data_1HV4
#
_model_server_result.job_id            yAum-85CiAOSuFCBhCW1yA 
_model_server_result.datetime_utc      '2025-03-06 23:17:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hv4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":153}' 
#
_entry.id    1HV4 
#
_exptl.entry_id    1HV4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         71.55 
_cell.angle_beta          65.1 
_cell.angle_gamma         83.1 
_cell.entry_id            1HV4 
_cell.length_a            70.66 
_cell.length_b            94.1 
_cell.length_c            59.23 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HV4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L 1 1 
E,F,G,H,M,N,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 I FE HEM . A HEM 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc2 B NE2 HIS 92 B HIS 92 1_555 J FE HEM . B HEM 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc3 C NE2 HIS 87 C HIS 87 1_555 K FE HEM . C HEM 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc4 D NE2 HIS 92 D HIS 92 1_555 L FE HEM . D HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc5 E NE2 HIS 87 E HIS 87 1_555 M FE HEM . E HEM 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc6 F NE2 HIS 92 F HIS 92 1_555 N FE HEM . F HEM 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc7 G NE2 HIS 87 G HIS 87 1_555 O FE HEM . G HEM 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc8 H NE2 HIS 92 H HIS 92 1_555 P FE HEM . H HEM 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     1HV4 
_atom_sites.fract_transf_matrix[1][1]    0.014152 
_atom_sites.fract_transf_matrix[1][2]    -0.001713 
_atom_sites.fract_transf_matrix[1][3]    -0.006347 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010705 
_atom_sites.fract_transf_matrix[2][3]    -0.003308 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019482 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 HEM A 1 151 150 HEM HEM . 
J 3 HEM B 1 152 150 HEM HEM . 
K 3 HEM C 1 153 150 HEM HEM . 
L 3 HEM D 1 154 150 HEM HEM . 
M 3 HEM E 1 155 150 HEM HEM . 
N 3 HEM F 1 156 150 HEM HEM . 
O 3 HEM G 1 157 150 HEM HEM . 
P 3 HEM H 1 158 150 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . K 3 67.499 15.751 10.944 1 21.03 ? CHA HEM 153 C 1 
HETATM 2 C CHB HEM . . . K 3 66.519 12.519 14.418 1 17.97 ? CHB HEM 153 C 1 
HETATM 3 C CHC HEM . . . K 3 62.474 11.211 12.264 1 12.57 ? CHC HEM 153 C 1 
HETATM 4 C CHD HEM . . . K 3 63.547 14.206 8.643 1 11.38 ? CHD HEM 153 C 1 
HETATM 5 C C1A HEM . . . K 3 67.574 14.942 12.072 1 22.61 ? C1A HEM 153 C 1 
HETATM 6 C C2A HEM . . . K 3 68.669 14.935 13.049 1 24.18 ? C2A HEM 153 C 1 
HETATM 7 C C3A HEM . . . K 3 68.402 13.984 13.961 1 21.12 ? C3A HEM 153 C 1 
HETATM 8 C C4A HEM . . . K 3 67.133 13.43 13.599 1 19.69 ? C4A HEM 153 C 1 
HETATM 9 C CMA HEM . . . K 3 69.249 13.637 15.179 1 16.84 ? CMA HEM 153 C 1 
HETATM 10 C CAA HEM . . . K 3 69.781 15.915 13.304 1 25.94 ? CAA HEM 153 C 1 
HETATM 11 C CBA HEM . . . K 3 70.982 15.992 12.405 1 31.31 ? CBA HEM 153 C 1 
HETATM 12 C CGA HEM . . . K 3 72.032 16.919 12.971 1 32.26 ? CGA HEM 153 C 1 
HETATM 13 O O1A HEM . . . K 3 71.684 18.04 13.401 1 36.3 ? O1A HEM 153 C 1 
HETATM 14 O O2A HEM . . . K 3 73.209 16.532 12.987 1 36.38 ? O2A HEM 153 C 1 
HETATM 15 C C1B HEM . . . K 3 65.329 11.909 14.158 1 11.46 ? C1B HEM 153 C 1 
HETATM 16 C C2B HEM . . . K 3 64.765 10.992 15.028 1 11.74 ? C2B HEM 153 C 1 
HETATM 17 C C3B HEM . . . K 3 63.649 10.512 14.399 1 9.98 ? C3B HEM 153 C 1 
HETATM 18 C C4B HEM . . . K 3 63.521 11.252 13.18 1 12.84 ? C4B HEM 153 C 1 
HETATM 19 C CMB HEM . . . K 3 65.318 10.698 16.446 1 12.19 ? CMB HEM 153 C 1 
HETATM 20 C CAB HEM . . . K 3 62.873 9.451 14.8 1 9.02 ? CAB HEM 153 C 1 
HETATM 21 C CBB HEM . . . K 3 62.345 9.458 16.157 1 17.19 ? CBB HEM 153 C 1 
HETATM 22 C C1C HEM . . . K 3 62.359 12.001 11.134 1 3.96 ? C1C HEM 153 C 1 
HETATM 23 C C2C HEM . . . K 3 61.363 11.78 10.111 1 3.49 ? C2C HEM 153 C 1 
HETATM 24 C C3C HEM . . . K 3 61.78 12.526 9.011 1 9.02 ? C3C HEM 153 C 1 
HETATM 25 C C4C HEM . . . K 3 62.915 13.291 9.464 1 10.17 ? C4C HEM 153 C 1 
HETATM 26 C CMC HEM . . . K 3 60.07 10.96 10.219 1 3.36 ? CMC HEM 153 C 1 
HETATM 27 C CAC HEM . . . K 3 61.313 12.58 7.677 1 3.36 ? CAC HEM 153 C 1 
HETATM 28 C CBC HEM . . . K 3 60.422 11.703 6.953 1 5.45 ? CBC HEM 153 C 1 
HETATM 29 C C1D HEM . . . K 3 64.704 14.863 8.966 1 15.57 ? C1D HEM 153 C 1 
HETATM 30 C C2D HEM . . . K 3 65.405 15.684 8.047 1 19.35 ? C2D HEM 153 C 1 
HETATM 31 C C3D HEM . . . K 3 66.506 16.186 8.662 1 20.04 ? C3D HEM 153 C 1 
HETATM 32 C C4D HEM . . . K 3 66.463 15.649 10.011 1 21.11 ? C4D HEM 153 C 1 
HETATM 33 C CMD HEM . . . K 3 65.053 15.836 6.562 1 19.71 ? CMD HEM 153 C 1 
HETATM 34 C CAD HEM . . . K 3 67.608 16.871 7.837 1 22.3 ? CAD HEM 153 C 1 
HETATM 35 C CBD HEM . . . K 3 69.044 17.041 8.304 1 23.23 ? CBD HEM 153 C 1 
HETATM 36 C CGD HEM . . . K 3 70 17.325 7.155 1 29.74 ? CGD HEM 153 C 1 
HETATM 37 O O1D HEM . . . K 3 69.821 18.339 6.446 1 32.31 ? O1D HEM 153 C 1 
HETATM 38 O O2D HEM . . . K 3 70.941 16.527 6.958 1 36.31 ? O2D HEM 153 C 1 
HETATM 39 N NA HEM . . . K 3 66.627 13.977 12.416 1 17.59 ? NA HEM 153 C 1 
HETATM 40 N NB HEM . . . K 3 64.581 12.086 13.027 1 16.7 ? NB HEM 153 C 1 
HETATM 41 N NC HEM . . . K 3 63.304 12.919 10.742 1 8.51 ? NC HEM 153 C 1 
HETATM 42 N ND HEM . . . K 3 65.386 14.767 10.155 1 19.18 ? ND HEM 153 C 1 
HETATM 43 FE FE HEM . . . K 3 65.031 13.375 11.463 1 3.81 ? FE HEM 153 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#