HOH HOH . G 5 HOH H 14 528 528 HOH HOH . G 5 HOH H 15 529 529 HOH HOH . G 5 HOH H 16 531 531 HOH HOH . G 5 HOH H 17 532 532 HOH HOH . G 5 HOH H 18 533 533 HOH HOH . G 5 HOH H 19 536 536 HOH HOH . G 5 HOH H 20 538 538 HOH HOH . G 5 HOH H 21 539 539 HOH HOH . G 5 HOH H 22 541 541 HOH HOH . G 5 HOH H 23 542 542 HOH HOH . G 5 HOH H 24 553 553 HOH HOH . G 5 HOH H 25 554 554 HOH HOH . G 5 HOH H 26 555 555 HOH HOH . G 5 HOH H 27 556 556 HOH HOH . G 5 HOH H 28 558 558 HOH HOH . G 5 HOH H 29 560 560 HOH HOH . G 5 HOH H 30 561 561 HOH HOH . G 5 HOH H 31 562 562 HOH HOH . G 5 HOH H 32 563 563 HOH HOH . G 5 HOH H 33 565 565 HOH HOH . G 5 HOH H 34 566 566 HOH HOH . G 5 HOH H 35 570 570 HOH HOH . G 5 HOH H 36 573 573 HOH HOH . G 5 HOH H 37 575 575 HOH HOH . G 5 HOH H 38 579 579 HOH HOH . G 5 HOH H 39 581 581 HOH HOH . G 5 HOH H 40 586 586 HOH HOH . G 5 HOH H 41 589 589 HOH HOH . G 5 HOH H 42 592 592 HOH HOH . G 5 HOH H 43 594 594 HOH HOH . G 5 HOH H 44 595 595 HOH HOH . G 5 HOH H 45 596 596 HOH HOH . G 5 HOH H 46 600 600 HOH HOH . G 5 HOH H 47 605 605 HOH HOH . G 5 HOH H 48 611 611 HOH HOH . G 5 HOH H 49 612 612 HOH HOH . G 5 HOH H 50 613 613 HOH HOH . G 5 HOH H 51 616 616 HOH HOH . G 5 HOH H 52 617 617 HOH HOH . G 5 HOH H 53 619 619 HOH HOH . G 5 HOH H 54 620 620 HOH HOH . G 5 HOH H 55 622 622 HOH HOH . G 5 HOH H 56 625 625 HOH HOH . G 5 HOH H 57 626 626 HOH HOH . G 5 HOH H 58 627 627 HOH HOH . G 5 HOH H 59 629 629 HOH HOH . G 5 HOH H 60 631 631 HOH HOH . G 5 HOH H 61 633 633 HOH HOH . G 5 HOH H 62 635 635 HOH HOH . G 5 HOH H 63 638 638 HOH HOH . G 5 HOH H 64 639 639 HOH HOH . G 5 HOH H 65 641 641 HOH HOH . G 5 HOH H 66 643 643 HOH HOH . G 5 HOH H 67 646 646 HOH HOH . G 5 HOH H 68 650 650 HOH HOH . G 5 HOH H 69 653 653 HOH HOH . G 5 HOH H 70 654 654 HOH HOH . G 5 HOH H 71 655 655 HOH HOH . G 5 HOH H 72 656 656 HOH HOH . G 5 HOH H 73 657 657 HOH HOH . G 5 HOH H 74 658 658 HOH HOH . G 5 HOH H 75 662 662 HOH HOH . G 5 HOH H 76 663 663 HOH HOH . G 5 HOH H 77 664 664 HOH HOH . G 5 HOH H 78 665 665 HOH HOH . G 5 HOH H 79 667 667 HOH HOH . G 5 HOH H 80 668 668 HOH HOH . G 5 HOH H 81 669 669 HOH HOH . G 5 HOH H 82 670 670 HOH HOH . G 5 HOH H 83 672 672 HOH HOH . G 5 HOH H 84 673 673 HOH HOH . G 5 HOH H 85 674 674 HOH HOH . G 5 HOH H 86 676 676 HOH HOH . G 5 HOH H 87 679 679 HOH HOH . G 5 HOH H 88 680 680 HOH HOH . G 5 HOH H 89 684 684 HOH HOH . G 5 HOH H 90 685 685 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 0G7 . . . D 4 31.449 47.504 26.711 1 21.89 ? N 0G7 1 H 1 HETATM 2 C CA 0G7 . . . D 4 30.57 48.251 27.669 1 22.89 ? CA 0G7 1 H 1 HETATM 3 C C 0G7 . . . D 4 29.359 47.37 27.934 1 21.98 ? C 0G7 1 H 1 HETATM 4 O O 0G7 . . . D 4 29.521 46.164 28.051 1 23.44 ? O 0G7 1 H 1 HETATM 5 C CB 0G7 . . . D 4 31.332 48.684 28.868 1 26.51 ? CB 0G7 1 H 1 HETATM 6 C CG 0G7 . . . D 4 30.688 48.928 30.198 1 28.71 ? CG 0G7 1 H 1 HETATM 7 C CD1 0G7 . . . D 4 30.161 50.183 30.502 1 29.07 ? CD1 0G7 1 H 1 HETATM 8 C CD2 0G7 . . . D 4 30.732 47.954 31.201 1 28.64 ? CD2 0G7 1 H 1 HETATM 9 C CE1 0G7 . . . D 4 29.647 50.468 31.756 1 31.78 ? CE1 0G7 1 H 1 HETATM 10 C CE2 0G7 . . . D 4 30.216 48.216 32.468 1 30.56 ? CE2 0G7 1 H 1 HETATM 11 C CZ 0G7 . . . D 4 29.665 49.476 32.758 1 31.17 ? CZ 0G7 1 H 1 HETATM 12 N N1 0G7 . . . D 4 28.184 47.938 27.92 1 21.8 ? N1 0G7 1 H 1 HETATM 13 C CA1 0G7 . . . D 4 26.949 47.17 28.126 1 22.25 ? CA1 0G7 1 H 1 HETATM 14 C C1 0G7 . . . D 4 26.715 45.846 27.455 1 21.51 ? C1 0G7 1 H 1 HETATM 15 O O1 0G7 . . . D 4 25.918 45.07 28.152 1 22.75 ? O1 0G7 1 H 1 HETATM 16 C CB1 0G7 . . . D 4 25.812 48.222 27.972 1 22.13 ? CB1 0G7 1 H 1 HETATM 17 C CG1 0G7 . . . D 4 26.443 49.566 27.837 1 21.89 ? CG1 0G7 1 H 1 HETATM 18 C CD 0G7 . . . D 4 27.945 49.393 27.773 1 21.87 ? CD 0G7 1 H 1 HETATM 19 N N2 0G7 . . . D 4 27.161 45.328 26.381 1 20.52 ? N2 0G7 1 H 1 HETATM 20 C CA2 0G7 . . . D 4 26.843 43.993 25.875 1 21.4 ? CA2 0G7 1 H 1 HETATM 21 C C2 0G7 . . . D 4 25.369 43.581 25.84 1 20.03 ? C2 0G7 1 H 1 HETATM 22 O O2 0G7 . . . D 4 25.21 42.34 25.892 1 18.59 ? O2 0G7 1 H 1 HETATM 23 C CB2 0G7 . . . D 4 27.525 42.804 26.601 1 23.73 ? CB2 0G7 1 H 1 HETATM 24 C CG2 0G7 . . . D 4 28.969 42.476 26.351 1 26.43 ? CG2 0G7 1 H 1 HETATM 25 C CD3 0G7 . . . D 4 29.313 41.116 25.856 1 27.12 ? CD3 0G7 1 H 1 HETATM 26 N NE 0G7 . . . D 4 30.769 40.883 25.804 1 27.8 ? NE 0G7 1 H 1 HETATM 27 C CZ1 0G7 . . . D 4 31.396 39.733 26.05 1 26.41 ? CZ1 0G7 1 H 1 HETATM 28 N NH1 0G7 . . . D 4 30.671 38.653 26.379 1 28.06 ? NH1 0G7 1 H 1 HETATM 29 N NH2 0G7 . . . D 4 32.722 39.582 26.01 1 21.99 ? NH2 0G7 1 H 1 HETATM 30 C C3 0G7 . . . D 4 24.411 44.307 25.647 1 20.35 ? C3 0G7 1 H 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 30 #